Cow genome map
| Conread name: | rfhi4033b_e23.y1 |
| Conread position: | 1-153 |
| Cow position: | chr27:28984204-28984056 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 1-156 |
| Cow position: | chr27:816324-816478 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 1-158 |
| Cow position: | chr27:13409434-13409275 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 1-174 |
| Cow position: | chr27:4834583-4834412 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 1-181 |
| Cow position: | chr27:30583459-30583642 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 1-182 |
| Cow position: | chr27:13695544-13695364 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 1-186 |
| Cow position: | chr27:1124188-1124377 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-206 |
| Cow position: | chr27:15100080-15099876 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 1-221 |
| Cow position: | chr27:30677647-30677860 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 1-230 |
| Cow position: | chr27:12239506-12239278 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 1-254 |
| Cow position: | chr27:10306556-10306304 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 1-259 |
| Cow position: | chr27:25112599-25112344 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 1-277 |
| Cow position: | chr27:15866864-15867132 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 1-289 |
| Cow position: | chr27:2681959-2681674 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 1-289 |
| Cow position: | chr27:9262838-9263126 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 1-289 |
| Cow position: | chr27:30036310-30036020 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-291 |
| Cow position: | chr27:2557554-2557842 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 1-292 |
| Cow position: | chr27:19423938-19424229 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-292 |
| Cow position: | chr27:19523270-19523560 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-292 |
| Cow position: | chr27:21451882-21451592 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 1-293 |
| Cow position: | chr27:165481-165772 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 1-293 |
| Cow position: | chr27:1189101-1188813 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 1-293 |
| Cow position: | chr27:2331942-2331650 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 87 |
| Conread position: | 1-293 |
| Cow position: | chr27:11481370-11481078 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-293 |
| Cow position: | chr27:15870581-15870863 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 1-293 |
| Cow position: | chr27:15871890-15872172 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 109 |
| Conread position: | 1-296 |
| Cow position: | chr27:344491-344779 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:1536608-1536314 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 1-296 |
| Cow position: | chr27:3232095-3232390 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:3990361-3990656 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:4982811-4982516 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:5983591-5983886 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:8427289-8427001 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 1-296 |
| Cow position: | chr27:9333106-9332822 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 1-296 |
| Cow position: | chr27:13353745-13353450 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 1-296 |
| Cow position: | chr27:13901563-13901268 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:14297646-14297351 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 1-296 |
| Cow position: | chr27:15033452-15033747 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:16030958-16031253 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:25799697-25799400 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 1-296 |
| Cow position: | chr27:27291832-27291533 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 87 |
| Conread position: | 1-296 |
| Cow position: | chr27:27557243-27556950 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 128 |
| Conread position: | 1-297 |
| Cow position: | chr27:16787859-16788148 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 1-299 |
| Cow position: | chr27:15406060-15405769 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 1-300 |
| Cow position: | chr27:25784323-25784612 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 1-304 |
| Cow position: | chr27:26785256-26784957 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 1-305 |
| Cow position: | chr27:4824263-4823961 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 1-305 |
| Cow position: | chr27:4828933-4828634 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 21 |
| Conread position: | 1-305 |
| Cow position: | chr27:15375243-15374948 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 2-205 |
| Cow position: | chr27:16332041-16332243 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 2-288 |
| Cow position: | chr27:8592824-8592538 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 247 |
| Conread position: | 2-288 |
| Cow position: | chr27:22329928-22329659 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-296 |
| Cow position: | chr27:15272638-15272924 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 2-303 |
| Cow position: | chr27:6523842-6524142 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 3-152 |
| Cow position: | chr27:19300129-19300278 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 78 |
| Conread position: | 3-152 |
| Cow position: | chr27:26599034-26599183 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 85 |
| Conread position: | 3-291 |
| Cow position: | chr27:14380740-14380453 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 3-293 |
| Cow position: | chr27:12282127-12281844 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 3-303 |
| Cow position: | chr27:11434604-11434311 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 3-304 |
| Cow position: | chr27:25792107-25792396 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 117, 214 |
| Conread position: | 3-305 |
| Cow position: | chr27:14669627-14669331 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 9-292 |
| Cow position: | chr27:25800780-25801057 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 67 |
| Conread position: | 11-289 |
| Cow position: | chr27:27279143-27278862 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 13-304 |
| Cow position: | chr27:15697770-15697485 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 14-186 |
| Cow position: | chr27:27054071-27054241 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 68-237 |
| Cow position: | chr27:26644889-26645052 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 69-302 |
| Cow position: | chr27:16627729-16627497 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 70 |
| Conread position: | 79-305 |
| Cow position: | chr27:28051424-28051649 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 146 |
| Conread position: | 81-259 |
| Cow position: | chr27:24055065-24054889 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 81-267 |
| Cow position: | chr27:9989843-9990030 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.