Non-Coding RNA Search

Cow genome map


           Conread name:
           rfhi4021b_l19.y1
        

               Conread position:
               1-166
               

               Cow position:
               chrX:2206751-2206595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               1-166
               

               Cow position:
               chrX:4123628-4123793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-166
               

               Cow position:
               chrX:16324171-16324009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               84, 124
               

               Conread position:
               1-191
               

               Cow position:
               chrX:38967443-38967628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               72, 94
               

               Conread position:
               1-194
               

               Cow position:
               chrX:33020278-33020467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               68, 128
               

               Conread position:
               1-195
               

               Cow position:
               chrX:2648558-2648369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               66, 124
               

               Conread position:
               1-196
               

               Cow position:
               chrX:48684430-48684239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               183, 129
               

               Conread position:
               1-202
               

               Cow position:
               chrX:35388113-35387911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               68, 134
               

               Conread position:
               1-203
               

               Cow position:
               chrX:42339143-42338954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               68, 89
               

               Conread position:
               1-204
               

               Cow position:
               chrX:2383281-2383482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               66, 124
               

               Conread position:
               1-204
               

               Cow position:
               chrX:19019318-19019112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               71, 131
               

               Conread position:
               1-204
               

               Cow position:
               chrX:35284416-35284613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               1-207
               

               Cow position:
               chrX:42282225-42282424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               71, 125
               

               Conread position:
               1-212
               

               Cow position:
               chrX:46315588-46315376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               65, 134
               

               Conread position:
               1-216
               

               Cow position:
               chrX:35609779-35609993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               68, 127
               

               Conread position:
               1-235
               

               Cow position:
               chrX:20582823-20583044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               71, 95
               

               Conread position:
               1-238
               

               Cow position:
               chrX:23497872-23497642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               71, 87
               

               Conread position:
               1-243
               

               Cow position:
               chrX:45015379-45015606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               1-245
               

               Cow position:
               chrX:26285772-26286013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               63, 127
               

               Conread position:
               1-246
               

               Cow position:
               chrX:10095819-10096065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               109, 101
               

               Conread position:
               1-250
               

               Cow position:
               chrX:9997541-9997297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               66, 124
               

               Conread position:
               1-250
               

               Cow position:
               chrX:45412862-45412624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               68, 106
               

               Conread position:
               1-251
               

               Cow position:
               chrX:41743705-41743952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 81
               

               Conread position:
               1-253
               

               Cow position:
               chrX:12115832-12116087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 211
               

               Conread position:
               1-253
               

               Cow position:
               chrX:47379674-47379427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               143, 63
               

               Conread position:
               1-256
               

               Cow position:
               chrX:14924793-14925043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               197
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               68, 27
               

               Conread position:
               1-256
               

               Cow position:
               chrX:29509651-29509395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 128
               

               Conread position:
               1-256
               

               Cow position:
               chrX:40647770-40648029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 219
               

               Conread position:
               1-257
               

               Cow position:
               chrX:36250069-36249817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               70, 125
               

               Conread position:
               1-258
               

               Cow position:
               chrX:28157278-28157543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               48, 140
               

               Conread position:
               1-260
               

               Cow position:
               chrX:42994407-42994660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               206
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               71, 47
               

               Conread position:
               1-261
               

               Cow position:
               chrX:19015235-19015485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               71, 61
               

               Conread position:
               1-261
               

               Cow position:
               chrX:40452420-40452170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               66, 129
               

               Conread position:
               1-263
               

               Cow position:
               chrX:17497889-17498135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 78
               

               Conread position:
               1-264
               

               Cow position:
               chrX:35681139-35681393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               1-265
               

               Cow position:
               chrX:42874770-42875035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 131
               

               Conread position:
               1-267
               

               Cow position:
               chrX:28105713-28105972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               71, 125
               

               Conread position:
               1-268
               

               Cow position:
               chrX:8070907-8070644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               67, 14
               

               Conread position:
               1-268
               

               Cow position:
               chrX:12018068-12018347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 209
               

               Conread position:
               1-268
               

               Cow position:
               chrX:28845638-28845888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               192, 51
               

               Conread position:
               1-268
               

               Cow position:
               chrX:35042012-35042273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               68, 131
               

               Conread position:
               1-269
               

               Cow position:
               chrX:10437872-10437611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               71, 130
               

               Conread position:
               1-269
               

               Cow position:
               chrX:40788997-40789268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               48, 135
               

               Conread position:
               1-270
               

               Cow position:
               chrX:30162789-30163057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               66, 130
               

               Conread position:
               1-270
               

               Cow position:
               chrX:48243659-48243409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1-271
               

               Cow position:
               chrX:25232383-25232651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               48, 127
               

               Conread position:
               1-271
               

               Cow position:
               chrX:47191606-47191348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               198, 67
               

               Conread position:
               1-272
               

               Cow position:
               chrX:18456185-18456465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               47, 132
               

               Conread position:
               1-272
               

               Cow position:
               chrX:20752052-20752315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 82
               

               Conread position:
               1-273
               

               Cow position:
               chrX:41198897-41199168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 126
               

               Conread position:
               1-289
               

               Cow position:
               chrX:24105419-24105700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               63, 126
               

               Conread position:
               1-291
               

               Cow position:
               chrX:678775-678477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               63, 110
               

               Conread position:
               1-296
               

               Cow position:
               chrX:42507854-42507565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 163
               

               Conread position:
               1-304
               

               Cow position:
               chrX:7497036-7497334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               72, 128
               

               Conread position:
               1-304
               

               Cow position:
               chrX:37843513-37843808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               222
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               72, 129
               

               Conread position:
               1-306
               

               Cow position:
               chrX:13323204-13322894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               66, 92
               

               Conread position:
               1-309
               

               Cow position:
               chrX:40692945-40692655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               175, 44
               

               Conread position:
               1-311
               

               Cow position:
               chrX:26440987-26440687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 127
               

               Conread position:
               1-313
               

               Cow position:
               chrX:2467672-2467984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               228
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               65, 131
               

               Conread position:
               1-313
               

               Cow position:
               chrX:38936493-38936800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               71, 119
               

               Conread position:
               1-315
               

               Cow position:
               chrX:26625884-26625569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 137
               

               Conread position:
               1-315
               

               Cow position:
               chrX:27680194-27680500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 122
               

               Conread position:
               1-315
               

               Cow position:
               chrX:42171507-42171194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 128
               

               Conread position:
               1-320
               

               Cow position:
               chrX:17631010-17630695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               71, 127
               

               Conread position:
               1-320
               

               Cow position:
               chrX:32309898-32310212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               66, 129
               

               Conread position:
               1-324
               

               Cow position:
               chrX:35224093-35224407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 13
               

               Conread position:
               1-325
               

               Cow position:
               chrX:754751-755076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               68, 130
               

               Conread position:
               1-326
               

               Cow position:
               chrX:47967392-47967720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               71, 126
               

               Conread position:
               1-330
               

               Cow position:
               chrX:44835023-44834679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               71, 131
               

               Conread position:
               1-330
               

               Cow position:
               chrX:45089236-45089563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               68, 31
               

               Conread position:
               1-330
               

               Cow position:
               chrX:46722948-46722617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               68, 131
               

               Conread position:
               1-330
               

               Cow position:
               chrX:48195248-48194918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               68, 128
               

               Conread position:
               1-334
               

               Cow position:
               chrX:11856222-11856551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 27
               

               Conread position:
               1-335
               

               Cow position:
               chrX:43049137-43049453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               66, 132
               

               Conread position:
               1-336
               

               Cow position:
               chrX:8925498-8925822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               1-341
               

               Cow position:
               chrX:11455260-11454921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               240
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               122, 12
               

               Conread position:
               1-343
               

               Cow position:
               chrX:19690010-19690345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 171
               

               Conread position:
               1-344
               

               Cow position:
               chrX:1514608-1514288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               1-344
               

               Cow position:
               chrX:35413425-35413741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 85
               

               Conread position:
               1-345
               

               Cow position:
               chrX:39558554-39558217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 93
               

               Conread position:
               1-347
               

               Cow position:
               chrX:36778200-36778532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               71, 130
               

               Conread position:
               1-348
               

               Cow position:
               chrX:488282-488639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               66, 132
               

               Conread position:
               1-349
               

               Cow position:
               chrX:11082821-11082486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               245
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               72, 124
               

               Conread position:
               1-351
               

               Cow position:
               chrX:47054734-47054387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               245
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               87, 41
               

               Conread position:
               1-352
               

               Cow position:
               chrX:37119392-37119731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               81, 53
               

               Conread position:
               1-352
               

               Cow position:
               chrX:41122864-41123198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 63
               

               Conread position:
               1-353
               

               Cow position:
               chrX:32743331-32743673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               208, 139
               

               Conread position:
               1-357
               

               Cow position:
               chrX:7571699-7572050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 121
               

               Conread position:
               1-357
               

               Cow position:
               chrX:32623375-32623714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               71, 89
               

               Conread position:
               1-357
               

               Cow position:
               chrX:43527296-43527652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 207
               

               Conread position:
               1-360
               

               Cow position:
               chrX:3130374-3130718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               71, 86
               

               Conread position:
               1-362
               

               Cow position:
               chrX:20801572-20801919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               48, 87
               

               Conread position:
               1-363
               

               Cow position:
               chrX:29289369-29289728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 130
               

               Conread position:
               1-364
               

               Cow position:
               chrX:30543494-30543134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               71, 19
               

               Conread position:
               1-365
               

               Cow position:
               chrX:45414507-45414155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               239
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               63, 124
               

               Conread position:
               1-367
               

               Cow position:
               chrX:23091674-23092027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               253
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               215, 68
               

               Conread position:
               1-369
               

               Cow position:
               chrX:1503131-1503484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               259
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               52, 130
               

               Conread position:
               1-369
               

               Cow position:
               chrX:8797040-8797405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 130
               

               Conread position:
               1-369
               

               Cow position:
               chrX:9416900-9416526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 124
               

               Conread position:
               1-369
               

               Cow position:
               chrX:17541756-17542116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               73, 131
               

               Conread position:
               1-369
               

               Cow position:
               chrX:33639764-33640131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 128
               

               Conread position:
               1-369
               

               Cow position:
               chrX:41884625-41884256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               256
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               64, 134
               

               Conread position:
               1-370
               

               Cow position:
               chrX:878579-878223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 32
               

               Conread position:
               1-370
               

               Cow position:
               chrX:17888613-17888266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               1-370
               

               Cow position:
               chrX:20697815-20697454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 128
               

               Conread position:
               1-370
               

               Cow position:
               chrX:28134138-28134495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               65, 86
               

               Conread position:
               1-370
               

               Cow position:
               chrX:37836380-37836735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 127
               

               Conread position:
               1-372
               

               Cow position:
               chrX:15814890-15815247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 51
               

               Conread position:
               1-373
               

               Cow position:
               chrX:13382118-13382485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 129
               

               Conread position:
               1-373
               

               Cow position:
               chrX:14599322-14599692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 134
               

               Conread position:
               1-373
               

               Cow position:
               chrX:27516325-27516678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 122
               

               Conread position:
               1-373
               

               Cow position:
               chrX:38227297-38226950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-374
               

               Cow position:
               chrX:5900250-5900623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 214
               

               Conread position:
               1-374
               

               Cow position:
               chrX:7718647-7718993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               268
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               68, 106
               

               Conread position:
               1-376
               

               Cow position:
               chrX:619215-618845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 134
               

               Conread position:
               1-377
               

               Cow position:
               chrX:6690455-6690098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               1-377
               

               Cow position:
               chrX:43567732-43568084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               350, 51
               

               Conread position:
               1-378
               

               Cow position:
               chrX:4044058-4043704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 121
               

               Conread position:
               1-382
               

               Cow position:
               chrX:45113421-45113788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 76
               

               Conread position:
               1-388
               

               Cow position:
               chrX:33205199-33204796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 212
               

               Conread position:
               1-390
               

               Cow position:
               chrX:45845888-45846280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               260
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               71, 128
               

               Conread position:
               1-400
               

               Cow position:
               chrX:16416301-16416687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 15
               

               Conread position:
               1-404
               

               Cow position:
               chrX:7178701-7179079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 32
               

               Conread position:
               1-406
               

               Cow position:
               chrX:28866200-28865814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 91
               

               Conread position:
               1-406
               

               Cow position:
               chrX:47046727-47046323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 207
               

               Conread position:
               1-407
               

               Cow position:
               chrX:34502711-34503119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 128
               

               Conread position:
               1-407
               

               Cow position:
               chrX:45967956-45968337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               69, 105
               

               Conread position:
               1-409
               

               Cow position:
               chrX:34663051-34662653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 63
               

               Conread position:
               1-411
               

               Cow position:
               chrX:6278713-6278297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 130
               

               Conread position:
               1-412
               

               Cow position:
               chrX:5017615-5017215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 68
               

               Conread position:
               1-412
               

               Cow position:
               chrX:28013647-28013242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 70
               

               Conread position:
               1-412
               

               Cow position:
               chrX:45373499-45373088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               66, 31
               

               Conread position:
               1-414
               

               Cow position:
               chrX:27394221-27393817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 68
               

               Conread position:
               1-414
               

               Cow position:
               chrX:33855440-33855025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               292
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               71, 130
               

               Conread position:
               1-414
               

               Cow position:
               chrX:48236604-48237014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               291
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               57, 121
               

               Conread position:
               1-418
               

               Cow position:
               chrX:41673896-41674302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               294
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               45, 132
               

               Conread position:
               1-419
               

               Cow position:
               chrX:8899817-8900222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 118
               

               Conread position:
               1-419
               

               Cow position:
               chrX:28632687-28632279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               279
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               71, 54
               

               Conread position:
               1-419
               

               Cow position:
               chrX:30921977-30922375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               292
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               6, 38
               

               Conread position:
               1-420
               

               Cow position:
               chrX:13647991-13647580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 63
               

               Conread position:
               1-421
               

               Cow position:
               chrX:12309597-12309180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 109
               

               Conread position:
               1-423
               

               Cow position:
               chrX:9360676-9361091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               293
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               68, 51
               

               Conread position:
               1-423
               

               Cow position:
               chrX:17231527-17231945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 89
               

               Conread position:
               1-423
               

               Cow position:
               chrX:28878367-28877959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 66
               

               Conread position:
               1-423
               

               Cow position:
               chrX:32420011-32420418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 127
               

               Conread position:
               1-423
               

               Cow position:
               chrX:34238513-34238930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 128
               

               Conread position:
               1-423
               

               Cow position:
               chrX:35542684-35543091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 134
               

               Conread position:
               1-423
               

               Cow position:
               chrX:42587636-42587215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               57, 125
               

               Conread position:
               1-423
               

               Cow position:
               chrX:47344087-47344507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 103
               

               Conread position:
               1-426
               

               Cow position:
               chrX:21064079-21064492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 48
               

               Conread position:
               1-427
               

               Cow position:
               chrX:31294751-31294358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 24
               

               Conread position:
               1-432
               

               Cow position:
               chrX:10831704-10831265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 130
               

               Conread position:
               1-432
               

               Cow position:
               chrX:15596830-15597244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 132
               

               Conread position:
               1-432
               

               Cow position:
               chrX:38549241-38549662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 134
               

               Conread position:
               1-433
               

               Cow position:
               chrX:12249599-12250032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 127
               

               Conread position:
               1-433
               

               Cow position:
               chrX:13868486-13868921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 213
               

               Conread position:
               1-433
               

               Cow position:
               chrX:34376749-34377156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               279
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               71, 19
               

               Conread position:
               1-433
               

               Cow position:
               chrX:38852989-38853428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 132
               

               Conread position:
               1-433
               

               Cow position:
               chrX:48010387-48010822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 131
               

               Conread position:
               1-434
               

               Cow position:
               chrX:21663102-21663513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               295
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               68, 20
               

               Conread position:
               1-434
               

               Cow position:
               chrX:31949138-31948716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 80
               

               Conread position:
               1-434
               

               Cow position:
               chrX:42247391-42246963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 123
               

               Conread position:
               1-434
               

               Cow position:
               chrX:47211055-47210618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               292
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               71, 131
               

               Conread position:
               1-434
               

               Cow position:
               chrX:47588495-47588931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               62, 220
               

               Conread position:
               1-434
               

               Cow position:
               chrX:47873548-47873118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               293
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               68, 36
               

               Conread position:
               1-435
               

               Cow position:
               chrX:7351092-7351520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 32
               

               Conread position:
               1-435
               

               Cow position:
               chrX:7695552-7695982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 63
               

               Conread position:
               1-435
               

               Cow position:
               chrX:9252385-9251944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 56
               

               Conread position:
               1-435
               

               Cow position:
               chrX:9425949-9425543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 125
               

               Conread position:
               1-435
               

               Cow position:
               chrX:9651253-9650808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               299
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               63, 197
               

               Conread position:
               1-435
               

               Cow position:
               chrX:11655881-11656297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 128
               

               Conread position:
               1-435
               

               Cow position:
               chrX:12290528-12290937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               1-435
               

               Cow position:
               chrX:12980038-12979616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 134
               

               Conread position:
               1-435
               

               Cow position:
               chrX:13177673-13177265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               307
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               11, 125
               

               Conread position:
               1-435
               

               Cow position:
               chrX:14884169-14883738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               291
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               64, 128
               

               Conread position:
               1-435
               

               Cow position:
               chrX:21642686-21642262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 31
               

               Conread position:
               1-435
               

               Cow position:
               chrX:23564004-23563571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 131
               

               Conread position:
               1-435
               

               Cow position:
               chrX:25816103-25815680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 123
               

               Conread position:
               1-435
               

               Cow position:
               chrX:27432126-27431705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 135
               

               Conread position:
               1-435
               

               Cow position:
               chrX:29602038-29601610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 13
               

               Conread position:
               1-435
               

               Cow position:
               chrX:30963079-30962656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 123
               

               Conread position:
               1-435
               

               Cow position:
               chrX:31443029-31442620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 125
               

               Conread position:
               1-435
               

               Cow position:
               chrX:34411632-34412067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 114
               

               Conread position:
               1-435
               

               Cow position:
               chrX:34441658-34441234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 27
               

               Conread position:
               1-435
               

               Cow position:
               chrX:40557883-40557439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               345, 63
               

               Conread position:
               1-435
               

               Cow position:
               chrX:40826954-40826531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 48
               

               Conread position:
               1-435
               

               Cow position:
               chrX:44961540-44961974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 93
               

               Conread position:
               1-435
               

               Cow position:
               chrX:46073028-46072611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 84
               

               Conread position:
               1-436
               

               Cow position:
               chrX:27514661-27515079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 132
               

               Conread position:
               1-438
               

               Cow position:
               chrX:34543580-34544008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 42
               

               Conread position:
               1-438
               

               Cow position:
               chrX:38094733-38094304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-441
               

               Cow position:
               chrX:1616255-1615833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 136
               

               Conread position:
               1-441
               

               Cow position:
               chrX:29542426-29542003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 128
               

               Conread position:
               1-442
               

               Cow position:
               chrX:40567392-40567831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               305
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               68, 134
               

               Conread position:
               1-443
               

               Cow position:
               chrX:14973942-14973529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               306
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               40, 63
               

               Conread position:
               1-443
               

               Cow position:
               chrX:15007358-15006932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 126
               

               Conread position:
               1-443
               

               Cow position:
               chrX:45598811-45598381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 117
               

               Conread position:
               1-446
               

               Cow position:
               chrX:23514225-23513776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 25
               

               Conread position:
               1-448
               

               Cow position:
               chrX:44396807-44397243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 128
               

               Conread position:
               1-451
               

               Cow position:
               chrX:42381307-42380876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 92
               

               Conread position:
               1-452
               

               Cow position:
               chrX:17794778-17795214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 102
               

               Conread position:
               1-453
               

               Cow position:
               chrX:27446481-27446919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 134
               

               Conread position:
               1-453
               

               Cow position:
               chrX:32329953-32330408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 32
               

               Conread position:
               1-454
               

               Cow position:
               chrX:37489523-37489967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 129
               

               Conread position:
               1-455
               

               Cow position:
               chrX:6488380-6488802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 8
               

               Conread position:
               1-455
               

               Cow position:
               chrX:26492795-26493247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 128
               

               Conread position:
               1-455
               

               Cow position:
               chrX:28847086-28846654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 87
               

               Conread position:
               1-456
               

               Cow position:
               chrX:3579737-3580185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 126
               

               Conread position:
               1-456
               

               Cow position:
               chrX:4269275-4268831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 129
               

               Conread position:
               1-456
               

               Cow position:
               chrX:45501941-45502375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               310
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               68, 130
               

               Conread position:
               1-456
               

               Cow position:
               chrX:46532717-46532249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 132
               

               Conread position:
               1-457
               

               Cow position:
               chrX:20677157-20677605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 111
               

               Conread position:
               1-457
               

               Cow position:
               chrX:27509227-27508780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 127
               

               Conread position:
               1-461
               

               Cow position:
               chrX:15147394-15146953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 39
               

               Conread position:
               1-461
               

               Cow position:
               chrX:45110448-45110895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               305
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               50, 109
               

               Conread position:
               1-462
               

               Cow position:
               chrX:27174787-27175246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 126
               

               Conread position:
               1-463
               

               Cow position:
               chrX:16762565-16763016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 63
               

               Conread position:
               1-463
               

               Cow position:
               chrX:21593076-21593537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 132
               

               Conread position:
               1-463
               

               Cow position:
               chrX:35268683-35269099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 25
               

               Conread position:
               1-463
               

               Cow position:
               chrX:44192650-44192194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 55
               

               Conread position:
               1-468
               

               Cow position:
               chrX:31489305-31489774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 19
               

               Conread position:
               1-469
               

               Cow position:
               chrX:40183557-40183101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 131
               

               Conread position:
               1-475
               

               Cow position:
               chrX:40481079-40480587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 15
               

               Conread position:
               1-476
               

               Cow position:
               chrX:18695127-18694661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 94
               

               Conread position:
               1-476
               

               Cow position:
               chrX:20887852-20887388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 48
               

               Conread position:
               1-476
               

               Cow position:
               chrX:32020329-32019872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 127
               

               Conread position:
               1-480
               

               Cow position:
               chrX:34454462-34454922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 65
               

               Conread position:
               1-483
               

               Cow position:
               chrX:7721777-7722239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 129
               

               Conread position:
               1-483
               

               Cow position:
               chrX:20340098-20339624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 61
               

               Conread position:
               1-483
               

               Cow position:
               chrX:21672344-21672830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 129
               

               Conread position:
               1-483
               

               Cow position:
               chrX:46032929-46032454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 127
               

               Conread position:
               1-484
               

               Cow position:
               chrX:5638377-5637919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               334
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               52, 129
               

               Conread position:
               1-484
               

               Cow position:
               chrX:15485835-15485357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 128
               

               Conread position:
               1-484
               

               Cow position:
               chrX:31436274-31436730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 123
               

               Conread position:
               1-484
               

               Cow position:
               chrX:42492722-42492259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 126
               

               Conread position:
               1-485
               

               Cow position:
               chrX:10866075-10865599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 126
               

               Conread position:
               1-486
               

               Cow position:
               chrX:30133531-30133062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 33
               

               Conread position:
               1-486
               

               Cow position:
               chrX:38935074-38935544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 131
               

               Conread position:
               2-261
               

               Cow position:
               chrX:15139750-15139499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               201
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               71, 14
               

               Conread position:
               2-265
               

               Cow position:
               chrX:42461952-42461692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               201
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               70, 125
               

               Conread position:
               2-268
               

               Cow position:
               chrX:19188730-19188986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               64, 92
               

               Conread position:
               2-271
               

               Cow position:
               chrX:36961428-36961699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 134
               

               Conread position:
               2-322
               

               Cow position:
               chrX:29032208-29032519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               65, 89
               

               Conread position:
               2-326
               

               Cow position:
               chrX:21004474-21004797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 131
               

               Conread position:
               2-350
               

               Cow position:
               chrX:10412195-10411847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 127
               

               Conread position:
               2-352
               

               Cow position:
               chrX:11073395-11073052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 102
               

               Conread position:
               2-353
               

               Cow position:
               chrX:35288454-35288795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               54, 80
               

               Conread position:
               2-362
               

               Cow position:
               chrX:41192478-41192853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               257
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               63, 206
               

               Conread position:
               2-370
               

               Cow position:
               chrX:34401791-34402163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 124
               

               Conread position:
               2-377
               

               Cow position:
               chrX:11717989-11717619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 122
               

               Conread position:
               2-414
               

               Cow position:
               chrX:841952-842356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 124
               

               Conread position:
               2-419
               

               Cow position:
               chrX:11844449-11844037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 47
               

               Conread position:
               2-423
               

               Cow position:
               chrX:8730873-8731302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 133
               

               Conread position:
               2-434
               

               Cow position:
               chrX:16541884-16541438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 131
               

               Conread position:
               2-434
               

               Cow position:
               chrX:25035594-25035163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 134
               

               Conread position:
               2-435
               

               Cow position:
               chrX:41526730-41526315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               57, 130
               

               Conread position:
               2-451
               

               Cow position:
               chrX:31729249-31729672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 61
               

               Conread position:
               2-456
               

               Cow position:
               chrX:4633057-4632614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 137
               

               Conread position:
               2-456
               

               Cow position:
               chrX:31250183-31250631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               407, 88
               

               Conread position:
               2-456
               

               Cow position:
               chrX:33466407-33466862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 123
               

               Conread position:
               2-460
               

               Cow position:
               chrX:41238572-41238119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 165
               

               Conread position:
               2-466
               

               Cow position:
               chrX:9201340-9201790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 127
               

               Conread position:
               2-470
               

               Cow position:
               chrX:22812854-22813316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 130
               

               Conread position:
               2-478
               

               Cow position:
               chrX:22821841-22822319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 126
               

               Conread position:
               2-486
               

               Cow position:
               chrX:38963900-38964368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 88
               

               Conread position:
               2-486
               

               Cow position:
               chrX:46587611-46588092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 125
               

               Conread position:
               3-191
               

               Cow position:
               chrX:25411631-25411821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               51, 110
               

               Conread position:
               3-246
               

               Cow position:
               chrX:38439268-38439514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               193
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               12, 127
               

               Conread position:
               3-252
               

               Cow position:
               chrX:3653558-3653798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               72, 105
               

               Conread position:
               3-268
               

               Cow position:
               chrX:41167170-41166907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 127
               

               Conread position:
               3-294
               

               Cow position:
               chrX:14900927-14900652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               69, 125
               

               Conread position:
               3-314
               

               Cow position:
               chrX:47481594-47481897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               70, 125
               

               Conread position:
               3-330
               

               Cow position:
               chrX:45404039-45403708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 129
               

               Conread position:
               3-330
               

               Cow position:
               chrX:48652933-48652604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               14, 130
               

               Conread position:
               3-353
               

               Cow position:
               chrX:17662802-17662458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 126
               

               Conread position:
               3-369
               

               Cow position:
               chrX:27772165-27771812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               3-369
               

               Cow position:
               chrX:32171087-32170733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               248
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               3-370
               

               Cow position:
               chrX:6265791-6265442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-374
               

               Cow position:
               chrX:29120851-29121208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 76
               

               Conread position:
               3-414
               

               Cow position:
               chrX:4768545-4768926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               282
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               3-414
               

               Cow position:
               chrX:9635386-9634991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 122
               

               Conread position:
               3-414
               

               Cow position:
               chrX:36975744-36976150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 125
               

               Conread position:
               3-417
               

               Cow position:
               chrX:6413841-6414238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               283
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               45, 128
               

               Conread position:
               3-419
               

               Cow position:
               chrX:1055595-1055178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 122
               

               Conread position:
               3-427
               

               Cow position:
               chrX:46771176-46770750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 191
               

               Conread position:
               3-435
               

               Cow position:
               chrX:20151645-20152067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 126
               

               Conread position:
               3-435
               

               Cow position:
               chrX:44054596-44055022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 130
               

               Conread position:
               3-443
               

               Cow position:
               chrX:39938728-39938311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 126
               

               Conread position:
               3-456
               

               Cow position:
               chrX:41790650-41790187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 129
               

               Conread position:
               3-460
               

               Cow position:
               chrX:5872108-5872577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 132
               

               Conread position:
               3-460
               

               Cow position:
               chrX:41879140-41878692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 123
               

               Conread position:
               3-486
               

               Cow position:
               chrX:15545689-15546151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 91
               

               Conread position:
               5-246
               

               Cow position:
               chrX:17908487-17908255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               68, 119
               

               Conread position:
               5-255
               

               Cow position:
               chrX:47757132-47756886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               67, 123
               

               Conread position:
               5-292
               

               Cow position:
               chrX:11589792-11589509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 122
               

               Conread position:
               5-361
               

               Cow position:
               chrX:6563309-6563668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               62, 29
               

               Conread position:
               5-417
               

               Cow position:
               chrX:29545083-29544680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 124
               

               Conread position:
               5-456
               

               Cow position:
               chrX:151698-152145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 47
               

               Conread position:
               5-456
               

               Cow position:
               chrX:27442758-27442297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               318
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               67, 27
               

               Conread position:
               5-458
               

               Cow position:
               chrX:38071974-38071527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               284
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               67, 130
               

               Conread position:
               6-369
               

               Cow position:
               chrX:37781320-37780952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 196
               

               Conread position:
               6-460
               

               Cow position:
               chrX:27705386-27705832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 59
               

               Conread position:
               7-330
               

               Cow position:
               chrX:47301105-47300786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               225
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               19, 31
               

               Conread position:
               7-330
               

               Cow position:
               chrX:47303081-47302760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               60, 125
               

               Conread position:
               7-351
               

               Cow position:
               chrX:48044707-48044378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               231
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               24, 46
               

               Conread position:
               9-256
               

               Cow position:
               chrX:18999689-18999931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               64, 118
               

               Conread position:
               9-303
               

               Cow position:
               chrX:12405576-12405291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               9-418
               

               Cow position:
               chrX:161221-161605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 56
               

               Conread position:
               9-435
               

               Cow position:
               chrX:38218507-38218932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 124
               

               Conread position:
               9-456
               

               Cow position:
               chrX:34554529-34554965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               430, 120
               

               Conread position:
               10-246
               

               Cow position:
               chrX:30833044-30832819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               62, 114
               

               Conread position:
               10-248
               

               Cow position:
               chrX:37048778-37048546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               62, 120
               

               Conread position:
               10-256
               

               Cow position:
               chrX:4091449-4091683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               71, 115
               

               Conread position:
               10-256
               

               Cow position:
               chrX:28836099-28835859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               62, 10
               

               Conread position:
               10-309
               

               Cow position:
               chrX:24259780-24259483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               57, 119
               

               Conread position:
               10-349
               

               Cow position:
               chrX:917570-917232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               59, 79
               

               Conread position:
               10-353
               

               Cow position:
               chrX:10959599-10959255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               39, 127
               

               Conread position:
               10-373
               

               Cow position:
               chrX:17725776-17726136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 121
               

               Conread position:
               10-406
               

               Cow position:
               chrX:4515469-4515878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 41
               

               Conread position:
               10-423
               

               Cow position:
               chrX:40035643-40035232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 122
               

               Conread position:
               10-433
               

               Cow position:
               chrX:36283147-36283557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 124
               

               Conread position:
               10-435
               

               Cow position:
               chrX:34565094-34565504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 52
               

               Conread position:
               10-439
               

               Cow position:
               chrX:43780051-43779643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 61
               

               Conread position:
               10-443
               

               Cow position:
               chrX:1499471-1499881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               10-454
               

               Cow position:
               chrX:1176181-1175752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 118
               

               Conread position:
               11-390
               

               Cow position:
               chrX:40809489-40809871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 106
               

               Conread position:
               11-435
               

               Cow position:
               chrX:33000706-33001117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 92
               

               Conread position:
               11-455
               

               Cow position:
               chrX:36355925-36356343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 37
               

               Conread position:
               13-434
               

               Cow position:
               chrX:7863768-7863362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               286
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               14, 120
               

               Conread position:
               13-470
               

               Cow position:
               chrX:47484467-47484013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 119
               

               Conread position:
               16-368
               

               Cow position:
               chrX:39126144-39126482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               63, 50
               

               Conread position:
               16-435
               

               Cow position:
               chrX:8869601-8869185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               37, 120
               

               Conread position:
               17-373
               

               Cow position:
               chrX:43730406-43730064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 70
               

               Conread position:
               18-373
               

               Cow position:
               chrX:23785463-23785808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 117
               

               Conread position:
               18-377
               

               Cow position:
               chrX:44657155-44656793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               246
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               54, 100
               

               Conread position:
               18-387
               

               Cow position:
               chrX:3489075-3488719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 59
               

               Conread position:
               18-451
               

               Cow position:
               chrX:11633488-11633917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 111
               

               Conread position:
               27-438
               

               Cow position:
               chrX:6407367-6407766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 107
               

               Conread position:
               28-370
               

               Cow position:
               chrX:36067839-36068176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               44, 80
               

               Conread position:
               29-297
               

               Cow position:
               chrX:13785537-13785279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               201
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               182, 37
               

               Conread position:
               30-412
               

               Cow position:
               chrX:4279293-4278921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               270
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               37, 101
               

               Conread position:
               31-423
               

               Cow position:
               chrX:47166062-47165676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               271
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               38, 19
               

               Conread position:
               32-378
               

               Cow position:
               chrX:42235710-42235360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               31, 99
               

               Conread position:
               32-412
               

               Cow position:
               chrX:47186497-47186130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               267
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               37, 104
               

               Conread position:
               32-435
               

               Cow position:
               chrX:36060975-36061378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 100
               

               Conread position:
               32-451
               

               Cow position:
               chrX:35383196-35382808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               289
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               37, 91
               

               Conread position:
               33-414
               

               Cow position:
               chrX:169701-169343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 39
               

               Conread position:
               33-435
               

               Cow position:
               chrX:18485619-18486022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               281
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               39, 97
               

               Conread position:
               34-456
               

               Cow position:
               chrX:15231832-15231418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               280
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               37, 65
               

               Conread position:
               35-300
               

               Cow position:
               chrX:22465782-22466043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               37, 58
               

               Conread position:
               35-433
               

               Cow position:
               chrX:45448715-45449127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               25, 154
               

               Conread position:
               35-456
               

               Cow position:
               chrX:22387421-22387003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 93
               

               Conread position:
               35-486
               

               Cow position:
               chrX:35885903-35885460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 93
               

               Conread position:
               36-256
               

               Cow position:
               chrX:37750426-37750211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               45, 33
               

               Conread position:
               36-407
               

               Cow position:
               chrX:31252245-31252599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 90
               

               Conread position:
               37-433
               

               Cow position:
               chrX:32820857-32821257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 92
               

               Conread position:
               37-435
               

               Cow position:
               chrX:34792482-34792104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               281
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               35, 61
               

               Conread position:
               37-456
               

               Cow position:
               chrX:37955666-37956089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 85
               

               Conread position:
               37-457
               

               Cow position:
               chrX:4398954-4399359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 92
               

               Conread position:
               38-414
               

               Cow position:
               chrX:14955938-14955570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               34, 18
               

               Conread position:
               40-249
               

               Cow position:
               chrX:14003813-14003610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               29, 95
               

               Conread position:
               40-370
               

               Cow position:
               chrX:6260323-6259993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               48, 86
               

               Conread position:
               43-334
               

               Cow position:
               chrX:30263087-30263378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               30, 84
               

               Conread position:
               45-419
               

               Cow position:
               chrX:41068564-41068923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               266
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               21, 49
               

               Conread position:
               46-435
               

               Cow position:
               chrX:24365984-24365603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 27
               

               Conread position:
               46-435
               

               Cow position:
               chrX:45875239-45875609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               48-352
               

               Cow position:
               chrX:36515052-36514753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               28, 13
               

               Conread position:
               50-330
               

               Cow position:
               chrX:48571151-48570871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               32, 21
               

               Conread position:
               54-237
               

               Cow position:
               chrX:35969237-35969062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               18, 31
               

               Conread position:
               54-442
               

               Cow position:
               chrX:5680085-5679703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               16, 33
               

               Conread position:
               58-278
               

               Cow position:
               chrX:32215051-32215263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               59-443
               

               Cow position:
               chrX:46547021-46546646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               259
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               220, 14
               

               Conread position:
               62-347
               

               Cow position:
               chrX:19273865-19273573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               32, 66
               

               Conread position:
               62-435
               

               Cow position:
               chrX:45976778-45977143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               254
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               143, 80
               

               Conread position:
               64-369
               

               Cow position:
               chrX:39415510-39415212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               15, 62
               

               Conread position:
               64-373
               

               Cow position:
               chrX:29680400-29680100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 57
               

               Conread position:
               64-456
               

               Cow position:
               chrX:41870933-41871295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               144, 59
               

               Conread position:
               65-313
               

               Cow position:
               chrX:21566263-21566507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               144, 67
               

               Conread position:
               65-313
               

               Cow position:
               chrX:27685108-27685349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               230, 59
               

               Conread position:
               65-367
               

               Cow position:
               chrX:11614560-11614846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               219
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               65-370
               

               Cow position:
               chrX:46433347-46433647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 63
               

               Conread position:
               65-396
               

               Cow position:
               chrX:24288068-24287753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               240
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               26, 60
               

               Conread position:
               65-412
               

               Cow position:
               chrX:48646739-48646411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               65-432
               

               Cow position:
               chrX:27227984-27228345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 62
               

               Conread position:
               65-434
               

               Cow position:
               chrX:22921177-22921539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 59
               

               Conread position:
               65-456
               

               Cow position:
               chrX:25207982-25207622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               65-456
               

               Cow position:
               chrX:29723602-29723989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 57
               

               Conread position:
               65-456
               

               Cow position:
               chrX:43049920-43050310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               67-250
               

               Cow position:
               chrX:31987004-31986826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               62, 32
               

               Conread position:
               67-370
               

               Cow position:
               chrX:7710680-7710381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 60
               

               Conread position:
               67-434
               

               Cow position:
               chrX:36393484-36393123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 57
               

               Conread position:
               67-460
               

               Cow position:
               chrX:34315393-34315769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               149, 19
               

               Conread position:
               68-256
               

               Cow position:
               chrX:36314431-36314251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               171, 57
               

               Conread position:
               68-256
               

               Cow position:
               chrX:42759846-42760028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 90
               

               Conread position:
               68-315
               

               Cow position:
               chrX:23254346-23254103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               55, 72
               

               Conread position:
               68-390
               

               Cow position:
               chrX:42873256-42873563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               240, 30
               

               Conread position:
               69-373
               

               Cow position:
               chrX:616397-616098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               135, 52
               

               Conread position:
               69-412
               

               Cow position:
               chrX:27301734-27302073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               244
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               10, 55
               

               Conread position:
               69-413
               

               Cow position:
               chrX:5919361-5919689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               242, 56
               

               Conread position:
               69-418
               

               Cow position:
               chrX:18204598-18204261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 55
               

               Conread position:
               69-435
               

               Cow position:
               chrX:8917261-8917614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               251
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               69-435
               

               Cow position:
               chrX:21986427-21986082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               260, 52
               

               Conread position:
               69-435
               

               Cow position:
               chrX:34313898-34314240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               255
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               69-435
               

               Cow position:
               chrX:47280067-47279717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               253
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               189, 53
               

               Conread position:
               69-454
               

               Cow position:
               chrX:35822207-35822569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               255
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               69-456
               

               Cow position:
               chrX:41027022-41027400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 51
               

               Conread position:
               71-256
               

               Cow position:
               chrX:36723224-36723046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               71-367
               

               Cow position:
               chrX:45098988-45099282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               23, 53
               

               Conread position:
               71-431
               

               Cow position:
               chrX:5118635-5118283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 50
               

               Conread position:
               71-441
               

               Cow position:
               chrX:30840423-30840765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               136, 42
               

               Conread position:
               72-434
               

               Cow position:
               chrX:48262474-48262823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               72-442
               

               Cow position:
               chrX:40685463-40685103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 50
               

               Conread position:
               73-373
               

               Cow position:
               chrX:9365806-9365516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               74-433
               

               Cow position:
               chrX:43115021-43115366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               29, 48
               

               Conread position:
               75-365
               

               Cow position:
               chrX:38728608-38728886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 47
               

               Conread position:
               76-330
               

               Cow position:
               chrX:45005502-45005741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               77-296
               

               Cow position:
               chrX:16055084-16055290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               133, 46
               

               Conread position:
               77-421
               

               Cow position:
               chrX:34222586-34222918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 14
               

               Conread position:
               78-294
               

               Cow position:
               chrX:19003174-19003374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               79-423
               

               Cow position:
               chrX:47609681-47609998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               342, 45
               

               Conread position:
               80-340
               

               Cow position:
               chrX:19162471-19162214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               21, 13
               

               Conread position:
               80-427
               

               Cow position:
               chrX:27946183-27945842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               81-434
               

               Cow position:
               chrX:18111267-18111597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               247
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               81-435
               

               Cow position:
               chrX:40175045-40175395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               254, 11
               

               Conread position:
               82-434
               

               Cow position:
               chrX:40320283-40320625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               84-455
               

               Cow position:
               chrX:4403194-4403557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 38
               

               Conread position:
               85-447
               

               Cow position:
               chrX:4512115-4512476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               123, 42
               

               Conread position:
               86-364
               

               Cow position:
               chrX:5679684-5679421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               87-434
               

               Cow position:
               chrX:44744934-44744604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               87-435
               

               Cow position:
               chrX:4296945-4296605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 113
               

               Conread position:
               87-443
               

               Cow position:
               chrX:26881685-26881335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 40
               

               Conread position:
               88-456
               

               Cow position:
               chrX:24331662-24332017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               89-433
               

               Cow position:
               chrX:46022673-46022992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               91-435
               

               Cow position:
               chrX:38654543-38654213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               277, 36
               

               Conread position:
               91-443
               

               Cow position:
               chrX:29229896-29230234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               6, 31
               

               Conread position:
               92-315
               

               Cow position:
               chrX:44873673-44873459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               132, 38
               

               Conread position:
               93-374
               

               Cow position:
               chrX:29194123-29194391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               222, 28
               

               Conread position:
               93-426
               

               Cow position:
               chrX:4992127-4991814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               13, 32
               

               Conread position:
               93-435
               

               Cow position:
               chrX:17949601-17949273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 32
               

               Conread position:
               93-481
               

               Cow position:
               chrX:33654958-33654580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 32
               

               Conread position:
               94-378
               

               Cow position:
               chrX:29549662-29549387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               118, 14
               

               Conread position:
               96-296
               

               Cow position:
               chrX:47657276-47657469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               100, 27
               

               Conread position:
               99-375
               

               Cow position:
               chrX:4746358-4746082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               30, 102
               

               Conread position:
               101-377
               

               Cow position:
               chrX:37129161-37129431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 9
               

               Conread position:
               102-435
               

               Cow position:
               chrX:16348672-16348335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               106, 21
               

               Conread position:
               103-454
               

               Cow position:
               chrX:21327802-21328151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 22
               

               Conread position:
               103-486
               

               Cow position:
               chrX:25283123-25282747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               26, 107
               

               Conread position:
               105-378
               

               Cow position:
               chrX:45884079-45883806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               109-414
               

               Cow position:
               chrX:34837156-34836873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               113-434
               

               Cow position:
               chrX:10859396-10859095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               141, 61
               

               Conread position:
               114-353
               

               Cow position:
               chrX:46429919-46429679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               15, 40
               

               Conread position:
               115-433
               

               Cow position:
               chrX:42855359-42855680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 59
               

               Conread position:
               119-471
               

               Cow position:
               chrX:20168466-20168808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 89
               

               Conread position:
               119-486
               

               Cow position:
               chrX:13121833-13122215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 246
               

               Conread position:
               120-434
               

               Cow position:
               chrX:29050156-29050460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               99, 153
               

               Conread position:
               120-436
               

               Cow position:
               chrX:10516165-10516474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 37
               

               Conread position:
               120-456
               

               Cow position:
               chrX:27261097-27261430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 36
               

               Conread position:
               121-463
               

               Cow position:
               chrX:7648491-7648166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               246
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               30, 18
               

               Conread position:
               122-469
               

               Cow position:
               chrX:27459768-27460119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               120, 25
               

               Conread position:
               127-373
               

               Cow position:
               chrX:41271080-41270826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               53, 10
               

               Conread position:
               127-423
               

               Cow position:
               chrX:43150340-43150638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               221
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               93, 38
               

               Conread position:
               127-449
               

               Cow position:
               chrX:39219995-39220321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               128-397
               

               Cow position:
               chrX:16575040-16575294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               128-414
               

               Cow position:
               chrX:33800240-33800519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               128-434
               

               Cow position:
               chrX:48071078-48071380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               128-454
               

               Cow position:
               chrX:40680528-40680853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 79
               

               Conread position:
               128-485
               

               Cow position:
               chrX:35590840-35590484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               92, 69
               

               Conread position:
               129-410
               

               Cow position:
               chrX:40283044-40283317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 84
               

               Conread position:
               129-435
               

               Cow position:
               chrX:12095855-12095552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 66
               

               Conread position:
               129-457
               

               Cow position:
               chrX:6559527-6559214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               232
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               311, 69
               

               Conread position:
               130-373
               

               Cow position:
               chrX:11318048-11317808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               70, 80
               

               Conread position:
               130-456
               

               Cow position:
               chrX:1466080-1466403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               48, 37
               

               Conread position:
               131-369
               

               Cow position:
               chrX:23562554-23562788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               7, 48
               

               Conread position:
               131-461
               

               Cow position:
               chrX:13923792-13924107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               317, 53
               

               Conread position:
               132-374
               

               Cow position:
               chrX:22915115-22914881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               132-407
               

               Cow position:
               chrX:23113198-23113474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               6, 30
               

               Conread position:
               132-456
               

               Cow position:
               chrX:22283752-22284079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               8, 54
               

               Conread position:
               133-460
               

               Cow position:
               chrX:5134394-5134717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               25, 78
               

               Conread position:
               135-419
               

               Cow position:
               chrX:19965478-19965192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               66, 230
               

               Conread position:
               137-362
               

               Cow position:
               chrX:4153109-4152882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               74, 194
               

               Conread position:
               139-292
               

               Cow position:
               chrX:13136304-13136153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               139-432
               

               Cow position:
               chrX:38208615-38208338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               139-435
               

               Cow position:
               chrX:25036915-25037211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               225, 67
               

               Conread position:
               139-435
               

               Cow position:
               chrX:36866099-36866392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 59
               

               Conread position:
               141-294
               

               Cow position:
               chrX:21004954-21004800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               115, 150
               

               Conread position:
               141-435
               

               Cow position:
               chrX:48003777-48004065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               177, 57
               

               Conread position:
               142-267
               

               Cow position:
               chrX:17301378-17301252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               72, 64
               

               Conread position:
               142-367
               

               Cow position:
               chrX:19097291-19097066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               115, 57
               

               Conread position:
               146-414
               

               Cow position:
               chrX:2675022-2674759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               134, 47
               

               Conread position:
               146-414
               

               Cow position:
               chrX:5063188-5063436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               148-357
               

               Cow position:
               chrX:6463548-6463742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               148-435
               

               Cow position:
               chrX:296332-296611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               61, 118
               

               Conread position:
               148-451
               

               Cow position:
               chrX:15820534-15820841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               129, 61
               

               Conread position:
               148-470
               

               Cow position:
               chrX:13146918-13147236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               281, 49
               

               Conread position:
               149-432
               

               Cow position:
               chrX:44703134-44702849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               211
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               139, 65
               

               Conread position:
               149-435
               

               Cow position:
               chrX:4109128-4109404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               149-455
               

               Cow position:
               chrX:23561799-23562113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               139, 56
               

               Conread position:
               151-430
               

               Cow position:
               chrX:27511367-27511636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               34, 53
               

               Conread position:
               153-418
               

               Cow position:
               chrX:30271-30536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               99, 61
               

               Conread position:
               153-432
               

               Cow position:
               chrX:1360028-1360298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               154-372
               

               Cow position:
               chrX:31627038-31626818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               50, 122
               

               Conread position:
               155-377
               

               Cow position:
               chrX:32978133-32977924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               168, 50
               

               Conread position:
               156-394
               

               Cow position:
               chrX:6541791-6541547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               88, 49
               

               Conread position:
               156-435
               

               Cow position:
               chrX:44339379-44339102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 119
               

               Conread position:
               159-408
               

               Cow position:
               chrX:18964876-18964633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               198, 25
               

               Conread position:
               159-458
               

               Cow position:
               chrX:35985766-35986060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               268, 96
               

               Conread position:
               161-435
               

               Cow position:
               chrX:11825690-11825424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               162-357
               

               Cow position:
               chrX:19943286-19943092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               44, 129
               

               Conread position:
               162-433
               

               Cow position:
               chrX:22393035-22392771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               160, 155
               

               Conread position:
               164-435
               

               Cow position:
               chrX:36367989-36367715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               94, 55
               

               Conread position:
               169-442
               

               Cow position:
               chrX:27075091-27074825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               170-435
               

               Cow position:
               chrX:4645953-4645695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               171-435
               

               Cow position:
               chrX:17956655-17956908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               172-451
               

               Cow position:
               chrX:36392227-36391952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               95, 23
               

               Conread position:
               174-354
               

               Cow position:
               chrX:10305385-10305210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               174-412
               

               Cow position:
               chrX:23188814-23188593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               174-461
               

               Cow position:
               chrX:40532081-40531783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               183, 40
               

               Conread position:
               175-377
               

               Cow position:
               chrX:29553249-29553448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               175-435
               

               Cow position:
               chrX:28940210-28940463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               127, 12
               

               Conread position:
               175-435
               

               Cow position:
               chrX:42893881-42894141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               31, 187
               

               Conread position:
               175-455
               

               Cow position:
               chrX:40108552-40108273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               105, 14
               

               Conread position:
               175-457
               

               Cow position:
               chrX:48558711-48558987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               179-423
               

               Cow position:
               chrX:19660495-19660247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               91, 37
               

               Conread position:
               179-455
               

               Cow position:
               chrX:11326132-11325867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               28, 36
               

               Conread position:
               179-455
               

               Cow position:
               chrX:35431276-35430999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               77, 27
               

               Conread position:
               179-456
               

               Cow position:
               chrX:19394520-19394795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               179-456
               

               Cow position:
               chrX:41941594-41941862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               179-476
               

               Cow position:
               chrX:24457585-24457288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               83, 19
               

               Conread position:
               180-378
               

               Cow position:
               chrX:23498709-23498515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               180-409
               

               Cow position:
               chrX:45064823-45064599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-410
               

               Cow position:
               chrX:32605108-32604874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               38, 155
               

               Conread position:
               180-412
               

               Cow position:
               chrX:48473876-48474105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-414
               

               Cow position:
               chrX:44660619-44660390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               152, 13
               

               Conread position:
               180-416
               

               Cow position:
               chrX:47300646-47300413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               180-416
               

               Cow position:
               chrX:47302764-47302532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-419
               

               Cow position:
               chrX:44736887-44736652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-419
               

               Cow position:
               chrX:45124371-45124606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-427
               

               Cow position:
               chrX:44238796-44238551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-432
               

               Cow position:
               chrX:12219121-12219362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               180-432
               

               Cow position:
               chrX:44796351-44796600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               129, 18
               

               Conread position:
               180-433
               

               Cow position:
               chrX:44090891-44091140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-433
               

               Cow position:
               chrX:46722621-46722372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               212, 18
               

               Conread position:
               180-433
               

               Cow position:
               chrX:48141789-48142037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-433
               

               Cow position:
               chrX:48397859-48397609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               218, 18
               

               Conread position:
               180-434
               

               Cow position:
               chrX:44202078-44201827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               180-434
               

               Cow position:
               chrX:44859894-44859644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               180-434
               

               Cow position:
               chrX:45005406-45005157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-434
               

               Cow position:
               chrX:45254614-45254364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-434
               

               Cow position:
               chrX:45391745-45391495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               180-434
               

               Cow position:
               chrX:45447224-45447475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               174, 18
               

               Conread position:
               180-434
               

               Cow position:
               chrX:47013434-47013183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               210, 21
               

               Conread position:
               180-434
               

               Cow position:
               chrX:47358276-47358532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               66, 17
               

               Conread position:
               180-434
               

               Cow position:
               chrX:48194922-48194673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-434
               

               Cow position:
               chrX:48532283-48532532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               138, 18
               

               Conread position:
               180-435
               

               Cow position:
               chrX:44954461-44954713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               180-435
               

               Cow position:
               chrX:48198678-48198429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-435
               

               Cow position:
               chrX:48574615-48574866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-460
               

               Cow position:
               chrX:44591093-44590819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               180-481
               

               Cow position:
               chrX:46793777-46793488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               180-483
               

               Cow position:
               chrX:44837233-44837533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               239, 18
               

               Conread position:
               181-433
               

               Cow position:
               chrX:27380324-27380577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               37, 15
               

               Conread position:
               181-458
               

               Cow position:
               chrX:34540649-34540925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               97, 91
               

               Conread position:
               181-469
               

               Cow position:
               chrX:1397596-1397877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               158, 17
               

               Conread position:
               181-470
               

               Cow position:
               chrX:43152187-43151901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               277, 27
               

               Conread position:
               183-434
               

               Cow position:
               chrX:48570872-48570625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               184-373
               

               Cow position:
               chrX:20743575-20743765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               28, 22
               

               Conread position:
               184-400
               

               Cow position:
               chrX:48655784-48655570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               206, 14
               

               Conread position:
               184-409
               

               Cow position:
               chrX:32318276-32318494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               33, 23
               

               Conread position:
               184-423
               

               Cow position:
               chrX:45543294-45543542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               35, 14
               

               Conread position:
               184-433
               

               Cow position:
               chrX:6599811-6599557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               24, 31
               

               Conread position:
               185-434
               

               Cow position:
               chrX:45403572-45403327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               187-373
               

               Cow position:
               chrX:5135549-5135360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               119, 152
               

               Conread position:
               187-435
               

               Cow position:
               chrX:19469530-19469296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               187-443
               

               Cow position:
               chrX:1088167-1087921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               190-355
               

               Cow position:
               chrX:17966322-17966483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               190-367
               

               Cow position:
               chrX:25411886-25412059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               191-452
               

               Cow position:
               chrX:42836164-42836417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               192-419
               

               Cow position:
               chrX:32574293-32574519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               8, 172
               

               Conread position:
               193-372
               

               Cow position:
               chrX:34278461-34278284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               151, 13
               

               Conread position:
               194-436
               

               Cow position:
               chrX:42282559-42282797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               86, 30
               

               Conread position:
               194-484
               

               Cow position:
               chrX:42450033-42449745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               195-438
               

               Cow position:
               chrX:47255430-47255671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               175, 0
               

               Conread position:
               195-448
               

               Cow position:
               chrX:35275969-35276218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               85, 19
               

               Conread position:
               196-438
               

               Cow position:
               chrX:42432528-42432292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               74, 11
               

               Conread position:
               196-479
               

               Cow position:
               chrX:18873285-18872999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               71, 10
               

               Conread position:
               197-370
               

               Cow position:
               chrX:31373527-31373693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               82, 22
               

               Conread position:
               198-433
               

               Cow position:
               chrX:9272483-9272240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               100, 184
               

               Conread position:
               199-414
               

               Cow position:
               chrX:20678152-20677949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               201-412
               

               Cow position:
               chrX:16409590-16409813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               143, 132
               

               Conread position:
               201-457
               

               Cow position:
               chrX:29451552-29451303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               129, 13
               

               Conread position:
               202-433
               

               Cow position:
               chrX:4559728-4559951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               202-435
               

               Cow position:
               chrX:2935945-2936172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               13, 148
               

               Conread position:
               202-456
               

               Cow position:
               chrX:17292943-17293195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               19, 138
               

               Conread position:
               205-419
               

               Cow position:
               chrX:5512624-5512413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               205-433
               

               Cow position:
               chrX:29317863-29318086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               206-433
               

               Cow position:
               chrX:29733599-29733367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               151, 210
               

               Conread position:
               207-412
               

               Cow position:
               chrX:11859543-11859340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               207-412
               

               Cow position:
               chrX:26205453-26205258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               207-435
               

               Cow position:
               chrX:38587849-38587626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               138, 120
               

               Conread position:
               207-456
               

               Cow position:
               chrX:22864280-22864023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               40, 180
               

               Conread position:
               208-385
               

               Cow position:
               chrX:42244483-42244305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               9, 163
               

               Conread position:
               208-482
               

               Cow position:
               chrX:1552964-1553233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               209-423
               

               Cow position:
               chrX:6007671-6007883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               212, 138
               

               Conread position:
               209-433
               

               Cow position:
               chrX:3806678-3806895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               209-434
               

               Cow position:
               chrX:25846077-25845855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               70, 63
               

               Conread position:
               209-454
               

               Cow position:
               chrX:47345324-47345569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               128, 7
               

               Conread position:
               209-456
               

               Cow position:
               chrX:30672400-30672145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               70, 63
               

               Conread position:
               209-470
               

               Cow position:
               chrX:35658795-35659044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               11, 21
               

               Conread position:
               209-471
               

               Cow position:
               chrX:24170733-24170469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 100
               

               Conread position:
               209-485
               

               Cow position:
               chrX:8493062-8493337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               226, 152
               

               Conread position:
               210-347
               

               Cow position:
               chrX:16830221-16830354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               210-433
               

               Cow position:
               chrX:23335975-23335758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               210-433
               

               Cow position:
               chrX:29478721-29478939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               72, 62
               

               Conread position:
               210-435
               

               Cow position:
               chrX:40574945-40574724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               70, 58
               

               Conread position:
               210-445
               

               Cow position:
               chrX:11653760-11653996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               10, 166
               

               Conread position:
               210-454
               

               Cow position:
               chrX:21665244-21665004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               147, 191
               

               Conread position:
               210-462
               

               Cow position:
               chrX:39290356-39290605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               200, 125
               

               Conread position:
               210-474
               

               Cow position:
               chrX:27145601-27145861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               226, 150
               

               Conread position:
               210-479
               

               Cow position:
               chrX:26979792-26979534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               136, 88
               

               Conread position:
               211-365
               

               Cow position:
               chrX:31829463-31829309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               211-445
               

               Cow position:
               chrX:32910102-32910326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               211-482
               

               Cow position:
               chrX:40336909-40337177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               214-412
               

               Cow position:
               chrX:24633685-24633890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               48, 156
               

               Conread position:
               214-433
               

               Cow position:
               chrX:34420735-34420953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               214-454
               

               Cow position:
               chrX:27668957-27668723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               220, 160
               

               Conread position:
               214-456
               

               Cow position:
               chrX:4328182-4327941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               205, 122
               

               Conread position:
               215-434
               

               Cow position:
               chrX:45139930-45139713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               215-435
               

               Cow position:
               chrX:36109614-36109395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               64, 57
               

               Conread position:
               215-435
               

               Cow position:
               chrX:43008611-43008829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               215-435
               

               Cow position:
               chrX:44040183-44040396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               216-409
               

               Cow position:
               chrX:17704392-17704581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               216-410
               

               Cow position:
               chrX:39180230-39180039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               63, 56
               

               Conread position:
               216-434
               

               Cow position:
               chrX:25049279-25049063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               216-435
               

               Cow position:
               chrX:17524381-17524164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               216-435
               

               Cow position:
               chrX:38967891-38968114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               29, 76
               

               Conread position:
               216-470
               

               Cow position:
               chrX:26843266-26843012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               216-473
               

               Cow position:
               chrX:24336074-24335820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               243, 152
               

               Conread position:
               217-438
               

               Cow position:
               chrX:37856356-37856583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               218-409
               

               Cow position:
               chrX:32186773-32186963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               164, 143
               

               Conread position:
               218-445
               

               Cow position:
               chrX:1122538-1122318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               218-449
               

               Cow position:
               chrX:19761759-19761983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               61, 54
               

               Conread position:
               220-432
               

               Cow position:
               chrX:28836901-28837100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               222-407
               

               Cow position:
               chrX:23098195-23098018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               223-435
               

               Cow position:
               chrX:16324004-16323796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               223-435
               

               Cow position:
               chrX:19018821-19018609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               153, 136
               

               Conread position:
               223-465
               

               Cow position:
               chrX:35285183-35285425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               56, 49
               

               Conread position:
               223-475
               

               Cow position:
               chrX:27447710-27447979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               224-435
               

               Cow position:
               chrX:35392283-35392086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               224-456
               

               Cow position:
               chrX:19356480-19356704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               55, 66
               

               Conread position:
               226-434
               

               Cow position:
               chrX:3494809-3494603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               226-456
               

               Cow position:
               chrX:20957251-20957479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               207, 134
               

               Conread position:
               227-369
               

               Cow position:
               chrX:47342130-47342271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               52, 41
               

               Conread position:
               227-412
               

               Cow position:
               chrX:1719129-1719304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               227-427
               

               Cow position:
               chrX:35620718-35620917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               194, 134
               

               Conread position:
               227-435
               

               Cow position:
               chrX:38301823-38302033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               227-463
               

               Cow position:
               chrX:8759638-8759867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               38, 21
               

               Conread position:
               228-365
               

               Cow position:
               chrX:24343557-24343419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               228-427
               

               Cow position:
               chrX:24104854-24105051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               229-455
               

               Cow position:
               chrX:8642062-8642284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               229-458
               

               Cow position:
               chrX:31479987-31480205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               114, 60
               

               Conread position:
               229-470
               

               Cow position:
               chrX:20583682-20583915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               230, 145
               

               Conread position:
               231-419
               

               Cow position:
               chrX:19717539-19717717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               232-423
               

               Cow position:
               chrX:20345472-20345659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               189, 24
               

               Conread position:
               232-432
               

               Cow position:
               chrX:41810149-41809959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               47, 40
               

               Conread position:
               232-459
               

               Cow position:
               chrX:32877356-32877137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               233-435
               

               Cow position:
               chrX:28067870-28068070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               188, 126
               

               Conread position:
               233-435
               

               Cow position:
               chrX:41454934-41454734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               113, 106
               

               Conread position:
               233-464
               

               Cow position:
               chrX:24425982-24425754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               235-433
               

               Cow position:
               chrX:34398762-34398566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               235-435
               

               Cow position:
               chrX:42050247-42050050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               237-435
               

               Cow position:
               chrX:51872-51683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               237-435
               

               Cow position:
               chrX:37062561-37062348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               42, 35
               

               Conread position:
               237-455
               

               Cow position:
               chrX:16763903-16763691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 126
               

               Conread position:
               237-458
               

               Cow position:
               chrX:32866899-32867112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               238-435
               

               Cow position:
               chrX:6634373-6634564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               13, 9
               

               Conread position:
               241-455
               

               Cow position:
               chrX:7911044-7910836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               74, 80
               

               Conread position:
               241-457
               

               Cow position:
               chrX:2314591-2314377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               241-469
               

               Cow position:
               chrX:23359083-23358861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               194, 31
               

               Conread position:
               241-484
               

               Cow position:
               chrX:11781281-11781521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               194, 80
               

               Conread position:
               242-433
               

               Cow position:
               chrX:32191144-32190955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               242-443
               

               Cow position:
               chrX:46909844-46910035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               242-477
               

               Cow position:
               chrX:44995527-44995760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               51, 134
               

               Conread position:
               243-395
               

               Cow position:
               chrX:23185516-23185370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               5, 30
               

               Conread position:
               243-414
               

               Cow position:
               chrX:37749953-37749791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               243-433
               

               Cow position:
               chrX:25930667-25930857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               27, 38
               

               Conread position:
               243-435
               

               Cow position:
               chrX:40648926-40649121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               37, 20
               

               Conread position:
               243-435
               

               Cow position:
               chrX:47601293-47601104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               33, 11
               

               Conread position:
               243-455
               

               Cow position:
               chrX:4091954-4092161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               167
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               243-480
               

               Cow position:
               chrX:4612852-4612611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               36, 29
               

               Conread position:
               244-435
               

               Cow position:
               chrX:18439027-18439216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               245-432
               

               Cow position:
               chrX:48822310-48822126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               34, 27
               

               Conread position:
               245-471
               

               Cow position:
               chrX:14925308-14925529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               192, 25
               

               Conread position:
               246-423
               

               Cow position:
               chrX:28850756-28850925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               21, 8
               

               Conread position:
               247-463
               

               Cow position:
               chrX:10278898-10279121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               23, 178
               

               Conread position:
               248-414
               

               Cow position:
               chrX:48118697-48118538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               248-434
               

               Cow position:
               chrX:27416129-27416313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               116, 6
               

               Conread position:
               248-435
               

               Cow position:
               chrX:1960390-1960206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               248-435
               

               Cow position:
               chrX:27270410-27270588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               31, 24
               

               Conread position:
               248-435
               

               Cow position:
               chrX:35681603-35681786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               248-460
               

               Cow position:
               chrX:17498357-17498568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               187, 123
               

               Conread position:
               248-463
               

               Cow position:
               chrX:11454221-11454421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               249-434
               

               Cow position:
               chrX:3605916-3606099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               249-434
               

               Cow position:
               chrX:13321970-13322152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               249-434
               

               Cow position:
               chrX:33020473-33020656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               249-456
               

               Cow position:
               chrX:30958762-30958970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               42, 130
               

               Conread position:
               249-458
               

               Cow position:
               chrX:876806-876605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               250-432
               

               Cow position:
               chrX:31986537-31986356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               46, 101
               

               Conread position:
               250-433
               

               Cow position:
               chrX:37867290-37867471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               250-433
               

               Cow position:
               chrX:42760289-42760470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               250-435
               

               Cow position:
               chrX:16556180-16556004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               250-435
               

               Cow position:
               chrX:42875250-42875428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               251-428
               

               Cow position:
               chrX:19795466-19795297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               43, 68
               

               Conread position:
               251-431
               

               Cow position:
               chrX:13144484-13144662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               251-435
               

               Cow position:
               chrX:17298297-17298479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               251-435
               

               Cow position:
               chrX:44123293-44123468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               251-456
               

               Cow position:
               chrX:41435511-41435302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               251-466
               

               Cow position:
               chrX:37752068-37751861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               252-435
               

               Cow position:
               chrX:46533266-46533085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               252-486
               

               Cow position:
               chrX:48495036-48495271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               195, 25
               

               Conread position:
               253-435
               

               Cow position:
               chrX:27415540-27415369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               253-435
               

               Cow position:
               chrX:35409792-35409971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               253-435
               

               Cow position:
               chrX:41858842-41858665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               84, 108
               

               Conread position:
               253-456
               

               Cow position:
               chrX:14951313-14951112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               92, 86
               

               Conread position:
               253-456
               

               Cow position:
               chrX:19203306-19203105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               253-469
               

               Cow position:
               chrX:45759711-45759918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               145, 114
               

               Conread position:
               254-435
               

               Cow position:
               chrX:32215271-32215448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               254-440
               

               Cow position:
               chrX:11517939-11517754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               255-438
               

               Cow position:
               chrX:46068717-46068542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               255-455
               

               Cow position:
               chrX:1938058-1938252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               256-443
               

               Cow position:
               chrX:34270604-34270788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               256-481
               

               Cow position:
               chrX:1121324-1121104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               257-433
               

               Cow position:
               chrX:44225687-44225513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               257-435
               

               Cow position:
               chrX:597430-597259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               257-435
               

               Cow position:
               chrX:13347317-13347488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               257-435
               

               Cow position:
               chrX:41991090-41990904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               22, 17
               

               Conread position:
               257-483
               

               Cow position:
               chrX:23497643-23497433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               213, 16
               

               Conread position:
               258-412
               

               Cow position:
               chrX:38346969-38347118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               259-414
               

               Cow position:
               chrX:25049058-25048904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               30, 108
               

               Conread position:
               259-455
               

               Cow position:
               chrX:10415207-10415013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               259-474
               

               Cow position:
               chrX:37867477-37867686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               20, 100
               

               Conread position:
               260-465
               

               Cow position:
               chrX:4602896-4602690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               14, 38
               

               Conread position:
               263-456
               

               Cow position:
               chrX:47100547-47100354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               104, 86
               

               Conread position:
               264-454
               

               Cow position:
               chrX:48574304-48574113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               171, 12
               

               Conread position:
               264-456
               

               Cow position:
               chrX:45044501-45044694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               12, 87
               

               Conread position:
               268-432
               

               Cow position:
               chrX:11813127-11813290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               13, 108
               

               Conread position:
               269-419
               

               Cow position:
               chrX:16770123-16770268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               269-433
               

               Cow position:
               chrX:22552924-22552762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               10, 93
               

               Conread position:
               275-435
               

               Cow position:
               chrX:37717786-37717941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               275-457
               

               Cow position:
               chrX:9451407-9451581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               277-432
               

               Cow position:
               chrX:10237849-10237697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               277-435
               

               Cow position:
               chrX:11602419-11602268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               277-443
               

               Cow position:
               chrX:3494981-3494823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               277-443
               

               Cow position:
               chrX:23485585-23485757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               277-455
               

               Cow position:
               chrX:41199288-41199460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               29, 86
               

               Conread position:
               277-457
               

               Cow position:
               chrX:11589303-11589126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               277-457
               

               Cow position:
               chrX:26882016-26881837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               168, 81
               

               Conread position:
               277-457
               

               Cow position:
               chrX:31983521-31983334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               277-464
               

               Cow position:
               chrX:39642558-39642379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               178, 35
               

               Conread position:
               277-468
               

               Cow position:
               chrX:5915252-5915444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 84
               

               Conread position:
               277-470
               

               Cow position:
               chrX:1396180-1396370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               277-486
               

               Cow position:
               chrX:41363795-41363583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               73, 173
               

               Conread position:
               279-435
               

               Cow position:
               chrX:41166759-41166610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               279-452
               

               Cow position:
               chrX:6480530-6480358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               156, 80
               

               Conread position:
               279-454
               

               Cow position:
               chrX:34194015-34193842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               279-456
               

               Cow position:
               chrX:16801197-16801027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               280-409
               

               Cow position:
               chrX:24633456-24633330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               280-435
               

               Cow position:
               chrX:5097732-5097575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               17, 87
               

               Conread position:
               280-435
               

               Cow position:
               chrX:41215389-41215542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               280-438
               

               Cow position:
               chrX:25827068-25826917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               280-482
               

               Cow position:
               chrX:19000193-19000394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               169, 77
               

               Conread position:
               282-455
               

               Cow position:
               chrX:28106916-28107087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               160, 85
               

               Conread position:
               282-456
               

               Cow position:
               chrX:11674178-11674352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               5, 58
               

               Conread position:
               283-449
               

               Cow position:
               chrX:33678403-33678237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               54, 86
               

               Conread position:
               283-463
               

               Cow position:
               chrX:30789461-30789282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               72, 93
               

               Conread position:
               284-423
               

               Cow position:
               chrX:11678648-11678786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               284-435
               

               Cow position:
               chrX:35509608-35509461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               287-480
               

               Cow position:
               chrX:42506875-42506675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               288-464
               

               Cow position:
               chrX:3542931-3543112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               82, 158
               

               Conread position:
               291-483
               

               Cow position:
               chrX:32654915-32655100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               87, 48
               

               Conread position:
               292-452
               

               Cow position:
               chrX:31279845-31279690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               146, 82
               

               Conread position:
               292-463
               

               Cow position:
               chrX:11670765-11670936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               161, 75
               

               Conread position:
               293-486
               

               Cow position:
               chrX:17929081-17929267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               294-459
               

               Cow position:
               chrX:37844076-37844243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               46, 145
               

               Conread position:
               298-458
               

               Cow position:
               chrX:1996367-1996210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               299-435
               

               Cow position:
               chrX:42314806-42314672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               103
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               302-469
               

               Cow position:
               chrX:39887125-39886959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               56, 78
               

               Conread position:
               305-443
               

               Cow position:
               chrX:10479841-10479977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               311-442
               

               Cow position:
               chrX:40583216-40583087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               311-461
               

               Cow position:
               chrX:42159039-42159185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               311-476
               

               Cow position:
               chrX:36962848-36963012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               134, 28
               

               Conread position:
               313-454
               

               Cow position:
               chrX:41194005-41194143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               108, 18
               

               Conread position:
               313-483
               

               Cow position:
               chrX:6855959-6856127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               328-465
               

               Cow position:
               chrX:19162016-19161880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               109, 39
               

               Conread position:
               329-456
               

               Cow position:
               chrX:23185222-23185097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               99
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               329-457
               

               Cow position:
               chrX:38080263-38080389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               98
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               31, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-166
Cow position:	chrX:2206751-2206595 (view UCSC Genome Browser custom track)
Alignm length:	166
Alignm identity:	122
Alignm E-value:	7e-22
Alignm gaps (pig, cow):	85, 0
Conread position:	1-191
Cow position:	chrX:38967443-38967628 (view UCSC Genome Browser custom track)
Alignm length:	195
Alignm identity:	153
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	72, 94
Conread position:	1-194
Cow position:	chrX:33020278-33020467 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	150
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	68, 128
Conread position:	1-195
Cow position:	chrX:2648558-2648369 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	138
Alignm E-value:	7e-22
Alignm gaps (pig, cow):	66, 124
Conread position:	1-196
Cow position:	chrX:48684430-48684239 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	149
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	183, 129
Conread position:	1-202
Cow position:	chrX:35388113-35387911 (view UCSC Genome Browser custom track)
Alignm length:	210
Alignm identity:	154
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	68, 134
Conread position:	1-203
Cow position:	chrX:42339143-42338954 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	159
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	68, 89
Conread position:	1-204
Cow position:	chrX:2383281-2383482 (view UCSC Genome Browser custom track)
Alignm length:	209
Alignm identity:	150
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	66, 124
Conread position:	1-207
Cow position:	chrX:42282225-42282424 (view UCSC Genome Browser custom track)
Alignm length:	210
Alignm identity:	147
Alignm E-value:	7e-22
Alignm gaps (pig, cow):	71, 125
Conread position:	1-212
Cow position:	chrX:46315588-46315376 (view UCSC Genome Browser custom track)
Alignm length:	220
Alignm identity:	161
Alignm E-value:	5e-29
Alignm gaps (pig, cow):	65, 134
Conread position:	1-216
Cow position:	chrX:35609779-35609993 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	170
Alignm E-value:	1e-38
Alignm gaps (pig, cow):	68, 127
Conread position:	1-235
Cow position:	chrX:20582823-20583044 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	171
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	71, 95
Conread position:	1-238
Cow position:	chrX:23497872-23497642 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	181
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	71, 87
Conread position:	1-243
Cow position:	chrX:45015379-45015606 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	176
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	70, 0
Conread position:	1-245
Cow position:	chrX:26285772-26286013 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	193
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	63, 127
Conread position:	1-246
Cow position:	chrX:10095819-10096065 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	165
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	109, 101
Conread position:	1-250
Cow position:	chrX:9997541-9997297 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	184
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	66, 124
Conread position:	1-251
Cow position:	chrX:41743705-41743952 (view UCSC Genome Browser custom track)
Alignm length:	255
Alignm identity:	198
Alignm E-value:	0
Alignm gaps (pig, cow):	68, 81
Conread position:	1-253
Cow position:	chrX:12115832-12116087 (view UCSC Genome Browser custom track)
Alignm length:	257
Alignm identity:	193
Alignm E-value:	0
Alignm gaps (pig, cow):	72, 211
Conread position:	1-256
Cow position:	chrX:14924793-14925043 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	197
Alignm E-value:	2.8026e-45
Alignm gaps (pig, cow):	68, 27