Cow genome map

Conread name: rfhi4033b_e23.y1

Conread position: 1-147
Cow position: chr25:21120537-21120391 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 87

Conread position: 1-161
Cow position: chr25:4858271-4858431 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 87

Conread position: 1-163
Cow position: chr25:9413575-9413413 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 21, 87

Conread position: 1-165
Cow position: chr25:612757-612593 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 95

Conread position: 1-172
Cow position: chr25:20613763-20613599 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 22, 74

Conread position: 1-232
Cow position: chr25:9054890-9054667 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 80

Conread position: 1-252
Cow position: chr25:34673358-34673609 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 21, 80

Conread position: 1-253
Cow position: chr25:20495772-20495532 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 75

Conread position: 1-254
Cow position: chr25:18180589-18180340 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 37

Conread position: 1-254
Cow position: chr25:24228111-24228360 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 39, 24

Conread position: 1-262
Cow position: chr25:23366895-23366634 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 223

Conread position: 1-262
Cow position: chr25:35446173-35445918 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 21, 87

Conread position: 1-274
Cow position: chr25:29357784-29358057 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-280
Cow position: chr25:40322062-40322341 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-285
Cow position: chr25:8655519-8655234 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 68

Conread position: 1-285
Cow position: chr25:34343680-34343962 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 79

Conread position: 1-288
Cow position: chr25:13941506-13941797 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 198
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 22, 67

Conread position: 1-288
Cow position: chr25:37648645-37648372 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 44

Conread position: 1-289
Cow position: chr25:18208459-18208746 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 49

Conread position: 1-291
Cow position: chr25:10012834-10013123 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 74

Conread position: 1-291
Cow position: chr25:23361713-23361428 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 75

Conread position: 1-291
Cow position: chr25:24636915-24637206 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 22, 75

Conread position: 1-293
Cow position: chr25:2516226-2515944 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-293
Cow position: chr25:13960290-13960003 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 1-293
Cow position: chr25:16922563-16922853 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 75

Conread position: 1-293
Cow position: chr25:17995066-17995355 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 186, 14

Conread position: 1-293
Cow position: chr25:26931324-26931032 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-293
Cow position: chr25:28275440-28275730 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:11043843-11043554 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 1-296
Cow position: chr25:11956058-11955764 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 1-296
Cow position: chr25:13429884-13430176 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 22, 42

Conread position: 1-296
Cow position: chr25:13787202-13786907 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 87

Conread position: 1-296
Cow position: chr25:14756187-14756476 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 14

Conread position: 1-296
Cow position: chr25:18190150-18190439 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 84

Conread position: 1-296
Cow position: chr25:18886256-18886548 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 29

Conread position: 1-296
Cow position: chr25:19337099-19337392 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 60

Conread position: 1-296
Cow position: chr25:19923749-19923460 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:20772111-20772393 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 17, 0

Conread position: 1-296
Cow position: chr25:22151333-22151038 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 87

Conread position: 1-296
Cow position: chr25:23325800-23326093 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 21, 46

Conread position: 1-296
Cow position: chr25:24654946-24655236 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:26282252-26281958 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:26353558-26353851 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 42

Conread position: 1-296
Cow position: chr25:26780858-26781149 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:26923066-26922775 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:27019010-27019304 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:27231583-27231292 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-296
Cow position: chr25:29802517-29802812 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:32577434-32577729 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:34164334-34164628 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:34502994-34503289 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 87

Conread position: 1-296
Cow position: chr25:34508954-34509246 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 60

Conread position: 1-296
Cow position: chr25:35567658-35567950 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 87

Conread position: 1-296
Cow position: chr25:37593630-37593335 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 20, 75

Conread position: 1-296
Cow position: chr25:41121232-41120942 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 21, 80

Conread position: 1-301
Cow position: chr25:39386601-39386900 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-302
Cow position: chr25:23913897-23913598 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 76

Conread position: 1-303
Cow position: chr25:12938979-12939282 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-303
Cow position: chr25:14012070-14011768 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 197
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 135, 19

Conread position: 1-303
Cow position: chr25:40389508-40389808 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 38

Conread position: 1-304
Cow position: chr25:11929334-11929622 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 41, 0

Conread position: 2-131
Cow position: chr25:16401664-16401794 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 2-287
Cow position: chr25:15367964-15367680 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 66

Conread position: 2-288
Cow position: chr25:35625991-35626290 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 160

Conread position: 2-296
Cow position: chr25:17562266-17561981 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 79

Conread position: 2-296
Cow position: chr25:17585795-17586087 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 20, 86

Conread position: 2-296
Cow position: chr25:18072452-18072164 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 74

Conread position: 2-296
Cow position: chr25:18486686-18486399 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 74

Conread position: 3-152
Cow position: chr25:8080089-8079940 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 65

Conread position: 3-254
Cow position: chr25:19682508-19682270 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 72

Conread position: 3-267
Cow position: chr25:20075703-20075442 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 19, 151

Conread position: 3-296
Cow position: chr25:6955293-6955001 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 3-303
Cow position: chr25:4522585-4522882 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 73

Conread position: 3-303
Cow position: chr25:19367473-19367770 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 72

Conread position: 3-304
Cow position: chr25:33687981-33688294 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 73

Conread position: 3-305
Cow position: chr25:449581-449867 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 51

Conread position: 4-288
Cow position: chr25:33262854-33262566 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 19, 71

Conread position: 5-265
Cow position: chr25:24204909-24205164 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 18, 72

Conread position: 22-267
Cow position: chr25:11827065-11827310 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 40

Conread position: 22-296
Cow position: chr25:14961662-14961925 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 30

Conread position: 22-303
Cow position: chr25:2594965-2594697 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 15

Conread position: 33-291
Cow position: chr25:10633814-10634068 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 52, 25

Conread position: 45-296
Cow position: chr25:4372511-4372757 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 0

Conread position: 52-304
Cow position: chr25:28420527-28420775 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 103, 23

Conread position: 72-304
Cow position: chr25:33838542-33838307 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 70, 104

Conread position: 83-296
Cow position: chr25:37468982-37468777 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 96

Conread position: 87-296
Cow position: chr25:3172258-3172466 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 81, 0

Conread position: 96-291
Cow position: chr25:30340225-30340422 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 74, 165

Conread position: 115-302
Cow position: chr25:39513140-39512947 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 123, 190

Show alignments to all cow chromosomes.