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Cow genome map

           
Conread name:
           
rfhi4021b_l19.y1
        

               
Conread position:
               
1-161
               

               
Cow position:
               
chr21:26241654-26241815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr21:31159086-31159250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr21:40065483-40065303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 68
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr21:33419885-33419706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr21:9998891-9998692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
52, 128
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:34738428-34738638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr21:9278202-9278410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 134
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr21:13850241-13850036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr21:18494795-18494999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
68, 136
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr21:37361638-37361426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
210, 85
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr21:34835593-34835385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr21:42905548-42905327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 132
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr21:12616969-12617194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr21:40058636-40058864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 8
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr21:42913916-42913674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 125
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr21:912137-911896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr21:31676328-31676574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:16909888-16910138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 130
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr21:26829416-26829183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr21:27743572-27743829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 37
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr21:1464058-1464314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
72, 127
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr21:8985379-8985636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr21:28881972-28882222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 84
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr21:46829438-46829193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 128
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:24765113-24765370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 138
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:32535806-32536067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
72, 106
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:39450336-39450071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr21:35897796-35897547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
199, 74
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr21:45866766-45867025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr21:4189664-4189933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
68, 126
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr21:20925677-20925410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 122
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr21:23499993-23499731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr21:5596976-5597246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 129
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr21:17674406-17674139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 34
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr21:3381251-3380983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr21:3813653-3813388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr21:17174972-17175242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
16, 135
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr21:28998076-28997802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr21:6764872-6764603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr21:28443548-28443276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 126
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr21:5636891-5636622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
68, 127
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr21:47802430-47802155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 127
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr21:19937103-19936809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr21:24607215-24607502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
71, 130
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr21:24222708-24222420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
68, 37
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:10727110-10727397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
85, 121
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr21:13489472-13489767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 125
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr21:40244264-40244570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr21:32191999-32192301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr21:13488349-13488659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 94
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr21:5566819-5567123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr21:725062-724746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 136
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr21:10514637-10514946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr21:18828480-18828163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 132
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr21:30607258-30606947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 78
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr21:34391140-34390836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr21:44515104-44515403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:46143773-46144106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 95
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr21:13754632-13754936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
222, 37
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr21:18850389-18850074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 68
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr21:19363634-19363310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 131
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr21:41878306-41878626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr21:45330778-45330445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr21:15911230-15911569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 129
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr21:33791538-33791213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr21:36642737-36643074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr21:28955352-28955671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr21:8235715-8235388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr21:37345272-37344927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 129
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr21:42414273-42413922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 132
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr21:31691308-31691658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
68, 118
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr21:33210028-33210365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
68, 128
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr21:395705-396048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr21:45850881-45850526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr21:28810433-28810080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr21:5153447-5153804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 183
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr21:1058906-1059262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 129
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr21:24598491-24598843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
74, 130
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:18845185-18844824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 31
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:33562845-33563190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:28429279-28429632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 82
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:28626071-28626425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr21:33729264-33729619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 126
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr21:41597645-41598000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 130
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:15976471-15976822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 42
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:32237127-32237470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
68, 94
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:45473927-45473567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr21:10118383-10118756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
68, 137
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr21:36297308-36297686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
53, 136
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr21:25800238-25800593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
205, 15
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr21:33263679-33264037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr21:33727631-33727268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 108
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr21:18790726-18790369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr21:33350572-33350938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr21:29484813-29485179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 126
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr21:42384335-42384708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 131
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr21:10151624-10152011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr21:19766684-19767065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr21:7564492-7564096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr21:712764-713161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 88
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr21:9990344-9990727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:8549507-8549901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 128
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr21:27146162-27145764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 127
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr21:4905142-4904738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr21:19258656-19259042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 129
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr21:47764283-47763891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 93
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:4080184-4080576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr21:27124297-27123896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
59, 129
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr21:45151793-45151393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr21:13048367-13047957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr21:24094914-24094527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 52
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr21:643163-643560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr21:29214319-29213918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr21:6623972-6624397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 117
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr21:41155691-41156109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr21:3498328-3498735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 125
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr21:41198582-41198154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr21:22856044-22856466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr21:31253366-31253779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
44, 132
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr21:18568820-18568387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 214
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr21:14760410-14760808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr21:19196337-19195910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 130
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr21:28027633-28028050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr21:36762883-36763313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 51
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:3763908-3763499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:5238225-5238640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
257, 57
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:22194281-22193842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 123
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:44565872-44565477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:45971328-45970927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr21:5649736-5650151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr21:13035218-13034782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr21:17193930-17193495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 210
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr21:29069499-29069070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 132
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr21:46849293-46848880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 92
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:3585528-3585110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:6051336-6051759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:6833882-6834304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 124
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:8618104-8618515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 127
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:11645139-11644712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 129
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:13585230-13584798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:18289492-18289931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 127
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:23586706-23587126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 128
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:23672573-23672999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:25344707-25345118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:28734082-28733658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:37479786-37480218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:38449622-38449198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 96
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:41620949-41621382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 130
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:44251996-44251587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:48637916-48637501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 59
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:49700206-49699783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 133
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr21:5898568-5898149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
71, 127
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr21:33982979-33982554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr21:30849109-30848687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr21:36795433-36795885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 83
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr21:39664559-39664135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr21:39888914-39888464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 122
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr21:3236360-3236767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 86
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr21:30231872-30231427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 181
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr21:20160513-20160951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 123
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr21:81900-82333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
68, 139
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr21:22718951-22718507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 128
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr21:23568038-23568499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr21:26648176-26647723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr21:34010561-34010121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 63
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr21:42500862-42501327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr21:33551-34007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr21:10071099-10070647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr21:11114541-11114996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr21:27863690-27863243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr21:38918044-38918478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 126
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr21:42135794-42135342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 136
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr21:24858141-24858591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 134
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr21:9310875-9311335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 115
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr21:37706577-37706133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 63
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr21:24296935-24296484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 104
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:30592474-30592029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 130
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr21:41974549-41974084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
1-470
               

               
Cow position:
               
chr21:15445249-15444791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 131
               

               
Conread position:
               
1-470
               

               
Cow position:
               
chr21:23606504-23606957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
246, 95
               

               
Conread position:
               
1-479
               

               
Cow position:
               
chr21:17183752-17184212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
1-479
               

               
Cow position:
               
chr21:22860831-22861289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 128
               

               
Conread position:
               
1-479
               

               
Cow position:
               
chr21:40786500-40786973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
1-481
               

               
Cow position:
               
chr21:641414-641881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr21:11706922-11706466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr21:17511606-17512081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr21:19083771-19083278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 131
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr21:25127438-25127907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chr21:4282038-4281573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 121
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chr21:29002332-29001843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
2-168
               

               
Cow position:
               
chr21:7716960-7716790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 129
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr21:13303650-13303838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
67, 124
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr21:48484613-48484417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr21:12961071-12960782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr21:43357430-43357122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
2-331
               

               
Cow position:
               
chr21:13738399-13738707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr21:5426774-5427114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chr21:25382840-25383205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr21:38120938-38121282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chr21:25764465-25764820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
65, 127
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr21:28989443-28989803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr21:1591379-1591740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 131
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr21:23322253-23321885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr21:13128263-13127907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 127
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:21169664-21169275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr21:32339906-32339495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 123
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr21:27521497-27521088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
2-455
               

               
Cow position:
               
chr21:23535547-23535986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 68
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chr21:7709996-7710435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 125
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chr21:10263871-10264309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 84
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chr21:27569330-27568882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
2-486
               

               
Cow position:
               
chr21:41455122-41454628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
12, 121
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr21:34658866-34659061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr21:12973421-12973218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr21:393853-394062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 126
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr21:13898020-13898273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
209, 123
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr21:6102435-6102148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr21:28512364-28512649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
3-315
               

               
Cow position:
               
chr21:18940729-18940441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
186, 23
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:38867744-38867439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr21:20044943-20044609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 170
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:4998655-4998334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 115
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:17475650-17475978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
68, 125
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr21:28211028-28211360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
65, 133
               

               
Conread position:
               
3-357
               

               
Cow position:
               
chr21:10000912-10001256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 43
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr21:4399631-4399996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr21:23801290-23800936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 82
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr21:9416074-9416476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 128
               

               
Conread position:
               
3-423
               

               
Cow position:
               
chr21:42841761-42841343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 85
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr21:3361183-3360767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
3-433
               

               
Cow position:
               
chr21:33997390-33996998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 105
               

               
Conread position:
               
3-442
               

               
Cow position:
               
chr21:41579579-41580016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 132
               

               
Conread position:
               
4-374
               

               
Cow position:
               
chr21:2420337-2420694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
194, 121
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr21:6765714-6765928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 82
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr21:21216307-21216081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chr21:3818050-3818401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 57
               

               
Conread position:
               
5-435
               

               
Cow position:
               
chr21:31702122-31701691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 122
               

               
Conread position:
               
6-256
               

               
Cow position:
               
chr21:2785945-2785696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
62, 121
               

               
Conread position:
               
6-256
               

               
Cow position:
               
chr21:28617425-28617671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
6-256
               

               
Cow position:
               
chr21:42190334-42190093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
206, 60
               

               
Conread position:
               
6-344
               

               
Cow position:
               
chr21:8125966-8125637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
6-369
               

               
Cow position:
               
chr21:27624547-27624892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
6-407
               

               
Cow position:
               
chr21:17643138-17642763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
6-456
               

               
Cow position:
               
chr21:15584575-15584148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
6-485
               

               
Cow position:
               
chr21:44826049-44825569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 120
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr21:39401432-39401745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
9-377
               

               
Cow position:
               
chr21:26244768-26245113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr21:17455222-17455618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
9-419
               

               
Cow position:
               
chr21:47760613-47761009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
60, 117
               

               
Conread position:
               
9-460
               

               
Cow position:
               
chr21:15545533-15545083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
55, 145
               

               
Conread position:
               
9-483
               

               
Cow position:
               
chr21:937878-938321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
9-485
               

               
Cow position:
               
chr21:40589645-40589175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 119
               

               
Conread position:
               
10-246
               

               
Cow position:
               
chr21:17412453-17412225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
200, 56
               

               
Conread position:
               
10-253
               

               
Cow position:
               
chr21:36793731-36793972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
203, 76
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr21:44108846-44109098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr21:31662299-31662595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
57, 110
               

               
Conread position:
               
10-370
               

               
Cow position:
               
chr21:18780134-18779780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
10-389
               

               
Cow position:
               
chr21:13727921-13727553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 104
               

               
Conread position:
               
10-432
               

               
Cow position:
               
chr21:10114490-10114082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 85
               

               
Conread position:
               
10-442
               

               
Cow position:
               
chr21:14464415-14464847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 158
               

               
Conread position:
               
10-475
               

               
Cow position:
               
chr21:18065085-18064632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 118
               

               
Conread position:
               
11-267
               

               
Cow position:
               
chr21:44148-44396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
11-369
               

               
Cow position:
               
chr21:7582070-7581712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 124
               

               
Conread position:
               
11-370
               

               
Cow position:
               
chr21:10538423-10538061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
52, 166
               

               
Conread position:
               
11-446
               

               
Cow position:
               
chr21:28244315-28244732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 75
               

               
Conread position:
               
11-458
               

               
Cow position:
               
chr21:32297671-32297231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
11-486
               

               
Cow position:
               
chr21:44114290-44113837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 40
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr21:17416921-17416575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
13-469
               

               
Cow position:
               
chr21:13840164-13840612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
14-414
               

               
Cow position:
               
chr21:46912384-46912782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 111
               

               
Conread position:
               
14-433
               

               
Cow position:
               
chr21:12153978-12154377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 116
               

               
Conread position:
               
15-266
               

               
Cow position:
               
chr21:5455144-5454901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
48, 55
               

               
Conread position:
               
15-367
               

               
Cow position:
               
chr21:45921215-45920868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
16-282
               

               
Cow position:
               
chr21:21769969-21770235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
16-377
               

               
Cow position:
               
chr21:10633796-10633438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 111
               

               
Conread position:
               
17-227
               

               
Cow position:
               
chr21:10608609-10608400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 111
               

               
Conread position:
               
17-373
               

               
Cow position:
               
chr21:24642364-24642709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
19-389
               

               
Cow position:
               
chr21:11456962-11456591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
56, 122
               

               
Conread position:
               
20-246
               

               
Cow position:
               
chr21:4568136-4568355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
20-368
               

               
Cow position:
               
chr21:10823402-10823751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 193
               

               
Conread position:
               
20-484
               

               
Cow position:
               
chr21:12749376-12748935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 101
               

               
Conread position:
               
21-268
               

               
Cow position:
               
chr21:5985460-5985226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
24-370
               

               
Cow position:
               
chr21:11359890-11360218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
26-253
               

               
Cow position:
               
chr21:39809754-39809971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
27-407
               

               
Cow position:
               
chr21:42007604-42007233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 71
               

               
Conread position:
               
28-287
               

               
Cow position:
               
chr21:18041986-18041736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
178, 38
               

               
Conread position:
               
28-345
               

               
Cow position:
               
chr21:35354394-35354702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
28-435
               

               
Cow position:
               
chr21:44962651-44963051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
28-486
               

               
Cow position:
               
chr21:10005029-10004576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
29-457
               

               
Cow position:
               
chr21:20152806-20153233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
30-445
               

               
Cow position:
               
chr21:28923975-28924388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
30-454
               

               
Cow position:
               
chr21:14452096-14452509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
32-269
               

               
Cow position:
               
chr21:45439389-45439143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr21:11250726-11251008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
37, 183
               

               
Conread position:
               
32-366
               

               
Cow position:
               
chr21:48234298-48233975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
32-431
               

               
Cow position:
               
chr21:6713662-6713274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
32-433
               

               
Cow position:
               
chr21:957528-957921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
32-434
               

               
Cow position:
               
chr21:17637759-17638148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
32-435
               

               
Cow position:
               
chr21:11027497-11027104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
32-456
               

               
Cow position:
               
chr21:9301069-9301500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
33-265
               

               
Cow position:
               
chr21:2293854-2294072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
33-460
               

               
Cow position:
               
chr21:12462109-12461690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
35-260
               

               
Cow position:
               
chr21:34736894-34737114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
35-435
               

               
Cow position:
               
chr21:17875332-17874936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
35-456
               

               
Cow position:
               
chr21:29978899-29978494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
35-482
               

               
Cow position:
               
chr21:13089604-13089163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
36-372
               

               
Cow position:
               
chr21:35569512-35569168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
36-435
               

               
Cow position:
               
chr21:20260456-20260043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
36-435
               

               
Cow position:
               
chr21:47009375-47008993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
41-405
               

               
Cow position:
               
chr21:34151450-34151804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
42-376
               

               
Cow position:
               
chr21:2810273-2809965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
170, 41
               

               
Conread position:
               
43-326
               

               
Cow position:
               
chr21:20192774-20193044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
44-454
               

               
Cow position:
               
chr21:46911-47320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
48-456
               

               
Cow position:
               
chr21:30222218-30222617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
50-456
               

               
Cow position:
               
chr21:2260475-2260073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
271, 42
               

               
Conread position:
               
53-441
               

               
Cow position:
               
chr21:37790116-37789742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 52
               

               
Conread position:
               
54-430
               

               
Cow position:
               
chr21:10561697-10561336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 67
               

               
Conread position:
               
58-310
               

               
Cow position:
               
chr21:11198262-11198014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr21:25629016-25628720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
58-456
               

               
Cow position:
               
chr21:33414197-33413823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
59-423
               

               
Cow position:
               
chr21:20032948-20032590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
62-435
               

               
Cow position:
               
chr21:8206667-8207011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
144, 59
               

               
Conread position:
               
64-246
               

               
Cow position:
               
chr21:9980067-9979900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
64-261
               

               
Cow position:
               
chr21:29224965-29224775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
64-296
               

               
Cow position:
               
chr21:18414947-18415172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
187, 61
               

               
Conread position:
               
64-370
               

               
Cow position:
               
chr21:2657716-2658003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
64-423
               

               
Cow position:
               
chr21:10261178-10261515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
64-434
               

               
Cow position:
               
chr21:11740220-11739866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
64-456
               

               
Cow position:
               
chr21:34663518-34663894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
194, 22
               

               
Conread position:
               
64-480
               

               
Cow position:
               
chr21:27668908-27669305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
153, 63
               

               
Conread position:
               
65-235
               

               
Cow position:
               
chr21:21143799-21143960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
65-261
               

               
Cow position:
               
chr21:42131704-42131509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
65-268
               

               
Cow position:
               
chr21:34722888-34722696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
65-326
               

               
Cow position:
               
chr21:20418787-20418532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
65-356
               

               
Cow position:
               
chr21:21077499-21077780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
71, 64
               

               
Conread position:
               
65-361
               

               
Cow position:
               
chr21:9940297-9940004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
65-369
               

               
Cow position:
               
chr21:3400936-3400639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
174, 60
               

               
Conread position:
               
65-414
               

               
Cow position:
               
chr21:9698189-9697845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
65-434
               

               
Cow position:
               
chr21:18155672-18155311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
65-456
               

               
Cow position:
               
chr21:23980284-23979904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
65-482
               

               
Cow position:
               
chr21:18818379-18817964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
67-434
               

               
Cow position:
               
chr21:38728065-38728409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
216, 16
               

               
Conread position:
               
68-253
               

               
Cow position:
               
chr21:43367945-43368124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
68-370
               

               
Cow position:
               
chr21:40168729-40168432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
69-268
               

               
Cow position:
               
chr21:11639924-11640114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
69-356
               

               
Cow position:
               
chr21:45262910-45262630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
142, 58
               

               
Conread position:
               
69-398
               

               
Cow position:
               
chr21:21633400-21633085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
131, 57
               

               
Conread position:
               
69-423
               

               
Cow position:
               
chr21:16914677-16915023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 54
               

               
Conread position:
               
69-435
               

               
Cow position:
               
chr21:24343363-24343011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
69-454
               

               
Cow position:
               
chr21:9477064-9477437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 54
               

               
Conread position:
               
69-460
               

               
Cow position:
               
chr21:27810310-27810670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
69-464
               

               
Cow position:
               
chr21:12916524-12916135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
70-296
               

               
Cow position:
               
chr21:38664541-38664759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
70-321
               

               
Cow position:
               
chr21:36789700-36789940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
143, 49
               

               
Conread position:
               
70-365
               

               
Cow position:
               
chr21:17008884-17009169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
70-435
               

               
Cow position:
               
chr21:10816925-10817288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
139, 53
               

               
Conread position:
               
70-456
               

               
Cow position:
               
chr21:33580315-33580686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
70-470
               

               
Cow position:
               
chr21:6017519-6017915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
71-442
               

               
Cow position:
               
chr21:22121426-22121763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
73-268
               

               
Cow position:
               
chr21:8527571-8527392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
73-456
               

               
Cow position:
               
chr21:17560023-17559641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 49
               

               
Conread position:
               
75-442
               

               
Cow position:
               
chr21:30835270-30835627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 50
               

               
Conread position:
               
75-474
               

               
Cow position:
               
chr21:6997846-6998235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 37
               

               
Conread position:
               
76-435
               

               
Cow position:
               
chr21:47363834-47363470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
77-414
               

               
Cow position:
               
chr21:20589227-20589547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
169, 10
               

               
Conread position:
               
78-453
               

               
Cow position:
               
chr21:22210333-22209971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 48
               

               
Conread position:
               
79-451
               

               
Cow position:
               
chr21:19067441-19067804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
212, 45
               

               
Conread position:
               
81-419
               

               
Cow position:
               
chr21:9036209-9036539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
82-287
               

               
Cow position:
               
chr21:13495455-13495654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
129, 41
               

               
Conread position:
               
86-294
               

               
Cow position:
               
chr21:37014484-37014288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
86-432
               

               
Cow position:
               
chr21:10858735-10859061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
86-433
               

               
Cow position:
               
chr21:16152350-16152692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
86-474
               

               
Cow position:
               
chr21:30256350-30255963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
264, 11
               

               
Conread position:
               
87-422
               

               
Cow position:
               
chr21:10979021-10978706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
87-432
               

               
Cow position:
               
chr21:28237794-28237448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
87-435
               

               
Cow position:
               
chr21:40432368-40432718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
88-337
               

               
Cow position:
               
chr21:46140962-46141209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
88-423
               

               
Cow position:
               
chr21:10410139-10410466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
88-433
               

               
Cow position:
               
chr21:47714086-47713755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
89-370
               

               
Cow position:
               
chr21:27429388-27429645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
91-306
               

               
Cow position:
               
chr21:33360110-33359913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
91-361
               

               
Cow position:
               
chr21:46552182-46551916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
226, 34
               

               
Conread position:
               
91-438
               

               
Cow position:
               
chr21:44214048-44214368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
91-481
               

               
Cow position:
               
chr21:36909858-36910240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
341, 31
               

               
Conread position:
               
93-456
               

               
Cow position:
               
chr21:47719373-47719028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
94-435
               

               
Cow position:
               
chr21:10743317-10743643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
95-433
               

               
Cow position:
               
chr21:1511219-1511538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
95-477
               

               
Cow position:
               
chr21:40266049-40266415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
97-435
               

               
Cow position:
               
chr21:41617817-41617485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
111, 99
               

               
Conread position:
               
99-283
               

               
Cow position:
               
chr21:19210646-19210821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
177, 24
               

               
Conread position:
               
99-438
               

               
Cow position:
               
chr21:19060165-19059834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
100-320
               

               
Cow position:
               
chr21:17929909-17929693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
100-457
               

               
Cow position:
               
chr21:17890231-17890580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 28
               

               
Conread position:
               
105-462
               

               
Cow position:
               
chr21:8426379-8426723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
210, 22
               

               
Conread position:
               
107-454
               

               
Cow position:
               
chr21:41140785-41140441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 112
               

               
Conread position:
               
112-479
               

               
Cow position:
               
chr21:18060018-18059663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
169, 55
               

               
Conread position:
               
113-400
               

               
Cow position:
               
chr21:977205-976921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
113-435
               

               
Cow position:
               
chr21:48527348-48527670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
16, 94
               

               
Conread position:
               
114-369
               

               
Cow position:
               
chr21:29014620-29014365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 53
               

               
Conread position:
               
115-353
               

               
Cow position:
               
chr21:6387939-6388176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
115-456
               

               
Cow position:
               
chr21:17982917-17983246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
86, 65
               

               
Conread position:
               
116-445
               

               
Cow position:
               
chr21:5464689-5465011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
90, 133
               

               
Conread position:
               
118-442
               

               
Cow position:
               
chr21:11779584-11779277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
119-268
               

               
Cow position:
               
chr21:22720172-22720320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
119-354
               

               
Cow position:
               
chr21:6758292-6758521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
119-459
               

               
Cow position:
               
chr21:22014132-22014470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 66
               

               
Conread position:
               
120-313
               

               
Cow position:
               
chr21:297699-297891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
120-373
               

               
Cow position:
               
chr21:43259168-43259416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
120-434
               

               
Cow position:
               
chr21:2103599-2103933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 130
               

               
Conread position:
               
120-437
               

               
Cow position:
               
chr21:10292438-10292752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
299, 95
               

               
Conread position:
               
120-442
               

               
Cow position:
               
chr21:15544272-15543978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
120-445
               

               
Cow position:
               
chr21:868979-868654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 66
               

               
Conread position:
               
120-451
               

               
Cow position:
               
chr21:8349274-8349592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 153
               

               
Conread position:
               
121-414
               

               
Cow position:
               
chr21:7377982-7377690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
121-433
               

               
Cow position:
               
chr21:21907482-21907189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
300, 85
               

               
Conread position:
               
125-381
               

               
Cow position:
               
chr21:19874400-19874152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
151, 7
               

               
Conread position:
               
125-435
               

               
Cow position:
               
chr21:10657151-10656847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
127-470
               

               
Cow position:
               
chr21:10072098-10072457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
128-373
               

               
Cow position:
               
chr21:19513819-19514051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
113, 79
               

               
Conread position:
               
128-406
               

               
Cow position:
               
chr21:34049925-34049661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
128-443
               

               
Cow position:
               
chr21:28919570-28919269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 86
               

               
Conread position:
               
128-484
               

               
Cow position:
               
chr21:29014959-29014611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
85, 70
               

               
Conread position:
               
129-443
               

               
Cow position:
               
chr21:14597461-14597158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
129-456
               

               
Cow position:
               
chr21:13656674-13656358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
320, 38
               

               
Conread position:
               
129-464
               

               
Cow position:
               
chr21:7394337-7394651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
129-486
               

               
Cow position:
               
chr21:36910695-36911042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
130-331
               

               
Cow position:
               
chr21:10090038-10089837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 81
               

               
Conread position:
               
130-423
               

               
Cow position:
               
chr21:9707316-9707026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 63
               

               
Conread position:
               
131-453
               

               
Cow position:
               
chr21:13889693-13889380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
56, 78
               

               
Conread position:
               
132-417
               

               
Cow position:
               
chr21:41522449-41522172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
201, 66
               

               
Conread position:
               
136-418
               

               
Cow position:
               
chr21:36696129-36695850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 71
               

               
Conread position:
               
137-435
               

               
Cow position:
               
chr21:37640520-37640820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
139-352
               

               
Cow position:
               
chr21:471642-471850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
139-358
               

               
Cow position:
               
chr21:42209666-42209447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-432
               

               
Cow position:
               
chr21:10883959-10883667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
138, 133
               

               
Conread position:
               
140-369
               

               
Cow position:
               
chr21:734562-734782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
140-457
               

               
Cow position:
               
chr21:43388317-43388637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
118, 67
               

               
Conread position:
               
146-423
               

               
Cow position:
               
chr21:8961502-8961240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
275, 52
               

               
Conread position:
               
146-481
               

               
Cow position:
               
chr21:20165613-20165932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
147-435
               

               
Cow position:
               
chr21:13842461-13842747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
147-456
               

               
Cow position:
               
chr21:14027027-14027340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
67, 195
               

               
Conread position:
               
148-345
               

               
Cow position:
               
chr21:37384459-37384652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
148-388
               

               
Cow position:
               
chr21:31159376-31159605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
148-435
               

               
Cow position:
               
chr21:16604338-16604060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
131, 22
               

               
Conread position:
               
148-436
               

               
Cow position:
               
chr21:38720226-38720504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
148-444
               

               
Cow position:
               
chr21:6317706-6317423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
149-423
               

               
Cow position:
               
chr21:8950155-8950435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
55, 197
               

               
Conread position:
               
149-455
               

               
Cow position:
               
chr21:28030263-28030560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
260, 56
               

               
Conread position:
               
153-414
               

               
Cow position:
               
chr21:42328687-42328428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
153-451
               

               
Cow position:
               
chr21:16083138-16082843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
153-459
               

               
Cow position:
               
chr21:18318692-18318994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
282, 45
               

               
Conread position:
               
155-451
               

               
Cow position:
               
chr21:742266-742545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
155-463
               

               
Cow position:
               
chr21:46599337-46599642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 63
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr21:8431122-8430799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
157-435
               

               
Cow position:
               
chr21:12559680-12559959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
133, 206
               

               
Conread position:
               
158-435
               

               
Cow position:
               
chr21:44724381-44724122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
159-423
               

               
Cow position:
               
chr21:829225-828968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
163-433
               

               
Cow position:
               
chr21:32393061-32392810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
191, 35
               

               
Conread position:
               
170-434
               

               
Cow position:
               
chr21:8546021-8545767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
172-345
               

               
Cow position:
               
chr21:12104362-12104535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
175-407
               

               
Cow position:
               
chr21:7768435-7768661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
33, 105
               

               
Conread position:
               
175-418
               

               
Cow position:
               
chr21:36508242-36508470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
175-433
               

               
Cow position:
               
chr21:13588763-13589014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
175-442
               

               
Cow position:
               
chr21:41918245-41917978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
175-454
               

               
Cow position:
               
chr21:46132576-46132865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
182, 30
               

               
Conread position:
               
175-482
               

               
Cow position:
               
chr21:1764863-1764557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 31
               

               
Conread position:
               
175-483
               

               
Cow position:
               
chr21:12739080-12739391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 39
               

               
Conread position:
               
178-434
               

               
Cow position:
               
chr21:19561563-19561311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
179-423
               

               
Cow position:
               
chr21:44074698-44074934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
179-447
               

               
Cow position:
               
chr21:41287790-41287529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
255, 180
               

               
Conread position:
               
179-455
               

               
Cow position:
               
chr21:71590-71861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
256, 140
               

               
Conread position:
               
179-483
               

               
Cow position:
               
chr21:26563154-26562857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
180-412
               

               
Cow position:
               
chr21:10009813-10009583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
181-435
               

               
Cow position:
               
chr21:29658286-29658528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
182-419
               

               
Cow position:
               
chr21:39319406-39319169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
184-364
               

               
Cow position:
               
chr21:7583856-7584038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
184-370
               

               
Cow position:
               
chr21:19360167-19359982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
185-380
               

               
Cow position:
               
chr21:9334495-9334692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
185-426
               

               
Cow position:
               
chr21:2550231-2550471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
57, 177
               

               
Conread position:
               
185-456
               

               
Cow position:
               
chr21:31652403-31652662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
185-470
               

               
Cow position:
               
chr21:16793800-16794083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
186-460
               

               
Cow position:
               
chr21:10980371-10980637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
187-434
               

               
Cow position:
               
chr21:11625759-11625999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
187-455
               

               
Cow position:
               
chr21:36682334-36682601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 205
               

               
Conread position:
               
190-435
               

               
Cow position:
               
chr21:10130158-10130401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
192-417
               

               
Cow position:
               
chr21:13462729-13462959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 171
               

               
Conread position:
               
192-432
               

               
Cow position:
               
chr21:8241931-8242166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
194-463
               

               
Cow position:
               
chr21:31279278-31279535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
133, 12
               

               
Conread position:
               
195-350
               

               
Cow position:
               
chr21:7823381-7823538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
195-449
               

               
Cow position:
               
chr21:28907523-28907281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
112, 23
               

               
Conread position:
               
196-451
               

               
Cow position:
               
chr21:46612774-46612534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
197-457
               

               
Cow position:
               
chr21:42144850-42145095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
199-423
               

               
Cow position:
               
chr21:12223004-12222780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 173
               

               
Conread position:
               
199-435
               

               
Cow position:
               
chr21:11174262-11174498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
133, 173
               

               
Conread position:
               
202-423
               

               
Cow position:
               
chr21:26018405-26018623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
204-435
               

               
Cow position:
               
chr21:12322527-12322752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
206-435
               

               
Cow position:
               
chr21:8924392-8924625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 33
               

               
Conread position:
               
207-435
               

               
Cow position:
               
chr21:17252946-17252723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
207-435
               

               
Cow position:
               
chr21:27677512-27677737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 66
               

               
Conread position:
               
207-467
               

               
Cow position:
               
chr21:9418123-9417854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 7
               

               
Conread position:
               
207-480
               

               
Cow position:
               
chr21:46809740-46809464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 169
               

               
Conread position:
               
207-484
               

               
Cow position:
               
chr21:42562663-42562944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
151, 35
               

               
Conread position:
               
208-378
               

               
Cow position:
               
chr21:8213246-8213079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
208-378
               

               
Cow position:
               
chr21:44592177-44592008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 64
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr21:49276165-49276370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 157
               

               
Conread position:
               
209-433
               

               
Cow position:
               
chr21:8713926-8713705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
209-433
               

               
Cow position:
               
chr21:19702764-19702982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 126
               

               
Conread position:
               
209-434
               

               
Cow position:
               
chr21:36023157-36022934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
209-454
               

               
Cow position:
               
chr21:41610200-41610454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
209-456
               

               
Cow position:
               
chr21:17403817-17403571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
137, 127
               

               
Conread position:
               
209-484
               

               
Cow position:
               
chr21:40475533-40475810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 11
               

               
Conread position:
               
210-365
               

               
Cow position:
               
chr21:34210045-34209892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
210-423
               

               
Cow position:
               
chr21:24061157-24060949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
210-431
               

               
Cow position:
               
chr21:7066347-7066135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
136, 67
               

               
Conread position:
               
210-435
               

               
Cow position:
               
chr21:19624433-19624658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
210-443
               

               
Cow position:
               
chr21:24266531-24266299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
210-455
               

               
Cow position:
               
chr21:24797691-24797928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
211-362
               

               
Cow position:
               
chr21:37838031-37837880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-435
               

               
Cow position:
               
chr21:16498554-16498769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
211-458
               

               
Cow position:
               
chr21:12310512-12310750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
211-459
               

               
Cow position:
               
chr21:9278558-9278804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
212-360
               

               
Cow position:
               
chr21:38440295-38440443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
214-405
               

               
Cow position:
               
chr21:20318551-20318743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
214-423
               

               
Cow position:
               
chr21:40291708-40291507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
214-434
               

               
Cow position:
               
chr21:17519058-17519281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
214-456
               

               
Cow position:
               
chr21:19868916-19868688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
214-460
               

               
Cow position:
               
chr21:39393786-39394027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
112, 147
               

               
Conread position:
               
215-370
               

               
Cow position:
               
chr21:11057839-11057689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
215-373
               

               
Cow position:
               
chr21:13163898-13164056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
215-414
               

               
Cow position:
               
chr21:28191395-28191582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
215-423
               

               
Cow position:
               
chr21:18471617-18471817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
206, 25
               

               
Conread position:
               
215-423
               

               
Cow position:
               
chr21:20163747-20163949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
215-434
               

               
Cow position:
               
chr21:13960727-13960940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
215-434
               

               
Cow position:
               
chr21:35084558-35084341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
121, 134
               

               
Conread position:
               
215-436
               

               
Cow position:
               
chr21:28792445-28792668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
215-455
               

               
Cow position:
               
chr21:30980538-30980283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
158, 66
               

               
Conread position:
               
215-459
               

               
Cow position:
               
chr21:9504905-9505146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
64, 57
               

               
Conread position:
               
216-382
               

               
Cow position:
               
chr21:802277-802110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
216-422
               

               
Cow position:
               
chr21:22005869-22005659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
216-456
               

               
Cow position:
               
chr21:44829719-44829480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
229, 145
               

               
Conread position:
               
216-459
               

               
Cow position:
               
chr21:8648303-8648556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
163, 123
               

               
Conread position:
               
217-435
               

               
Cow position:
               
chr21:17842956-17842741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
217-471
               

               
Cow position:
               
chr21:20213736-20213480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
218-435
               

               
Cow position:
               
chr21:13674610-13674396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
218-452
               

               
Cow position:
               
chr21:24875394-24875623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 157
               

               
Conread position:
               
218-457
               

               
Cow position:
               
chr21:13580455-13580692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
231, 118
               

               
Conread position:
               
218-463
               

               
Cow position:
               
chr21:31246306-31246554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
219-435
               

               
Cow position:
               
chr21:17155908-17155694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
166, 11
               

               
Conread position:
               
219-469
               

               
Cow position:
               
chr21:13225758-13226007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
222-414
               

               
Cow position:
               
chr21:18341264-18341455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 147
               

               
Conread position:
               
223-433
               

               
Cow position:
               
chr21:1562495-1562278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
223-435
               

               
Cow position:
               
chr21:43692863-43693071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 154
               

               
Conread position:
               
223-445
               

               
Cow position:
               
chr21:27712196-27711970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
78, 150
               

               
Conread position:
               
223-469
               

               
Cow position:
               
chr21:22313481-22313725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 49
               

               
Conread position:
               
224-434
               

               
Cow position:
               
chr21:18721057-18720852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
224-443
               

               
Cow position:
               
chr21:30938624-30938404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
46, 141
               

               
Conread position:
               
226-451
               

               
Cow position:
               
chr21:700742-700518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
226-457
               

               
Cow position:
               
chr21:3415704-3415933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
196, 128
               

               
Conread position:
               
226-479
               

               
Cow position:
               
chr21:37928699-37928948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
227-370
               

               
Cow position:
               
chr21:14228229-14228086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
227-410
               

               
Cow position:
               
chr21:6736138-6735964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
227-419
               

               
Cow position:
               
chr21:14360416-14360606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
227-434
               

               
Cow position:
               
chr21:41043268-41043064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
227-435
               

               
Cow position:
               
chr21:41040995-41041202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
228-471
               

               
Cow position:
               
chr21:2537087-2536852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
229-419
               

               
Cow position:
               
chr21:19148163-19148354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
130, 89
               

               
Conread position:
               
229-434
               

               
Cow position:
               
chr21:12541346-12541144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
230-419
               

               
Cow position:
               
chr21:6153855-6154041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
231-484
               

               
Cow position:
               
chr21:38943564-38943305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 157
               

               
Conread position:
               
232-423
               

               
Cow position:
               
chr21:19161768-19161957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
232-434
               

               
Cow position:
               
chr21:13303848-13304048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
232-435
               

               
Cow position:
               
chr21:9030037-9030246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
232-435
               

               
Cow position:
               
chr21:31659091-31658900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
233-435
               

               
Cow position:
               
chr21:13090431-13090631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
233-435
               

               
Cow position:
               
chr21:26735466-26735651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
234-435
               

               
Cow position:
               
chr21:45683870-45684075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
33, 147
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr21:34738635-34738832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 126
               

               
Conread position:
               
234-454
               

               
Cow position:
               
chr21:17531187-17531408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
235-466
               

               
Cow position:
               
chr21:30969996-30970219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
224, 11
               

               
Conread position:
               
235-481
               

               
Cow position:
               
chr21:48482469-48482232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
236-454
               

               
Cow position:
               
chr21:6584078-6583866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
237-476
               

               
Cow position:
               
chr21:31038206-31037967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
238-413
               

               
Cow position:
               
chr21:12640531-12640705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 127
               

               
Conread position:
               
239-435
               

               
Cow position:
               
chr21:12348828-12349022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
239-485
               

               
Cow position:
               
chr21:27409669-27409440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
240-426
               

               
Cow position:
               
chr21:39268865-39269048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
106, 76
               

               
Conread position:
               
241-423
               

               
Cow position:
               
chr21:43368393-43368574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
180, 121
               

               
Conread position:
               
241-456
               

               
Cow position:
               
chr21:14228837-14228620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
242-433
               

               
Cow position:
               
chr21:29418638-29418823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
242-434
               

               
Cow position:
               
chr21:22211319-22211509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
242-458
               

               
Cow position:
               
chr21:38482449-38482660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
197, 32
               

               
Conread position:
               
242-461
               

               
Cow position:
               
chr21:22525116-22524897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
242-486
               

               
Cow position:
               
chr21:43316829-43316588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
230, 133
               

               
Conread position:
               
243-457
               

               
Cow position:
               
chr21:7201216-7201427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
243-470
               

               
Cow position:
               
chr21:26828904-26828687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
244-455
               

               
Cow position:
               
chr21:36280358-36280568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
102, 83
               

               
Conread position:
               
244-458
               

               
Cow position:
               
chr21:18578494-18578292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
245-414
               

               
Cow position:
               
chr21:17302572-17302739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
245-432
               

               
Cow position:
               
chr21:42017534-42017350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
245-435
               

               
Cow position:
               
chr21:11743435-11743239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
245-461
               

               
Cow position:
               
chr21:42189688-42189480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
246-451
               

               
Cow position:
               
chr21:14745839-14746043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
199, 113
               

               
Conread position:
               
247-485
               

               
Cow position:
               
chr21:874392-874626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 92
               

               
Conread position:
               
248-433
               

               
Cow position:
               
chr21:11099899-11099717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
248-434
               

               
Cow position:
               
chr21:790241-790054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
248-435
               

               
Cow position:
               
chr21:8986094-8986280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
248-455
               

               
Cow position:
               
chr21:745247-745444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
248-455
               

               
Cow position:
               
chr21:18783397-18783189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
186, 95
               

               
Conread position:
               
248-455
               

               
Cow position:
               
chr21:42131283-42131065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
121, 204
               

               
Conread position:
               
248-458
               

               
Cow position:
               
chr21:4108847-4109052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
248-469
               

               
Cow position:
               
chr21:10587415-10587197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
248-484
               

               
Cow position:
               
chr21:5214420-5214653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
249-434
               

               
Cow position:
               
chr21:14247208-14247389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
249-438
               

               
Cow position:
               
chr21:32648116-32647929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
250-419
               

               
Cow position:
               
chr21:13985660-13985827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
250-467
               

               
Cow position:
               
chr21:4585082-4584866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
250-476
               

               
Cow position:
               
chr21:646239-646020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
250-486
               

               
Cow position:
               
chr21:10138009-10138244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 90
               

               
Conread position:
               
251-434
               

               
Cow position:
               
chr21:20193045-20193226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
251-435
               

               
Cow position:
               
chr21:24350927-24351105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chr21:9341882-9341712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
252-457
               

               
Cow position:
               
chr21:18449829-18450031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
252-476
               

               
Cow position:
               
chr21:15305223-15304995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
202, 124
               

               
Conread position:
               
253-413
               

               
Cow position:
               
chr21:39681213-39681371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 86
               

               
Conread position:
               
253-434
               

               
Cow position:
               
chr21:6291823-6292002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
253-435
               

               
Cow position:
               
chr21:11353137-11353318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
177, 106
               

               
Conread position:
               
253-435
               

               
Cow position:
               
chr21:14595991-14596175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
253-469
               

               
Cow position:
               
chr21:8494717-8494930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 86
               

               
Conread position:
               
254-433
               

               
Cow position:
               
chr21:45651382-45651209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
254-434
               

               
Cow position:
               
chr21:39278219-39278039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
254-479
               

               
Cow position:
               
chr21:7539450-7539229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
255-482
               

               
Cow position:
               
chr21:10660814-10660586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
193, 120
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr21:27744105-27744304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
256-460
               

               
Cow position:
               
chr21:58524-58728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
256-461
               

               
Cow position:
               
chr21:11006691-11006487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
257-377
               

               
Cow position:
               
chr21:28617869-28617989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
257-456
               

               
Cow position:
               
chr21:16796932-16797126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
258-445
               

               
Cow position:
               
chr21:36121309-36121493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
259-456
               

               
Cow position:
               
chr21:1464426-1464622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 103
               

               
Conread position:
               
259-476
               

               
Cow position:
               
chr21:874605-874817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
261-464
               

               
Cow position:
               
chr21:27567979-27568176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
262-445
               

               
Cow position:
               
chr21:16120075-16119898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
263-445
               

               
Cow position:
               
chr21:37495859-37495679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 94
               

               
Conread position:
               
263-460
               

               
Cow position:
               
chr21:19220715-19220516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
263-482
               

               
Cow position:
               
chr21:12473973-12473758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
199, 40
               

               
Conread position:
               
277-423
               

               
Cow position:
               
chr21:45537285-45537430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
277-433
               

               
Cow position:
               
chr21:6041885-6042041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
277-434
               

               
Cow position:
               
chr21:47860699-47860854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 91
               

               
Conread position:
               
277-435
               

               
Cow position:
               
chr21:15271336-15271185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
277-435
               

               
Cow position:
               
chr21:31278284-31278442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
277-441
               

               
Cow position:
               
chr21:32272021-32272190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
277-443
               

               
Cow position:
               
chr21:29011869-29011714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
277-468
               

               
Cow position:
               
chr21:10829769-10829582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
277-471
               

               
Cow position:
               
chr21:24757041-24757227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
277-481
               

               
Cow position:
               
chr21:42905297-42905094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 82
               

               
Conread position:
               
278-423
               

               
Cow position:
               
chr21:7424912-7424771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
278-432
               

               
Cow position:
               
chr21:42355732-42355892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
278-480
               

               
Cow position:
               
chr21:19394781-19394586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
279-442
               

               
Cow position:
               
chr21:32536499-32536652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
279-443
               

               
Cow position:
               
chr21:43655805-43655964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
279-456
               

               
Cow position:
               
chr21:3135766-3135592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
158, 99
               

               
Conread position:
               
279-456
               

               
Cow position:
               
chr21:18495324-18495490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
279-456
               

               
Cow position:
               
chr21:28882284-28882457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
279-457
               

               
Cow position:
               
chr21:34722912-34723090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
280-435
               

               
Cow position:
               
chr21:48205117-48204964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
280-449
               

               
Cow position:
               
chr21:41437712-41437880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
280-464
               

               
Cow position:
               
chr21:42047938-42047756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
169, 87
               

               
Conread position:
               
281-435
               

               
Cow position:
               
chr21:5344983-5345135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
281-456
               

               
Cow position:
               
chr21:34727312-34727478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
284-432
               

               
Cow position:
               
chr21:31258574-31258720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
287-456
               

               
Cow position:
               
chr21:19236859-19236692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
152, 7
               

               
Conread position:
               
291-482
               

               
Cow position:
               
chr21:19340117-19339929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
292-431
               

               
Cow position:
               
chr21:47784708-47784845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
293-434
               

               
Cow position:
               
chr21:40916600-40916734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
293-481
               

               
Cow position:
               
chr21:30794309-30794125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
298-456
               

               
Cow position:
               
chr21:34209894-34209738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
150, 63
               

               
Conread position:
               
299-460
               

               
Cow position:
               
chr21:48242933-48242771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
299-482
               

               
Cow position:
               
chr21:5476702-5476885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
301-456
               

               
Cow position:
               
chr21:16099440-16099285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-470
               

               
Cow position:
               
chr21:30359221-30359060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
136, 6
               

               
Conread position:
               
302-423
               

               
Cow position:
               
chr21:7535420-7535302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
303-483
               

               
Cow position:
               
chr21:40821768-40821593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
149, 56
               

               
Conread position:
               
307-442
               

               
Cow position:
               
chr21:37014297-37014164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
310-434
               

               
Cow position:
               
chr21:42227565-42227444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
311-433
               

               
Cow position:
               
chr21:41829246-41829126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
311-456
               

               
Cow position:
               
chr21:49144868-49144725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               
Show alignments to all cow chromosomes.