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Cow genome map

           
Conread name:
           
rfhi4020b_c9.y1
        

               
Conread position:
               
1-108
               

               
Cow position:
               
chr12:30170631-30170737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr12:5906018-5906130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr12:30210445-30210562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr12:19691269-19691151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr12:24116401-24116278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr12:27357350-27357472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr12:30605203-30605081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr12:6485248-6485126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr12:15260725-15260850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
117, 92
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr12:15641146-15641021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr12:45092408-45092533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr12:7311342-7311470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr12:26151498-26151372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr12:27037488-27037362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr12:45820404-45820266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr12:27572278-27572138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr12:32715008-32715152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr12:4008322-4008154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr12:15122286-15122474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr12:15163102-15163309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 28
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr12:15703535-15703340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
177, 42
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr12:33851323-33851513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
177, 25
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr12:42879656-42879856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
182, 97
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr12:46120872-46120661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
16, 204
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr12:33948866-33949058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
180, 115
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr12:24166982-24166789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
177, 110
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr12:2734946-2734750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
179, 117
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr12:19261157-19261356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
178, 128
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr12:22285160-22284961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
182, 75
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr12:17080222-17080428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
178, 95
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:5135195-5135396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
171, 41
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:6720289-6720511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:9143349-9143549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
178, 109
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:18518635-18518835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
176, 125
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:25917311-25917121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:36544681-36544481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:39591680-39591468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 131
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr12:5554372-5554173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
181, 127
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr12:33319706-33319472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
113, 222
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr12:46464106-46463880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 74
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr12:19502466-19502240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
132, 109
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr12:14986711-14986924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
180, 100
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr12:17879339-17879133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr12:34148399-34148165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr12:18020820-18021054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr12:24437673-24437456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
177, 127
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr12:36994154-36993916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr12:44622317-44622535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr12:18583030-18582824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
182, 42
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr12:29770610-29770376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 35
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr12:15429634-15429418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
182, 100
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr12:24663076-24663293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
203, 110
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr12:25561332-25561544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
177, 41
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr12:18388328-18388111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr12:17252236-17252026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
182, 21
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr12:37514319-37514103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr12:36261651-36261876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
134, 109
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr12:24032458-24032668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
182, 109
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr12:7884719-7884496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
177, 127
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr12:16605711-16605485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
180, 83
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr12:18123631-18123853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
182, 127
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr12:45039069-45039293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 120
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr12:5635491-5635259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
182, 117
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr12:5839694-5839476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
76, 126
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr12:9766915-9766690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
182, 127
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr12:17269764-17269988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
186, 109
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr12:23696198-23695961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
132, 61
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr12:16670230-16670444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
181, 86
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr12:42784272-42784494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
3-124
               

               
Cow position:
               
chr12:19274433-19274313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr12:48578807-48578931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
3-143
               

               
Cow position:
               
chr12:19507601-19507740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr12:37993768-37993592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
126, 143
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr12:32169505-32169703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
180, 20
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr12:31228536-31228743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr12:7000639-7000420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr12:20355177-20355386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chr12:11056839-11057033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr12:41159554-41159757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
196, 37
               

               
Conread position:
               
3-225
               

               
Cow position:
               
chr12:6480604-6480815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr12:6241283-6241507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
180, 125
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr12:25444878-25445119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
111, 167
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr12:23105901-23106125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
179, 126
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr12:39150088-39149862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 85
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr12:30590728-30590958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr12:42181165-42180940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
173, 115
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr12:42749404-42749635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr12:29731279-29731472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
179, 113
               

               
Conread position:
               
4-209
               

               
Cow position:
               
chr12:39486389-39486593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
114, 54
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr12:18513964-18513753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 73
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr12:15089481-15089694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
174, 60
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr12:23714640-23714855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
174, 114
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr12:19061541-19061318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
179, 38
               

               
Conread position:
               
5-126
               

               
Cow position:
               
chr12:26777223-26777104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr12:23574729-23574919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
176, 111
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr12:37169980-37169786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
109, 124
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chr12:2964016-2964222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 35
               

               
Conread position:
               
7-128
               

               
Cow position:
               
chr12:16434904-16434783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 37
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr12:11659896-11660113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
9-209
               

               
Cow position:
               
chr12:12300889-12301091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
9-210
               

               
Cow position:
               
chr12:18523537-18523748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
10-220
               

               
Cow position:
               
chr12:46064834-46065040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
11-148
               

               
Cow position:
               
chr12:1766884-1767020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
11-221
               

               
Cow position:
               
chr12:41214213-41213997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
11-235
               

               
Cow position:
               
chr12:30919397-30919628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
172, 100
               

               
Conread position:
               
12-127
               

               
Cow position:
               
chr12:4866790-4866905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
12-182
               

               
Cow position:
               
chr12:42143133-42143311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 33
               

               
Conread position:
               
12-207
               

               
Cow position:
               
chr12:7110170-7110369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
171, 116
               

               
Conread position:
               
12-207
               

               
Cow position:
               
chr12:29200420-29200217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 6
               

               
Conread position:
               
12-207
               

               
Cow position:
               
chr12:31883311-31883507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
12-208
               

               
Cow position:
               
chr12:38774270-38774083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
171, 76
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr12:3675554-3675351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr12:28651086-28651286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
121, 171
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr12:33976172-33976366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
171, 104
               

               
Conread position:
               
12-210
               

               
Cow position:
               
chr12:14222954-14223147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
171, 106
               

               
Conread position:
               
12-210
               

               
Cow position:
               
chr12:35136892-35137085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
12-222
               

               
Cow position:
               
chr12:26868840-26868641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
12-225
               

               
Cow position:
               
chr12:29944975-29944759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 117
               

               
Conread position:
               
12-225
               

               
Cow position:
               
chr12:35241132-35240925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
166, 89
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr12:24397190-24396985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
171, 48
               

               
Conread position:
               
12-227
               

               
Cow position:
               
chr12:10942260-10942475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
171, 116
               

               
Conread position:
               
12-229
               

               
Cow position:
               
chr12:25823254-25823045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
168, 30
               

               
Conread position:
               
12-232
               

               
Cow position:
               
chr12:21780135-21780352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 76
               

               
Conread position:
               
12-232
               

               
Cow position:
               
chr12:35368615-35368831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
106, 142
               

               
Conread position:
               
12-233
               

               
Cow position:
               
chr12:42602270-42602051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
12-235
               

               
Cow position:
               
chr12:25456381-25456614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
12-236
               

               
Cow position:
               
chr12:26357398-26357182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
13-210
               

               
Cow position:
               
chr12:35771047-35770860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
158, 102
               

               
Conread position:
               
13-221
               

               
Cow position:
               
chr12:26749978-26749774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
160, 115
               

               
Conread position:
               
14-221
               

               
Cow position:
               
chr12:4512475-4512275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
163, 110
               

               
Conread position:
               
14-229
               

               
Cow position:
               
chr12:22469486-22469706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
14-229
               

               
Cow position:
               
chr12:27430481-27430702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 140
               

               
Conread position:
               
14-229
               

               
Cow position:
               
chr12:43551247-43551033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 101
               

               
Conread position:
               
16-208
               

               
Cow position:
               
chr12:44013620-44013427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
162, 112
               

               
Conread position:
               
16-219
               

               
Cow position:
               
chr12:3057064-3057261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
167, 94
               

               
Conread position:
               
17-208
               

               
Cow position:
               
chr12:4341766-4341573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
148, 111
               

               
Conread position:
               
17-235
               

               
Cow position:
               
chr12:3454667-3454887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 117
               

               
Conread position:
               
18-208
               

               
Cow position:
               
chr12:32391897-32392092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
18-223
               

               
Cow position:
               
chr12:22047903-22048101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
20-218
               

               
Cow position:
               
chr12:14131787-14131583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
23-207
               

               
Cow position:
               
chr12:15050641-15050464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
28-214
               

               
Cow position:
               
chr12:43619269-43619451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
29-209
               

               
Cow position:
               
chr12:28598253-28598434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
140, 87
               

               
Conread position:
               
29-218
               

               
Cow position:
               
chr12:11106591-11106415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
29-224
               

               
Cow position:
               
chr12:30042715-30042907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 59
               

               
Conread position:
               
29-228
               

               
Cow position:
               
chr12:27176630-27176818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
29-228
               

               
Cow position:
               
chr12:27192374-27192186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
29-229
               

               
Cow position:
               
chr12:22341236-22341442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 103
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr12:583520-583320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
149, 87
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr12:4962624-4962842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
30-201
               

               
Cow position:
               
chr12:22485797-22485968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
135, 98
               

               
Conread position:
               
30-228
               

               
Cow position:
               
chr12:44861269-44861074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
153, 88
               

               
Conread position:
               
30-232
               

               
Cow position:
               
chr12:4014442-4014238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
153, 101
               

               
Conread position:
               
31-207
               

               
Cow position:
               
chr12:4008095-4007922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
147, 73
               

               
Conread position:
               
31-208
               

               
Cow position:
               
chr12:15832185-15832369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
31-208
               

               
Cow position:
               
chr12:24186498-24186315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
102, 12
               

               
Conread position:
               
31-231
               

               
Cow position:
               
chr12:20356818-20356627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
31-231
               

               
Cow position:
               
chr12:38679041-38679234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
147, 87
               

               
Conread position:
               
31-235
               

               
Cow position:
               
chr12:23764475-23764688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
31-237
               

               
Cow position:
               
chr12:12699649-12699448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
151, 87
               

               
Conread position:
               
32-219
               

               
Cow position:
               
chr12:19272696-19272517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
33-221
               

               
Cow position:
               
chr12:4104811-4105004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
33-228
               

               
Cow position:
               
chr12:11583703-11583905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
33-231
               

               
Cow position:
               
chr12:15509768-15509585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
181, 68
               

               
Conread position:
               
34-220
               

               
Cow position:
               
chr12:11090411-11090617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
67, 192
               

               
Conread position:
               
35-208
               

               
Cow position:
               
chr12:42684949-42684773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
111, 81
               

               
Conread position:
               
39-209
               

               
Cow position:
               
chr12:2835403-2835568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
144, 62
               

               
Conread position:
               
43-209
               

               
Cow position:
               
chr12:29762246-29762079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr12:36012624-36012436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
45-237
               

               
Cow position:
               
chr12:44602512-44602697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
138, 51
               

               
Conread position:
               
47-230
               

               
Cow position:
               
chr12:9866227-9866044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
86, 43
               

               
Conread position:
               
48-207
               

               
Cow position:
               
chr12:18978696-18978847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
135, 71
               

               
Conread position:
               
48-210
               

               
Cow position:
               
chr12:38002133-38002302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
48-237
               

               
Cow position:
               
chr12:13995789-13995606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
110, 80
               

               
Conread position:
               
52-205
               

               
Cow position:
               
chr12:17258923-17259067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
52-225
               

               
Cow position:
               
chr12:44892220-44892388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
52-230
               

               
Cow position:
               
chr12:37742311-37742489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
55-208
               

               
Cow position:
               
chr12:11950153-11950319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
55-235
               

               
Cow position:
               
chr12:19056688-19056866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 73
               

               
Conread position:
               
55-237
               

               
Cow position:
               
chr12:42163056-42163226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 51
               

               
Conread position:
               
56-209
               

               
Cow position:
               
chr12:34473608-34473445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
58-235
               

               
Cow position:
               
chr12:46106806-46106979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
59-232
               

               
Cow position:
               
chr12:18418449-18418618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
118, 50
               

               
Conread position:
               
62-231
               

               
Cow position:
               
chr12:14360665-14360829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
114, 71
               

               
Conread position:
               
80-233
               

               
Cow position:
               
chr12:44421862-44422007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
107-231
               

               
Cow position:
               
chr12:11333498-11333372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 26
               
Show alignments to all cow chromosomes.