Cow genome map

Conread name: rfce17c_a1.y1

Conread position: 2-157
Cow position: chr29:24119268-24119425 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 20, 0

Conread position: 3-156
Cow position: chr29:20644146-20643991 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 4-156
Cow position: chr29:4647981-4648133 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 29, 68

Conread position: 5-139
Cow position: chr29:22068518-22068650 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 51, 15

Conread position: 5-143
Cow position: chr29:31929210-31929076 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 24

Conread position: 5-148
Cow position: chr29:14577081-14576943 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 26

Conread position: 5-156
Cow position: chr29:42630343-42630197 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 93

Conread position: 5-157
Cow position: chr29:8669579-8669429 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 6, 41

Conread position: 6-148
Cow position: chr29:14375653-14375797 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 7-141
Cow position: chr29:13558561-13558424 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 7-155
Cow position: chr29:6337878-6337727 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 85

Conread position: 8-138
Cow position: chr29:20604922-20605054 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 8-147
Cow position: chr29:31835490-31835357 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 48, 28

Conread position: 8-148
Cow position: chr29:34297350-34297484 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 50, 11

Conread position: 8-157
Cow position: chr29:34483403-34483552 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 49, 29

Conread position: 9-117
Cow position: chr29:28616942-28616833 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 9-148
Cow position: chr29:2219611-2219471 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 17, 95

Conread position: 9-148
Cow position: chr29:16609973-16609832 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 9-157
Cow position: chr29:44684319-44684173 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 94

Conread position: 9-161
Cow position: chr29:30441161-30441008 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 147

Conread position: 10-121
Cow position: chr29:20256442-20256329 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 10-141
Cow position: chr29:29264857-29264990 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 10-146
Cow position: chr29:6517452-6517313 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 14, 109

Conread position: 10-156
Cow position: chr29:16164212-16164360 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 14, 37

Conread position: 10-156
Cow position: chr29:27911813-27911666 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 10-157
Cow position: chr29:4121078-4120929 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 10-157
Cow position: chr29:18878257-18878406 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 22, 55

Conread position: 10-159
Cow position: chr29:22018967-22019114 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 39, 14

Conread position: 10-161
Cow position: chr29:22720427-22720572 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 26

Conread position: 10-163
Cow position: chr29:8163607-8163760 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 26

Conread position: 10-163
Cow position: chr29:26777231-26777077 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 46, 0

Conread position: 11-121
Cow position: chr29:22814455-22814565 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 11-147
Cow position: chr29:37618529-37618391 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 11-148
Cow position: chr29:11685391-11685251 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 11-148
Cow position: chr29:41531071-41530934 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 45, 127

Conread position: 11-156
Cow position: chr29:16735445-16735300 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 25

Conread position: 11-161
Cow position: chr29:28087894-28087746 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 85

Conread position: 12-147
Cow position: chr29:11894917-11894783 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 44, 12

Conread position: 12-157
Cow position: chr29:14746999-14746855 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 101

Conread position: 12-157
Cow position: chr29:23874681-23874535 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 123
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 44, 0

Conread position: 13-148
Cow position: chr29:44937778-44937915 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 47, 17

Conread position: 13-155
Cow position: chr29:29057392-29057252 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 109, 33

Conread position: 14-148
Cow position: chr29:34744413-34744545 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 32, 54

Conread position: 15-148
Cow position: chr29:38754722-38754853 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 42, 103

Conread position: 15-151
Cow position: chr29:28420973-28420836 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 17-161
Cow position: chr29:24605109-24604967 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 19

Conread position: 18-159
Cow position: chr29:4741175-4741318 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 0

Conread position: 19-156
Cow position: chr29:35292298-35292169 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 91

Conread position: 20-129
Cow position: chr29:25975317-25975429 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 20-145
Cow position: chr29:6716301-6716427 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 20-145
Cow position: chr29:16200265-16200391 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 20-146
Cow position: chr29:14614824-14614951 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 67

Conread position: 20-148
Cow position: chr29:3711587-3711458 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 20-148
Cow position: chr29:32656648-32656518 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 6, 0

Conread position: 20-157
Cow position: chr29:22576967-22577104 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 103

Conread position: 20-157
Cow position: chr29:30294660-30294798 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 20-157
Cow position: chr29:38732368-38732228 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 20-161
Cow position: chr29:14828018-14828157 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 20-161
Cow position: chr29:26211264-26211123 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 37, 110

Conread position: 21-146
Cow position: chr29:33321559-33321433 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 21-148
Cow position: chr29:35458559-35458688 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 21-157
Cow position: chr29:2414545-2414677 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 11, 28

Conread position: 21-161
Cow position: chr29:26017291-26017431 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 16

Conread position: 23-157
Cow position: chr29:35189817-35189682 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 24-161
Cow position: chr29:15947376-15947238 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 115
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 33, 0

Conread position: 24-161
Cow position: chr29:42887178-42887040 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 25-143
Cow position: chr29:34832187-34832309 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 25-146
Cow position: chr29:41844044-41844166 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 25-148
Cow position: chr29:41094322-41094201 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 26-141
Cow position: chr29:2744064-2744179 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 96

Conread position: 26-148
Cow position: chr29:7040664-7040788 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 30, 10

Conread position: 27-148
Cow position: chr29:774194-774072 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 27-157
Cow position: chr29:12025276-12025401 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 27-157
Cow position: chr29:36220747-36220609 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 29-148
Cow position: chr29:35677339-35677459 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 29-156
Cow position: chr29:4441004-4441129 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 7

Conread position: 31-139
Cow position: chr29:7452441-7452334 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 72

Conread position: 31-157
Cow position: chr29:17297338-17297211 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 108
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 31-161
Cow position: chr29:20167623-20167495 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 39

Conread position: 33-125
Cow position: chr29:9924375-9924468 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 33-146
Cow position: chr29:8841251-8841359 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 23, 74

Conread position: 33-155
Cow position: chr29:36357326-36357203 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 33-157
Cow position: chr29:5520286-5520410 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 24, 76

Conread position: 36-147
Cow position: chr29:24187868-24187980 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 36-157
Cow position: chr29:23142137-23142259 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 36-161
Cow position: chr29:23819189-23819319 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Show alignments to all cow chromosomes.