Cow genome map

Conread name: rfhi4033b_e23.y1

Conread position: 1-122
Cow position: chr12:5904970-5904849 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 21, 74

Conread position: 1-157
Cow position: chr12:1345516-1345355 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 1-161
Cow position: chr12:10490286-10490128 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 61

Conread position: 1-162
Cow position: chr12:45540832-45540671 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 22, 75

Conread position: 1-167
Cow position: chr12:30016635-30016798 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 21, 53

Conread position: 1-167
Cow position: chr12:32088677-32088511 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 87

Conread position: 1-200
Cow position: chr12:10988793-10988597 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 19, 74

Conread position: 1-203
Cow position: chr12:23441501-23441703 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 22, 87

Conread position: 1-214
Cow position: chr12:6954754-6954547 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 60

Conread position: 1-222
Cow position: chr12:23475189-23474970 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 21, 80

Conread position: 1-224
Cow position: chr12:6186711-6186931 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 21, 75

Conread position: 1-234
Cow position: chr12:3070296-3070063 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 21, 77

Conread position: 1-237
Cow position: chr12:5226672-5226436 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 21, 80

Conread position: 1-243
Cow position: chr12:31260971-31261213 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-253
Cow position: chr12:22202243-22202495 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 21, 85

Conread position: 1-257
Cow position: chr12:22480563-22480307 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 21, 87

Conread position: 1-260
Cow position: chr12:31217618-31217365 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 172
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 42

Conread position: 1-260
Cow position: chr12:34176993-34176734 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-265
Cow position: chr12:3364325-3364061 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 154
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 22, 87

Conread position: 1-277
Cow position: chr12:249882-250156 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 21, 87

Conread position: 1-289
Cow position: chr12:8774102-8773816 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 75

Conread position: 1-289
Cow position: chr12:13042803-13043091 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-290
Cow position: chr12:1774476-1774769 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 21, 205

Conread position: 1-291
Cow position: chr12:12177803-12178080 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 75

Conread position: 1-291
Cow position: chr12:20994329-20994616 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 31

Conread position: 1-291
Cow position: chr12:25313275-25313565 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 75

Conread position: 1-292
Cow position: chr12:27506211-27506502 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-293
Cow position: chr12:1885902-1886212 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 167, 86

Conread position: 1-293
Cow position: chr12:5713405-5713110 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-296
Cow position: chr12:1093338-1093045 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 22, 61

Conread position: 1-296
Cow position: chr12:3180847-3180558 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:3716835-3717130 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 1-296
Cow position: chr12:10359135-10358839 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 81

Conread position: 1-296
Cow position: chr12:11101686-11101391 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:19198472-19198179 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr12:19871653-19871355 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 76

Conread position: 1-296
Cow position: chr12:21212221-21211927 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 57

Conread position: 1-296
Cow position: chr12:21250876-21251169 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 87

Conread position: 1-296
Cow position: chr12:21432778-21432483 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 79

Conread position: 1-296
Cow position: chr12:22748654-22748358 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:22979455-22979748 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 87

Conread position: 1-296
Cow position: chr12:24029044-24029336 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:25096827-25097122 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:25148180-25148474 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:27994539-27994244 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 1-296
Cow position: chr12:28012793-28013088 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:32011339-32011634 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:32147191-32147486 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:32656987-32656692 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:32848997-32848711 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 73

Conread position: 1-296
Cow position: chr12:36287577-36287869 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:36445824-36445531 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 86

Conread position: 1-296
Cow position: chr12:38893802-38893507 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 95

Conread position: 1-296
Cow position: chr12:41337794-41338089 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:43681443-43681148 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr12:46111679-46111974 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-302
Cow position: chr12:5110626-5110924 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-304
Cow position: chr12:36568907-36569210 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-305
Cow position: chr12:8841620-8841922 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 1-305
Cow position: chr12:47803591-47803305 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 65

Conread position: 2-263
Cow position: chr12:3094185-3094438 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 79

Conread position: 2-267
Cow position: chr12:24205967-24205707 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 20, 73

Conread position: 2-296
Cow position: chr12:21904794-21904510 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 65

Conread position: 2-296
Cow position: chr12:31328892-31329187 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 20, 79

Conread position: 2-296
Cow position: chr12:33297067-33296776 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 73

Conread position: 2-296
Cow position: chr12:48416305-48416601 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 72

Conread position: 2-302
Cow position: chr12:17981824-17981548 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 33

Conread position: 2-303
Cow position: chr12:23294670-23294370 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 36

Conread position: 2-304
Cow position: chr12:19155424-19155725 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 21, 130

Conread position: 3-248
Cow position: chr12:8172341-8172101 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 19, 78

Conread position: 3-255
Cow position: chr12:19868665-19868398 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 20, 0

Conread position: 3-267
Cow position: chr12:24447432-24447696 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 19, 90

Conread position: 3-293
Cow position: chr12:7961309-7961595 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 73

Conread position: 3-296
Cow position: chr12:10931521-10931228 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 85

Conread position: 3-296
Cow position: chr12:11582596-11582313 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 73

Conread position: 3-296
Cow position: chr12:25265897-25266190 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 93

Conread position: 3-296
Cow position: chr12:41973337-41973629 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 20, 8

Conread position: 3-302
Cow position: chr12:28737958-28737662 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 106

Conread position: 4-296
Cow position: chr12:32758132-32757840 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 84

Conread position: 5-292
Cow position: chr12:7885452-7885740 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 19

Conread position: 5-296
Cow position: chr12:17718734-17718444 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 75

Conread position: 17-292
Cow position: chr12:15797336-15797074 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 214, 58

Conread position: 20-296
Cow position: chr12:6105936-6106205 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 20-296
Cow position: chr12:27435743-27436006 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 27-172
Cow position: chr12:1501503-1501359 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 30-296
Cow position: chr12:23378537-23378275 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 138, 45

Conread position: 32-266
Cow position: chr12:1173597-1173830 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 126, 23

Conread position: 46-296
Cow position: chr12:1408210-1407969 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 54-260
Cow position: chr12:41595606-41595402 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 89, 21

Conread position: 86-296
Cow position: chr12:8674713-8674922 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 91, 0

Conread position: 86-300
Cow position: chr12:42232663-42232450 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 211, 0

Show alignments to all cow chromosomes.