Cow genome map

Conread name: rfhi4033b_e23.y1

Conread position: 1-112
Cow position: chr19:15842930-15843042 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 1-149
Cow position: chr19:14580825-14580676 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 74

Conread position: 1-152
Cow position: chr19:19501146-19501297 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 74

Conread position: 1-153
Cow position: chr19:20433698-20433845 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 75

Conread position: 1-167
Cow position: chr19:15796969-15796803 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 87

Conread position: 1-167
Cow position: chr19:23463547-23463713 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 21, 87

Conread position: 1-167
Cow position: chr19:50833358-50833523 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 87

Conread position: 1-167
Cow position: chr19:52147881-52148047 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 21, 87

Conread position: 1-168
Cow position: chr19:54542448-54542614 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 85

Conread position: 1-169
Cow position: chr19:30717434-30717268 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 22, 75

Conread position: 1-202
Cow position: chr19:30237253-30237054 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 21, 75

Conread position: 1-212
Cow position: chr19:26518786-26518997 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 87

Conread position: 1-217
Cow position: chr19:14528366-14528161 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 21, 56

Conread position: 1-233
Cow position: chr19:28575857-28576085 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 21, 26

Conread position: 1-240
Cow position: chr19:12601159-12601393 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 75

Conread position: 1-243
Cow position: chr19:35782852-35783094 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 22, 170

Conread position: 1-253
Cow position: chr19:45464678-45464427 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 194
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 80

Conread position: 1-259
Cow position: chr19:27612947-27613216 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-274
Cow position: chr19:28794786-28795053 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 95

Conread position: 1-279
Cow position: chr19:32952366-32952093 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 76

Conread position: 1-281
Cow position: chr19:42867010-42866727 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 75

Conread position: 1-287
Cow position: chr19:1152195-1151921 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 1-287
Cow position: chr19:7491635-7491345 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 21, 74

Conread position: 1-288
Cow position: chr19:9099161-9098870 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 75

Conread position: 1-288
Cow position: chr19:35781421-35781134 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-288
Cow position: chr19:40883978-40884266 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 21, 74

Conread position: 1-288
Cow position: chr19:55217351-55217063 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 76

Conread position: 1-289
Cow position: chr19:5044152-5044425 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 21, 74

Conread position: 1-290
Cow position: chr19:27081870-27082158 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-290
Cow position: chr19:40246710-40247000 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 187
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 80

Conread position: 1-293
Cow position: chr19:5902572-5902280 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-293
Cow position: chr19:7472592-7472313 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 55

Conread position: 1-293
Cow position: chr19:9704648-9704933 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 67

Conread position: 1-293
Cow position: chr19:36189243-36188964 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr19:405693-405397 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr19:1293895-1293601 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 1-296
Cow position: chr19:2269756-2270051 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 1-296
Cow position: chr19:4389119-4388833 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 29

Conread position: 1-296
Cow position: chr19:7065223-7064934 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr19:12209385-12209684 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr19:12652420-12652120 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 80

Conread position: 1-296
Cow position: chr19:14157953-14157664 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr19:22512789-22512495 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 1-296
Cow position: chr19:23488301-23488011 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 29

Conread position: 1-296
Cow position: chr19:28596917-28596626 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 1-296
Cow position: chr19:30937675-30937980 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr19:33625117-33624829 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 22, 74

Conread position: 1-296
Cow position: chr19:33945111-33944817 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr19:35381534-35381824 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr19:35843398-35843104 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 65

Conread position: 1-296
Cow position: chr19:38894263-38893969 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 196
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 22, 30

Conread position: 1-296
Cow position: chr19:39181995-39182290 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr19:39394746-39394451 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 95

Conread position: 1-296
Cow position: chr19:39602940-39603220 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 135

Conread position: 1-296
Cow position: chr19:40016047-40016337 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 21, 59

Conread position: 1-296
Cow position: chr19:40790813-40791106 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 21, 39

Conread position: 1-296
Cow position: chr19:40848944-40849239 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr19:48534270-48533978 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 19, 29

Conread position: 1-302
Cow position: chr19:4599555-4599260 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 200
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 74

Conread position: 1-303
Cow position: chr19:2588727-2588431 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-304
Cow position: chr19:14156563-14156862 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 74

Conread position: 1-304
Cow position: chr19:20403828-20403527 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-304
Cow position: chr19:30473600-30473907 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-304
Cow position: chr19:33876961-33876657 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-305
Cow position: chr19:1663612-1663313 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-305
Cow position: chr19:25085736-25085450 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 47

Conread position: 1-305
Cow position: chr19:44839642-44839930 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 70

Conread position: 2-256
Cow position: chr19:20672051-20672305 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 73

Conread position: 2-286
Cow position: chr19:743172-743442 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 28, 74

Conread position: 2-296
Cow position: chr19:197558-197258 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 202
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 20, 79

Conread position: 2-296
Cow position: chr19:930363-930071 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 20, 86

Conread position: 2-296
Cow position: chr19:32140541-32140252 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 73

Conread position: 3-292
Cow position: chr19:5733038-5732749 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 85

Conread position: 3-296
Cow position: chr19:777051-776763 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 3-296
Cow position: chr19:28450358-28450075 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 27, 71

Conread position: 4-234
Cow position: chr19:6556164-6555933 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 85

Conread position: 4-296
Cow position: chr19:1581367-1581659 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 72

Conread position: 4-296
Cow position: chr19:2019227-2019508 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 19, 47

Conread position: 4-304
Cow position: chr19:50561605-50561307 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 13

Conread position: 5-290
Cow position: chr19:46873483-46873769 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 72

Conread position: 7-302
Cow position: chr19:33648785-33649073 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 208
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 70

Conread position: 33-293
Cow position: chr19:55421552-55421300 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 0

Conread position: 46-234
Cow position: chr19:42295214-42295399 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 49-303
Cow position: chr19:267600-267348 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 138, 25

Conread position: 92-259
Cow position: chr19:9543208-9543374 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 85, 0

Conread position: 94-296
Cow position: chr19:730542-730741 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 96, 82

Show alignments to all cow chromosomes.