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Cow genome map

           
Conread name:
           
rfty509b_i5.y2
        

               
Conread position:
               
1-196
               

               
Cow position:
               
chr3:49731874-49731663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr3:30701086-30701297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr3:75057355-75057104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
105, 155
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr3:65800357-65800629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr3:42177922-42178199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr3:66610074-66609787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr3:20437882-20437589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr3:56607-56298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 165
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr3:58969132-58968824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr3:80468887-80468599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr3:61840053-61840355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:19006431-19006739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr3:5096968-5097290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr3:53112933-53113261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr3:59101599-59101913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:49650143-49650477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr3:34270694-34271007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr3:18725871-18725552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr3:28908431-28908107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr3:38691642-38691309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr3:56059571-56059908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr3:79292598-79292929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr3:3738248-3738582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr3:57624231-57624566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr3:5100997-5100667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr3:80581435-80581759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr3:13507227-13507575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 172
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr3:8733575-8733251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr3:12712159-12711807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr3:22716516-22716188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr3:59630735-59630407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr3:81471337-81470988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr3:78946072-78945730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr3:55272279-55271938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr3:8393703-8394056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
69, 40
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr3:73460742-73461083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr3:115971-116306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:73708813-73709176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:75046108-75045739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
20, 203
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr3:68627911-68627552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr3:70565974-70565599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr3:47284601-47284947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr3:77271503-77271140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr3:72390844-72391231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:53150091-53150478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:53270590-53270978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:54959954-54960311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr3:2674793-2675182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr3:51578557-51578174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr3:60597312-60597688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 168
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr3:80564724-80565121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr3:15158805-15159192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
67, 36
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr3:17222380-17221973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr3:53909877-53910266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:7566655-7566260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:10958465-10958083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:53046893-53046497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:58540769-58540356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:59000982-59000602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:66900978-66900566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:73394880-73395276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:75158129-75158516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr3:82056354-82055967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr3:17935159-17934781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr3:52607947-52608340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr3:59691668-59692047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr3:33253117-33252728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr3:52652310-52651914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr3:80053770-80053383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:7331353-7330973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:16333570-16333969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:18066898-18067295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:31309591-31309189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:55124514-55124120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr3:44932272-44932678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr3:77006269-77006643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr3:17937075-17936672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr3:53221778-53222187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr3:56476446-56476849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr3:14552642-14553048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr3:15229055-15228665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr3:17456505-17456091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr3:18393620-18393224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr3:18459756-18459361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr3:39970108-39969687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr3:55189987-55189574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
62, 185
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr3:8393110-8393516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr3:23169306-23168888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr3:53790777-53790365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr3:6873481-6873087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr3:51234332-51233926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr3:73467383-73467804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr3:15052181-15051773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr3:22221116-22221505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 31
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr3:48241385-48241789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr3:54434737-54435147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr3:59604634-59605021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 36
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr3:5374097-5374489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr3:32584922-32585328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
41, 165
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr3:59473876-59474300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr3:64281172-64280755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr3:26682030-26681632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr3:26903879-26904280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr3:53739426-53739006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
58, 37
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr3:54945888-54946306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr3:67744864-67744454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr3:73764432-73764031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
30, 176
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr3:77188206-77188625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr3:2393202-2392787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr3:20802866-20802453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr3:23471704-23471277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr3:29813007-29813411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr3:57763987-57764401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr3:70895810-70896221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:210087-210507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:15954313-15953896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:30179847-30180268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:39171720-39171305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:75080530-75080935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:83474511-83474937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 36
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr3:18686680-18687085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr3:71231170-71231583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr3:74233959-74234365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 183
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:2506717-2506291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:14801515-14801932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
54, 273
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:19711551-19711152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:48252658-48253066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:49482945-49482527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:50768442-50768864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:53429126-53428733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:71497381-71496937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:82020080-82019657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr3:2024948-2025389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr3:65058465-65058885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 22
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr3:54740108-54739707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr3:5365450-5365861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr3:12287000-12287293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr3:72675852-72676171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
2-301
               

               
Cow position:
               
chr3:45647441-45647763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr3:59208579-59208890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
64, 35
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr3:14626387-14626053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chr3:17447843-17447507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
2-331
               

               
Cow position:
               
chr3:48296474-48296812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr3:31047184-31046813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr3:58767044-58767391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr3:61224970-61224598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 35
               

               
Conread position:
               
2-373
               

               
Cow position:
               
chr3:22232878-22232508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
2-374
               

               
Cow position:
               
chr3:8060897-8061281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
2-374
               

               
Cow position:
               
chr3:62999240-62998834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chr3:37041192-37041578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 35
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr3:68303093-68303483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr3:66885273-66884855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chr3:27274298-27274706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 41
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr3:11254385-11253982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr3:16752488-16752073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr3:77365529-77365111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
22, 263
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr3:1830798-1830390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr3:9641329-9641740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 37
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr3:27544563-27544319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr3:66292413-66292084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr3:16255034-16254719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
142, 34
               

               
Conread position:
               
3-374
               

               
Cow position:
               
chr3:23408577-23408203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr3:20997214-20996837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
3-392
               

               
Cow position:
               
chr3:68647926-68648352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 34
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr3:45881675-45882079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr3:71246802-71247200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
4-311
               

               
Cow position:
               
chr3:45647906-45648223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
4-318
               

               
Cow position:
               
chr3:15752861-15752535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr3:67930411-67930055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
7, 40
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr3:59588286-59588651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr3:29807232-29807494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr3:38346971-38347276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
50, 31
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr3:73443317-73442995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr3:27940358-27940034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
7-374
               

               
Cow position:
               
chr3:80740342-80740714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
7-379
               

               
Cow position:
               
chr3:22676315-22675942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 124
               

               
Conread position:
               
7-397
               

               
Cow position:
               
chr3:75479782-75480178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr3:3985100-3985498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr3:65968924-65969355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr3:59333537-59333941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
7-409
               

               
Cow position:
               
chr3:13330003-13329601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
8-338
               

               
Cow position:
               
chr3:82460955-82461298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
8-366
               

               
Cow position:
               
chr3:65413505-65413124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
8-397
               

               
Cow position:
               
chr3:81087839-81087461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
9-399
               

               
Cow position:
               
chr3:75050846-75050436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 35
               

               
Conread position:
               
9-402
               

               
Cow position:
               
chr3:55970276-55970700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
13-322
               

               
Cow position:
               
chr3:60265460-60265151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr3:53508406-53508726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
14-365
               

               
Cow position:
               
chr3:64011040-64010661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
14-396
               

               
Cow position:
               
chr3:71237933-71238335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
15-324
               

               
Cow position:
               
chr3:53240051-53240363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
15-398
               

               
Cow position:
               
chr3:68708230-68707841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
15-400
               

               
Cow position:
               
chr3:14465930-14465524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
16-361
               

               
Cow position:
               
chr3:74134484-74134852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
16-366
               

               
Cow position:
               
chr3:16656702-16656335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
18-400
               

               
Cow position:
               
chr3:59649039-59649447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
19-227
               

               
Cow position:
               
chr3:39328182-39328409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
19-306
               

               
Cow position:
               
chr3:84597169-84596877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
19-401
               

               
Cow position:
               
chr3:54506502-54506890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
23-379
               

               
Cow position:
               
chr3:38863903-38864283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
23-395
               

               
Cow position:
               
chr3:68156537-68156910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
23-398
               

               
Cow position:
               
chr3:25477598-25477973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
23-398
               

               
Cow position:
               
chr3:76713536-76713126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
24-399
               

               
Cow position:
               
chr3:45211082-45211488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
25-400
               

               
Cow position:
               
chr3:55319110-55318713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
30-320
               

               
Cow position:
               
chr3:29360337-29360048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
32-292
               

               
Cow position:
               
chr3:7940763-7940483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
5, 247
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr3:4049993-4050291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
33, 134
               

               
Conread position:
               
36-396
               

               
Cow position:
               
chr3:54100915-54100530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
36-397
               

               
Cow position:
               
chr3:68586829-68587202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr3:61169605-61169960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 219
               

               
Conread position:
               
43-364
               

               
Cow position:
               
chr3:55010356-55010023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 214
               

               
Conread position:
               
47-398
               

               
Cow position:
               
chr3:19792711-19793083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 235
               

               
Conread position:
               
48-309
               

               
Cow position:
               
chr3:24352675-24352951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
53-394
               

               
Cow position:
               
chr3:24872540-24872869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
53-396
               

               
Cow position:
               
chr3:30940641-30940984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
56-361
               

               
Cow position:
               
chr3:11987154-11987473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 132
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr3:59884244-59883964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
38, 216
               

               
Conread position:
               
60-367
               

               
Cow position:
               
chr3:59040408-59040721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
61-391
               

               
Cow position:
               
chr3:6182366-6182054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
137, 5
               

               
Conread position:
               
62-325
               

               
Cow position:
               
chr3:84175982-84175716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
63-406
               

               
Cow position:
               
chr3:7763500-7763853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 105
               

               
Conread position:
               
64-306
               

               
Cow position:
               
chr3:15506287-15506536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 202
               

               
Conread position:
               
64-397
               

               
Cow position:
               
chr3:58765241-58764906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
65-397
               

               
Cow position:
               
chr3:57273903-57274240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
66-293
               

               
Cow position:
               
chr3:3638024-3638253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
66-299
               

               
Cow position:
               
chr3:74502484-74502244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
66-310
               

               
Cow position:
               
chr3:26219212-26218960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
44, 94
               

               
Conread position:
               
66-325
               

               
Cow position:
               
chr3:80071964-80072235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
66-339
               

               
Cow position:
               
chr3:4319552-4319832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
66-342
               

               
Cow position:
               
chr3:20677997-20677723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
66-347
               

               
Cow position:
               
chr3:26920746-26921035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
31, 100
               

               
Conread position:
               
66-368
               

               
Cow position:
               
chr3:15388053-15388374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
66-372
               

               
Cow position:
               
chr3:68616487-68616176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 95
               

               
Conread position:
               
66-374
               

               
Cow position:
               
chr3:70609464-70609786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 186
               

               
Conread position:
               
66-380
               

               
Cow position:
               
chr3:53875921-53875596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 94
               

               
Conread position:
               
66-390
               

               
Cow position:
               
chr3:76922825-76922500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 129
               

               
Conread position:
               
66-395
               

               
Cow position:
               
chr3:70762285-70761945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 96
               

               
Conread position:
               
66-396
               

               
Cow position:
               
chr3:11063220-11063541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
66-397
               

               
Cow position:
               
chr3:62046500-62046851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
46, 129
               

               
Conread position:
               
66-398
               

               
Cow position:
               
chr3:3649371-3649058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
66-399
               

               
Cow position:
               
chr3:48810799-48810449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
66-399
               

               
Cow position:
               
chr3:68881274-68880944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
66-400
               

               
Cow position:
               
chr3:55712267-55712616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 214
               

               
Conread position:
               
66-401
               

               
Cow position:
               
chr3:36418628-36418303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
66-402
               

               
Cow position:
               
chr3:14601875-14601527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
66-402
               

               
Cow position:
               
chr3:15751884-15751538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 212
               

               
Conread position:
               
66-402
               

               
Cow position:
               
chr3:36375706-36375351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
26, 210
               

               
Conread position:
               
66-402
               

               
Cow position:
               
chr3:66884103-66883762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
67-402
               

               
Cow position:
               
chr3:15153531-15153879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
41, 196
               

               
Conread position:
               
68-373
               

               
Cow position:
               
chr3:73820529-73820205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
68-392
               

               
Cow position:
               
chr3:9663332-9662994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
69-318
               

               
Cow position:
               
chr3:74242836-74243093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
69-331
               

               
Cow position:
               
chr3:58973144-58973408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
69-354
               

               
Cow position:
               
chr3:14598791-14599067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
69-354
               

               
Cow position:
               
chr3:26981905-26982196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
69-360
               

               
Cow position:
               
chr3:60264861-60264577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
69-361
               

               
Cow position:
               
chr3:35153462-35153751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
69-366
               

               
Cow position:
               
chr3:23105525-23105215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
38, 148
               

               
Conread position:
               
69-374
               

               
Cow position:
               
chr3:52487475-52487790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
69-379
               

               
Cow position:
               
chr3:75853490-75853170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 205
               

               
Conread position:
               
69-392
               

               
Cow position:
               
chr3:59610880-59610544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
69-395
               

               
Cow position:
               
chr3:48362926-48363247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
69-395
               

               
Cow position:
               
chr3:75107635-75107950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
69-397
               

               
Cow position:
               
chr3:48073033-48072706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
55, 86
               

               
Conread position:
               
69-398
               

               
Cow position:
               
chr3:59597024-59597354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
69-401
               

               
Cow position:
               
chr3:3556390-3556734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
70-357
               

               
Cow position:
               
chr3:61143942-61144232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
70-361
               

               
Cow position:
               
chr3:77581950-77582251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
71-304
               

               
Cow position:
               
chr3:34669885-34669647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 91
               

               
Conread position:
               
71-306
               

               
Cow position:
               
chr3:30222028-30222279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 204
               

               
Conread position:
               
71-347
               

               
Cow position:
               
chr3:49790968-49790682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
71-366
               

               
Cow position:
               
chr3:44101812-44102118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
71-393
               

               
Cow position:
               
chr3:34871411-34871749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 201
               

               
Conread position:
               
71-399
               

               
Cow position:
               
chr3:24468536-24468195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
40, 96
               

               
Conread position:
               
71-401
               

               
Cow position:
               
chr3:76268139-76267789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
24, 185
               

               
Conread position:
               
72-347
               

               
Cow position:
               
chr3:26874433-26874716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 154
               

               
Conread position:
               
72-366
               

               
Cow position:
               
chr3:54374016-54373707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
72-373
               

               
Cow position:
               
chr3:12978773-12978455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
72-398
               

               
Cow position:
               
chr3:67520319-67519995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 197
               

               
Conread position:
               
73-323
               

               
Cow position:
               
chr3:24935215-24935468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
73-374
               

               
Cow position:
               
chr3:20675030-20674718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
73-398
               

               
Cow position:
               
chr3:71478436-71478779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
16, 202
               

               
Conread position:
               
73-399
               

               
Cow position:
               
chr3:78443714-78443381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
74-319
               

               
Cow position:
               
chr3:63269069-63269323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
74-361
               

               
Cow position:
               
chr3:19793747-19793445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
74-379
               

               
Cow position:
               
chr3:29946240-29946552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
74-395
               

               
Cow position:
               
chr3:2648668-2648330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
75-298
               

               
Cow position:
               
chr3:46541981-46541749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
80-364
               

               
Cow position:
               
chr3:70334833-70334544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
81-398
               

               
Cow position:
               
chr3:3032268-3032590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
81-401
               

               
Cow position:
               
chr3:60389630-60389936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
86-311
               

               
Cow position:
               
chr3:74846843-74846616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
87-379
               

               
Cow position:
               
chr3:3889708-3889412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
24, 161
               

               
Conread position:
               
87-413
               

               
Cow position:
               
chr3:48900479-48900133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 185
               

               
Conread position:
               
88-325
               

               
Cow position:
               
chr3:10103910-10104148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
89-366
               

               
Cow position:
               
chr3:74079768-74079488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
89-402
               

               
Cow position:
               
chr3:58527262-58527567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
90-393
               

               
Cow position:
               
chr3:23920558-23920250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
90-400
               

               
Cow position:
               
chr3:76024381-76024693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
104-400
               

               
Cow position:
               
chr3:3656399-3656701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
107-377
               

               
Cow position:
               
chr3:83988420-83988697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
108-373
               

               
Cow position:
               
chr3:35621191-35621454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 151
               

               
Conread position:
               
109-339
               

               
Cow position:
               
chr3:79645550-79645304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
110-322
               

               
Cow position:
               
chr3:7427891-7428101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 152
               

               
Conread position:
               
110-374
               

               
Cow position:
               
chr3:15951020-15950756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
111-293
               

               
Cow position:
               
chr3:27545929-27545744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 132
               

               
Conread position:
               
111-379
               

               
Cow position:
               
chr3:65236918-65237188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
88, 57
               

               
Conread position:
               
111-379
               

               
Cow position:
               
chr3:72342138-72342413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 10
               

               
Conread position:
               
111-402
               

               
Cow position:
               
chr3:17058648-17058356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
108, 75
               

               
Conread position:
               
111-402
               

               
Cow position:
               
chr3:48468075-48468363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
98, 46
               

               
Conread position:
               
112-320
               

               
Cow position:
               
chr3:33693711-33693922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
112-325
               

               
Cow position:
               
chr3:55983988-55984206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 140
               

               
Conread position:
               
112-337
               

               
Cow position:
               
chr3:27727936-27727713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 27
               

               
Conread position:
               
112-361
               

               
Cow position:
               
chr3:65019972-65019712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
112-366
               

               
Cow position:
               
chr3:53318298-53318560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 41
               

               
Conread position:
               
112-374
               

               
Cow position:
               
chr3:47417672-47417410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
54, 41
               

               
Conread position:
               
112-374
               

               
Cow position:
               
chr3:73298980-73299226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
87, 49
               

               
Conread position:
               
112-374
               

               
Cow position:
               
chr3:78093490-78093232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr3:7661746-7662022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr3:19585755-19586029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
112-392
               

               
Cow position:
               
chr3:55177857-55177576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 152
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr3:3883925-3883638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
57, 149
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr3:31361312-31361604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
112-396
               

               
Cow position:
               
chr3:57704216-57704511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
54, 158
               

               
Conread position:
               
112-396
               

               
Cow position:
               
chr3:76155881-76156165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
112-397
               

               
Cow position:
               
chr3:21081482-21081200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
112-397
               

               
Cow position:
               
chr3:58318060-58317763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
112-398
               

               
Cow position:
               
chr3:71238367-71238658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 99
               

               
Conread position:
               
112-399
               

               
Cow position:
               
chr3:21015067-21014768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
112-400
               

               
Cow position:
               
chr3:55094341-55094046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 154
               

               
Conread position:
               
112-401
               

               
Cow position:
               
chr3:1517619-1517327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
112-401
               

               
Cow position:
               
chr3:15443836-15443546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
85, 148
               

               
Conread position:
               
112-401
               

               
Cow position:
               
chr3:83215153-83215459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 150
               

               
Conread position:
               
112-402
               

               
Cow position:
               
chr3:18059595-18059891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
112-402
               

               
Cow position:
               
chr3:18426806-18426514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 93
               

               
Conread position:
               
112-403
               

               
Cow position:
               
chr3:17235316-17235016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
112-405
               

               
Cow position:
               
chr3:70334070-70333778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 41
               

               
Conread position:
               
113-379
               

               
Cow position:
               
chr3:22165523-22165250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 146
               

               
Conread position:
               
113-401
               

               
Cow position:
               
chr3:3316918-3316624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
115-374
               

               
Cow position:
               
chr3:75238354-75238621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
116-361
               

               
Cow position:
               
chr3:14194282-14194044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
120-392
               

               
Cow position:
               
chr3:39248120-39247852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
120-400
               

               
Cow position:
               
chr3:56678452-56678160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
123-366
               

               
Cow position:
               
chr3:27976623-27976372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
125-379
               

               
Cow position:
               
chr3:49363021-49363272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
125-398
               

               
Cow position:
               
chr3:8349649-8349385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
125-402
               

               
Cow position:
               
chr3:75778155-75777882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
127-403
               

               
Cow position:
               
chr3:48459424-48459140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
128-296
               

               
Cow position:
               
chr3:81277562-81277390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
128-361
               

               
Cow position:
               
chr3:14546911-14547144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
128-361
               

               
Cow position:
               
chr3:84250636-84250404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
5, 133
               

               
Conread position:
               
128-397
               

               
Cow position:
               
chr3:23203325-23203044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
129-398
               

               
Cow position:
               
chr3:51609276-51609001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
24, 42
               

               
Conread position:
               
129-398
               

               
Cow position:
               
chr3:69785716-69785439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 133
               

               
Conread position:
               
129-403
               

               
Cow position:
               
chr3:23804427-23804692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
130-366
               

               
Cow position:
               
chr3:11640639-11640886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 27
               

               
Conread position:
               
132-396
               

               
Cow position:
               
chr3:83491000-83491265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
132-398
               

               
Cow position:
               
chr3:31350192-31349928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 126
               

               
Conread position:
               
133-316
               

               
Cow position:
               
chr3:23667537-23667719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
133-396
               

               
Cow position:
               
chr3:64196738-64197007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
134-374
               

               
Cow position:
               
chr3:18001116-18001347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
134-393
               

               
Cow position:
               
chr3:49344616-49344868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
137-374
               

               
Cow position:
               
chr3:40145385-40145628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
137-374
               

               
Cow position:
               
chr3:48478114-48477882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chr3:76269817-76270069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
140-366
               

               
Cow position:
               
chr3:10668958-10668729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
147-393
               

               
Cow position:
               
chr3:35074811-35075048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
149-325
               

               
Cow position:
               
chr3:56704391-56704213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
150-374
               

               
Cow position:
               
chr3:2637859-2638094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
150-379
               

               
Cow position:
               
chr3:12090604-12090842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
157-354
               

               
Cow position:
               
chr3:24596478-24596286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
157-397
               

               
Cow position:
               
chr3:3946984-3947211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
223, 10
               

               
Conread position:
               
157-398
               

               
Cow position:
               
chr3:11229426-11229184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
157-398
               

               
Cow position:
               
chr3:20841935-20841698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
157-399
               

               
Cow position:
               
chr3:54067733-54067978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
158-323
               

               
Cow position:
               
chr3:21997851-21997682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr3:23753437-23753629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
159-418
               

               
Cow position:
               
chr3:71474461-71474206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
162-396
               

               
Cow position:
               
chr3:5040364-5040124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
162-397
               

               
Cow position:
               
chr3:81234331-81234572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 107
               

               
Conread position:
               
163-397
               

               
Cow position:
               
chr3:71423608-71423384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
163-402
               

               
Cow position:
               
chr3:16107414-16107190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
164-310
               

               
Cow position:
               
chr3:67959971-67959829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
166-372
               

               
Cow position:
               
chr3:2483950-2484161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
166-392
               

               
Cow position:
               
chr3:4548975-4549192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 6
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chr3:74644503-74644742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
167-398
               

               
Cow position:
               
chr3:5305746-5305984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
168-362
               

               
Cow position:
               
chr3:38783554-38783754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
168-366
               

               
Cow position:
               
chr3:74787380-74787576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
168-373
               

               
Cow position:
               
chr3:39988288-39988092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 38
               

               
Conread position:
               
168-375
               

               
Cow position:
               
chr3:79196707-79196925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
168-379
               

               
Cow position:
               
chr3:56949140-56948931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
168-399
               

               
Cow position:
               
chr3:40213085-40212846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
168-399
               

               
Cow position:
               
chr3:69650941-69650716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
170-325
               

               
Cow position:
               
chr3:77589469-77589622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
170-392
               

               
Cow position:
               
chr3:73335234-73335454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
170-401
               

               
Cow position:
               
chr3:11281716-11281959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
171-364
               

               
Cow position:
               
chr3:16505524-16505336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
28, 65
               

               
Conread position:
               
171-371
               

               
Cow position:
               
chr3:82123597-82123398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
171-394
               

               
Cow position:
               
chr3:23640296-23640516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 88
               

               
Conread position:
               
173-405
               

               
Cow position:
               
chr3:82366082-82366317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
177-361
               

               
Cow position:
               
chr3:19788868-19788686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
178-395
               

               
Cow position:
               
chr3:54905576-54905784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
179-398
               

               
Cow position:
               
chr3:31804793-31804588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
180-374
               

               
Cow position:
               
chr3:9120805-9121003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
180-400
               

               
Cow position:
               
chr3:41863584-41863805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
182-402
               

               
Cow position:
               
chr3:84137853-84137623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
187-392
               

               
Cow position:
               
chr3:18700138-18699926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
192-400
               

               
Cow position:
               
chr3:70402621-70402821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
193-398
               

               
Cow position:
               
chr3:60186123-60186334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
194-397
               

               
Cow position:
               
chr3:59681929-59681727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
195-401
               

               
Cow position:
               
chr3:41366730-41366514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
195-404
               

               
Cow position:
               
chr3:63860631-63860416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
198-401
               

               
Cow position:
               
chr3:8523171-8522970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
198-404
               

               
Cow position:
               
chr3:75966802-75966595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
208-380
               

               
Cow position:
               
chr3:83671844-83672021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
211-392
               

               
Cow position:
               
chr3:76056289-76056113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
211-393
               

               
Cow position:
               
chr3:22078071-22078254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
213-389
               

               
Cow position:
               
chr3:53256526-53256706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
213-397
               

               
Cow position:
               
chr3:31352880-31352686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
214-366
               

               
Cow position:
               
chr3:16867826-16867973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr3:4518183-4518000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr3:70333225-70333049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
214-401
               

               
Cow position:
               
chr3:19611352-19611169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
215-374
               

               
Cow position:
               
chr3:41510577-41510739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
215-393
               

               
Cow position:
               
chr3:23132168-23131992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
215-396
               

               
Cow position:
               
chr3:67407365-67407188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
215-398
               

               
Cow position:
               
chr3:8526364-8526197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 20
               

               
Conread position:
               
215-398
               

               
Cow position:
               
chr3:17531737-17531551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 40
               

               
Conread position:
               
215-398
               

               
Cow position:
               
chr3:51150128-51150318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 44
               

               
Conread position:
               
215-398
               

               
Cow position:
               
chr3:77653928-77654106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
152, 40
               

               
Conread position:
               
215-400
               

               
Cow position:
               
chr3:68004701-68004520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
215-401
               

               
Cow position:
               
chr3:47199126-47198940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
215-401
               

               
Cow position:
               
chr3:52845557-52845739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
215-404
               

               
Cow position:
               
chr3:37848858-37848665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
216-366
               

               
Cow position:
               
chr3:5003634-5003782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 44
               

               
Conread position:
               
216-378
               

               
Cow position:
               
chr3:24922749-24922906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
217-361
               

               
Cow position:
               
chr3:5737754-5737891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 51
               

               
Conread position:
               
217-401
               

               
Cow position:
               
chr3:74050699-74050524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
150, 38
               

               
Conread position:
               
219-374
               

               
Cow position:
               
chr3:6579489-6579641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
220-354
               

               
Cow position:
               
chr3:25037986-25037856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
220-357
               

               
Cow position:
               
chr3:35582846-35582982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
220-373
               

               
Cow position:
               
chr3:3401553-3401701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:20021275-20021433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:26977540-26977702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 159
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:62370061-62370222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
220-394
               

               
Cow position:
               
chr3:77276452-77276285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
220-396
               

               
Cow position:
               
chr3:23818497-23818666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 35
               

               
Conread position:
               
220-396
               

               
Cow position:
               
chr3:28897016-28896841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
220-396
               

               
Cow position:
               
chr3:39812053-39812238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
220-397
               

               
Cow position:
               
chr3:50350963-50350793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 42
               

               
Conread position:
               
220-397
               

               
Cow position:
               
chr3:56943920-56943745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 35
               

               
Conread position:
               
220-398
               

               
Cow position:
               
chr3:22924369-22924193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
220-399
               

               
Cow position:
               
chr3:80958505-80958321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
220-401
               

               
Cow position:
               
chr3:24774659-24774826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
220-401
               

               
Cow position:
               
chr3:31115264-31115095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
162, 35
               

               
Conread position:
               
220-401
               

               
Cow position:
               
chr3:55730463-55730276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
221-378
               

               
Cow position:
               
chr3:44594627-44594788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 15
               

               
Conread position:
               
221-379
               

               
Cow position:
               
chr3:15160527-15160682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
221-392
               

               
Cow position:
               
chr3:26393293-26393124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
221-400
               

               
Cow position:
               
chr3:43896053-43895880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
137, 34
               

               
Conread position:
               
221-402
               

               
Cow position:
               
chr3:12637516-12637689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
161, 34
               

               
Conread position:
               
223-374
               

               
Cow position:
               
chr3:10115307-10115456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
224-394
               

               
Cow position:
               
chr3:3453589-3453759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
225-398
               

               
Cow position:
               
chr3:2016446-2016618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 10
               

               
Conread position:
               
226-361
               

               
Cow position:
               
chr3:61024011-61023875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
226-365
               

               
Cow position:
               
chr3:83199523-83199662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
226-393
               

               
Cow position:
               
chr3:77098811-77098648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
226-398
               

               
Cow position:
               
chr3:62186163-62186339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
226-398
               

               
Cow position:
               
chr3:78071779-78071611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
226-401
               

               
Cow position:
               
chr3:40958115-40957942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
226-401
               

               
Cow position:
               
chr3:68624229-68624403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
226-402
               

               
Cow position:
               
chr3:59317714-59317887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
226-403
               

               
Cow position:
               
chr3:35624533-35624355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
228-379
               

               
Cow position:
               
chr3:67942521-67942368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
228-394
               

               
Cow position:
               
chr3:83455136-83454974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 5
               

               
Conread position:
               
229-368
               

               
Cow position:
               
chr3:17039628-17039769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
229-374
               

               
Cow position:
               
chr3:39996872-39996732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
131, 5
               

               
Conread position:
               
229-379
               

               
Cow position:
               
chr3:29234665-29234513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 5
               

               
Conread position:
               
229-394
               

               
Cow position:
               
chr3:55106133-55105969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
229-400
               

               
Cow position:
               
chr3:79398158-79398330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 5
               

               
Conread position:
               
229-402
               

               
Cow position:
               
chr3:27246943-27246782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
229-408
               

               
Cow position:
               
chr3:12899924-12899754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
131, 5
               

               
Conread position:
               
231-366
               

               
Cow position:
               
chr3:2636966-2637095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
231-401
               

               
Cow position:
               
chr3:19641075-19641249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
232-379
               

               
Cow position:
               
chr3:10591486-10591348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
234-366
               

               
Cow position:
               
chr3:53552960-53552834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
234-392
               

               
Cow position:
               
chr3:621454-621616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
234-393
               

               
Cow position:
               
chr3:37641346-37641502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
234-393
               

               
Cow position:
               
chr3:42589118-42589275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
234-401
               

               
Cow position:
               
chr3:49787578-49787740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
234-402
               

               
Cow position:
               
chr3:14211963-14211799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
126, 24
               

               
Conread position:
               
235-393
               

               
Cow position:
               
chr3:635198-635354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
235-397
               

               
Cow position:
               
chr3:46259731-46259894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
235-402
               

               
Cow position:
               
chr3:22903732-22903572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
235-403
               

               
Cow position:
               
chr3:68565842-68565998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
236-397
               

               
Cow position:
               
chr3:83325234-83325387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
239-396
               

               
Cow position:
               
chr3:73701532-73701677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
239-396
               

               
Cow position:
               
chr3:75907936-75908090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
239-397
               

               
Cow position:
               
chr3:31896932-31896773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
239-398
               

               
Cow position:
               
chr3:58486358-58486198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
245-402
               

               
Cow position:
               
chr3:24370428-24370576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
259-396
               

               
Cow position:
               
chr3:39967448-39967317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-398
               

               
Cow position:
               
chr3:53249529-53249667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
259-404
               

               
Cow position:
               
chr3:25289885-25290031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 120
               

               
Conread position:
               
261-400
               

               
Cow position:
               
chr3:8540550-8540690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
261-400
               

               
Cow position:
               
chr3:42355707-42355850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
47, 119
               

               
Conread position:
               
266-398
               

               
Cow position:
               
chr3:43091139-43091271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
270-374
               

               
Cow position:
               
chr3:3877343-3877237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
272-401
               

               
Cow position:
               
chr3:49369665-49369793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 44
               
Show alignments to all cow chromosomes.