Cow genome map

Conread name: rfhi4033b_e23.y1

Conread position: 1-128
Cow position: chr17:20272247-20272374 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 21, 68

Conread position: 1-141
Cow position: chr17:3197314-3197454 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 96

Conread position: 1-166
Cow position: chr17:42313200-42313035 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 74

Conread position: 1-167
Cow position: chr17:979869-980035 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 21, 75

Conread position: 1-167
Cow position: chr17:12290170-12290337 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 21, 76

Conread position: 1-167
Cow position: chr17:13725580-13725414 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 95

Conread position: 1-187
Cow position: chr17:18471494-18471301 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 21, 145

Conread position: 1-198
Cow position: chr17:40802063-40801871 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 74, 0

Conread position: 1-223
Cow position: chr17:15335123-15335345 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 42

Conread position: 1-229
Cow position: chr17:8450026-8449801 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-230
Cow position: chr17:36747213-36747434 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 20, 74

Conread position: 1-240
Cow position: chr17:254409-254175 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 21, 60

Conread position: 1-243
Cow position: chr17:41893075-41893315 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 75

Conread position: 1-248
Cow position: chr17:2201613-2201366 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 21, 80

Conread position: 1-256
Cow position: chr17:144891-145137 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 53

Conread position: 1-259
Cow position: chr17:11913433-11913691 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-263
Cow position: chr17:29041587-29041845 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-264
Cow position: chr17:5380267-5380009 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 212, 0

Conread position: 1-265
Cow position: chr17:22774147-22774396 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 80

Conread position: 1-273
Cow position: chr17:3780966-3780699 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 75

Conread position: 1-277
Cow position: chr17:29075059-29075315 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 53

Conread position: 1-278
Cow position: chr17:1457064-1457337 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 75

Conread position: 1-278
Cow position: chr17:38992068-38991792 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-288
Cow position: chr17:4085379-4085096 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-290
Cow position: chr17:2698869-2698580 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 121, 61

Conread position: 1-290
Cow position: chr17:23337736-23338022 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 74

Conread position: 1-290
Cow position: chr17:36790382-36790097 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 177

Conread position: 1-291
Cow position: chr17:453157-452878 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 0

Conread position: 1-292
Cow position: chr17:8351810-8351523 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 186
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 67

Conread position: 1-292
Cow position: chr17:14212704-14212992 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 33

Conread position: 1-292
Cow position: chr17:34235935-34236226 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 1-293
Cow position: chr17:1311447-1311740 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 21, 95

Conread position: 1-293
Cow position: chr17:13674176-13674458 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 195
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 22, 56

Conread position: 1-293
Cow position: chr17:15374706-15374429 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 21, 60

Conread position: 1-293
Cow position: chr17:15439107-15438815 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-293
Cow position: chr17:20093844-20094132 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 75

Conread position: 1-293
Cow position: chr17:29824644-29824937 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 190

Conread position: 1-296
Cow position: chr17:148222-147943 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 21, 56

Conread position: 1-296
Cow position: chr17:184463-184168 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 1-296
Cow position: chr17:1672613-1672321 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 34

Conread position: 1-296
Cow position: chr17:2583703-2583413 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 21, 60

Conread position: 1-296
Cow position: chr17:4635467-4635754 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 60

Conread position: 1-296
Cow position: chr17:5043276-5043572 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 131

Conread position: 1-296
Cow position: chr17:6123099-6122804 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:6263170-6262877 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 19, 79

Conread position: 1-296
Cow position: chr17:8212372-8212082 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:8223021-8222726 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:11083819-11084114 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:14006730-14006448 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 21, 84

Conread position: 1-296
Cow position: chr17:14243142-14242850 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 57

Conread position: 1-296
Cow position: chr17:15118133-15117838 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:16447166-16447457 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 68

Conread position: 1-296
Cow position: chr17:16854781-16855076 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 111

Conread position: 1-296
Cow position: chr17:16903895-16903606 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 95

Conread position: 1-296
Cow position: chr17:17128320-17128026 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 79

Conread position: 1-296
Cow position: chr17:18123360-18123650 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr17:18777516-18777809 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 29

Conread position: 1-296
Cow position: chr17:20209559-20209860 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 144

Conread position: 1-296
Cow position: chr17:21666315-21666025 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:21770996-21770701 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:22563460-22563166 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr17:24785506-24785211 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:28024569-28024881 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 217
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 21, 0

Conread position: 1-296
Cow position: chr17:29950528-29950236 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr17:36265958-36266238 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 21, 10

Conread position: 1-296
Cow position: chr17:37415576-37415867 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 55

Conread position: 1-296
Cow position: chr17:40811059-40810772 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 21, 29

Conread position: 1-297
Cow position: chr17:15328597-15328301 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 21, 87

Conread position: 1-302
Cow position: chr17:21304605-21304305 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-302
Cow position: chr17:43471275-43471576 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-303
Cow position: chr17:3305906-3305588 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-303
Cow position: chr17:21767206-21766910 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 21

Conread position: 1-304
Cow position: chr17:17221628-17221329 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 42

Conread position: 1-304
Cow position: chr17:18591726-18591435 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 21

Conread position: 1-304
Cow position: chr17:20078359-20078655 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 21, 75

Conread position: 1-304
Cow position: chr17:29156689-29156389 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 60

Conread position: 1-304
Cow position: chr17:29212941-29212646 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 28

Conread position: 1-305
Cow position: chr17:2839334-2839045 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 21

Conread position: 1-305
Cow position: chr17:33792388-33792096 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 76

Conread position: 1-305
Cow position: chr17:33934505-33934829 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-305
Cow position: chr17:44482163-44481856 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 48

Conread position: 2-142
Cow position: chr17:16869982-16870120 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 74

Conread position: 2-144
Cow position: chr17:36159719-36159862 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 73

Conread position: 2-288
Cow position: chr17:19369758-19369473 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 37, 70

Conread position: 2-291
Cow position: chr17:20084496-20084787 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 61

Conread position: 2-293
Cow position: chr17:29471745-29471463 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 0

Conread position: 3-290
Cow position: chr17:2265502-2265216 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 85

Conread position: 3-292
Cow position: chr17:4063652-4063365 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 73

Conread position: 3-296
Cow position: chr17:4211243-4210950 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 72

Conread position: 3-296
Cow position: chr17:18201035-18200759 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 19, 55

Conread position: 3-296
Cow position: chr17:25739610-25739317 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 85

Conread position: 4-296
Cow position: chr17:50792-51078 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 18, 72

Conread position: 4-296
Cow position: chr17:13989952-13990233 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 197
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 53, 44

Conread position: 5-304
Cow position: chr17:15351348-15351059 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 214
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 182, 18

Conread position: 11-302
Cow position: chr17:22232988-22233271 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 80, 64

Conread position: 12-305
Cow position: chr17:13921536-13921253 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 63

Conread position: 20-141
Cow position: chr17:18721330-18721450 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 20-291
Cow position: chr17:14871979-14871709 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 22-227
Cow position: chr17:22134489-22134287 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 22-265
Cow position: chr17:2179136-2178899 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 232, 62

Conread position: 27-268
Cow position: chr17:3237700-3237456 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 144, 47

Conread position: 30-293
Cow position: chr17:31426040-31425782 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 39-167
Cow position: chr17:18421662-18421535 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 43-296
Cow position: chr17:14232431-14232683 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 44-296
Cow position: chr17:1784273-1784520 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 92, 24

Conread position: 46-302
Cow position: chr17:4570482-4570227 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 185, 28

Show alignments to all cow chromosomes.