Cow genome map
| Conread name: | rfhi4017b_k6.y1 |
| Conread position: | 292-487 |
| Cow position: | chr1:77755038-77755234 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 303-488 |
| Cow position: | chr1:79348971-79349166 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 327-488 |
| Cow position: | chr1:52207625-52207463 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 351-479 |
| Cow position: | chr1:71111712-71111839 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 352-488 |
| Cow position: | chr1:53568248-53568112 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 357-488 |
| Cow position: | chr1:34893181-34893051 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 360-488 |
| Cow position: | chr1:81370873-81370998 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 361-474 |
| Cow position: | chr1:78885257-78885370 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 361-487 |
| Cow position: | chr1:85837-85711 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 361-488 |
| Cow position: | chr1:3750497-3750369 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 362-487 |
| Cow position: | chr1:99458083-99458206 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 364-488 |
| Cow position: | chr1:11878584-11878708 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 364-488 |
| Cow position: | chr1:63134514-63134390 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 366-481 |
| Cow position: | chr1:37432979-37432865 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 366-488 |
| Cow position: | chr1:88017233-88017355 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 367-488 |
| Cow position: | chr1:2412579-2412697 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 374-488 |
| Cow position: | chr1:3746691-3746580 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 381-482 |
| Cow position: | chr1:25885518-25885620 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 381-482 |
| Cow position: | chr1:87910860-87910759 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 381-488 |
| Cow position: | chr1:2203771-2203879 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 381-488 |
| Cow position: | chr1:18223292-18223399 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 381-488 |
| Cow position: | chr1:23625411-23625303 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 381-488 |
| Cow position: | chr1:34311457-34311350 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 381-488 |
| Cow position: | chr1:45979226-45979119 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 94 |
| Conread position: | 381-488 |
| Cow position: | chr1:64098696-64098804 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 381-488 |
| Cow position: | chr1:65155191-65155299 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 381-488 |
| Cow position: | chr1:82572660-82572765 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 381-488 |
| Cow position: | chr1:90370177-90370285 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 382-468 |
| Cow position: | chr1:23510211-23510298 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 382-488 |
| Cow position: | chr1:31951941-31951832 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 382-488 |
| Cow position: | chr1:59911164-59911058 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 382-488 |
| Cow position: | chr1:64745168-64745276 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 383-486 |
| Cow position: | chr1:71272602-71272499 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 383-487 |
| Cow position: | chr1:14559971-14560076 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 383-488 |
| Cow position: | chr1:61242301-61242195 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 387-487 |
| Cow position: | chr1:54365037-54365138 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 388-488 |
| Cow position: | chr1:71555222-71555323 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.