Cow genome map

Conread name: rfhi4033b_e23.y1

Conread position: 1-109
Cow position: chr23:14738337-14738229 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 74

Conread position: 1-131
Cow position: chr23:25412062-25412192 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 75

Conread position: 1-151
Cow position: chr23:26230568-26230418 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 74

Conread position: 1-152
Cow position: chr23:610138-609994 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 86

Conread position: 1-157
Cow position: chr23:6223254-6223100 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 1-167
Cow position: chr23:12978192-12978030 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 21, 75

Conread position: 1-167
Cow position: chr23:19056914-19057080 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 87

Conread position: 1-167
Cow position: chr23:39389507-39389341 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 87

Conread position: 1-168
Cow position: chr23:29471871-29472038 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 75

Conread position: 1-175
Cow position: chr23:29959750-29959579 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 21, 0

Conread position: 1-184
Cow position: chr23:11405247-11405427 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 31, 60

Conread position: 1-210
Cow position: chr23:20541406-20541205 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 22, 59

Conread position: 1-212
Cow position: chr23:4266874-4266663 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 87

Conread position: 1-218
Cow position: chr23:40553684-40553901 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 87

Conread position: 1-228
Cow position: chr23:29446511-29446735 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 158

Conread position: 1-236
Cow position: chr23:1321958-1322191 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 21, 75

Conread position: 1-237
Cow position: chr23:12864137-12863907 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 21, 84

Conread position: 1-237
Cow position: chr23:40825237-40825003 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 75

Conread position: 1-253
Cow position: chr23:4437055-4436805 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 11

Conread position: 1-254
Cow position: chr23:24098566-24098313 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 21, 87

Conread position: 1-255
Cow position: chr23:8290892-8290645 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 21, 74

Conread position: 1-259
Cow position: chr23:23192998-23193247 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 16

Conread position: 1-279
Cow position: chr23:36308642-36308373 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 66

Conread position: 1-289
Cow position: chr23:1535561-1535276 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-290
Cow position: chr23:6173582-6173869 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-290
Cow position: chr23:14959519-14959802 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 21, 75

Conread position: 1-290
Cow position: chr23:27402572-27402286 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 21, 87

Conread position: 1-291
Cow position: chr23:25357784-25357494 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-293
Cow position: chr23:2791335-2791616 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 21, 80

Conread position: 1-293
Cow position: chr23:4798741-4799031 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 194
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 30

Conread position: 1-293
Cow position: chr23:15215399-15215688 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 21, 87

Conread position: 1-293
Cow position: chr23:15529025-15528733 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-293
Cow position: chr23:31771832-31772120 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 1-294
Cow position: chr23:40890209-40889922 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 56

Conread position: 1-296
Cow position: chr23:771053-771348 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 1-296
Cow position: chr23:1959565-1959271 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:2023646-2023941 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:2320512-2320800 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 42

Conread position: 1-296
Cow position: chr23:2472862-2473157 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 21, 179

Conread position: 1-296
Cow position: chr23:2761336-2761042 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:3286197-3285902 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 107

Conread position: 1-296
Cow position: chr23:4516971-4516684 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-296
Cow position: chr23:4532259-4532554 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:4892134-4891839 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:8707829-8707534 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:11128456-11128162 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr23:11343935-11343640 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:11376879-11377174 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:11782224-11781928 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:14265781-14265490 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:14970516-14970808 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-296
Cow position: chr23:15180396-15180102 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 79

Conread position: 1-296
Cow position: chr23:19493287-19492992 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:20152782-20153078 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:21772471-21772767 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:24119993-24119698 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 85

Conread position: 1-296
Cow position: chr23:27313283-27312988 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:30623063-30623354 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 1-296
Cow position: chr23:30634156-30634451 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:36027814-36028109 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr23:37199072-37199370 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-301
Cow position: chr23:5882741-5882444 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 121

Conread position: 1-301
Cow position: chr23:29043222-29042922 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-302
Cow position: chr23:416365-416064 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 1-302
Cow position: chr23:3302293-3301992 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 107

Conread position: 1-303
Cow position: chr23:4636917-4637219 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-303
Cow position: chr23:22143872-22144173 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 80

Conread position: 1-304
Cow position: chr23:7359895-7359595 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 76

Conread position: 1-304
Cow position: chr23:31833565-31833864 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-305
Cow position: chr23:14839750-14840036 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 21, 80

Conread position: 1-305
Cow position: chr23:29459815-29460118 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 85

Conread position: 1-305
Cow position: chr23:29625417-29625107 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 2-290
Cow position: chr23:5870971-5871247 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 27, 0

Conread position: 2-296
Cow position: chr23:2180412-2180703 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 73

Conread position: 3-142
Cow position: chr23:17522514-17522380 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 128, 46

Conread position: 3-142
Cow position: chr23:39108384-39108522 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 60

Conread position: 3-289
Cow position: chr23:20170770-20171051 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 50, 30

Conread position: 3-296
Cow position: chr23:26828685-26828396 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 93

Conread position: 4-109
Cow position: chr23:33233887-33233992 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 71

Conread position: 4-150
Cow position: chr23:35937254-35937110 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 72

Conread position: 13-291
Cow position: chr23:10417162-10417442 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 63

Conread position: 20-296
Cow position: chr23:3877725-3877999 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 67

Conread position: 20-296
Cow position: chr23:11712248-11712524 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 186, 67

Conread position: 20-303
Cow position: chr23:25670366-25670636 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 55

Conread position: 29-293
Cow position: chr23:33817859-33817591 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 87, 56

Conread position: 30-289
Cow position: chr23:38027541-38027797 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 59-302
Cow position: chr23:19637516-19637753 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 57, 52

Conread position: 59-305
Cow position: chr23:26318663-26318417 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 58

Conread position: 68-296
Cow position: chr23:2369187-2368953 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 10, 30

Conread position: 86-296
Cow position: chr23:2720807-2720600 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 93-267
Cow position: chr23:13536770-13536595 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 0

Show alignments to all cow chromosomes.