Cow genome map

Conread name: rfty538b_l16.y1

Conread position: 347-546
Cow position: chr1:96947539-96947740 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 50, 36

Conread position: 397-545
Cow position: chr1:48769934-48769780 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 398-486
Cow position: chr1:102622916-102622828 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 80
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 399-546
Cow position: chr1:24132934-24133083 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 401-550
Cow position: chr1:97090453-97090299 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 66, 0

Conread position: 402-546
Cow position: chr1:30136228-30136375 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 65, 95

Conread position: 402-548
Cow position: chr1:91023341-91023491 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 403-545
Cow position: chr1:41056804-41056656 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 403-546
Cow position: chr1:57575639-57575787 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 403-546
Cow position: chr1:62964391-62964242 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 403-549
Cow position: chr1:68855289-68855139 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 64, 14

Conread position: 404-541
Cow position: chr1:25383792-25383651 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 63, 117

Conread position: 404-543
Cow position: chr1:79146695-79146836 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 82, 133

Conread position: 404-545
Cow position: chr1:53458819-53458676 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 121
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 63, 0

Conread position: 404-546
Cow position: chr1:37321878-37322021 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 77

Conread position: 404-546
Cow position: chr1:81477744-81477892 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 404-548
Cow position: chr1:816288-816435 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 126
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 63, 0

Conread position: 404-548
Cow position: chr1:6078015-6077875 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 84

Conread position: 404-548
Cow position: chr1:75744986-75744836 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 405-525
Cow position: chr1:83783807-83783932 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 405-544
Cow position: chr1:67654197-67654341 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 405-546
Cow position: chr1:41027197-41027052 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 405-547
Cow position: chr1:48214035-48214179 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 405-547
Cow position: chr1:78811161-78811015 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 125

Conread position: 405-548
Cow position: chr1:41047180-41047327 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 29

Conread position: 405-548
Cow position: chr1:56225592-56225443 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 125
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 0

Conread position: 405-549
Cow position: chr1:3965956-3965810 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 406-537
Cow position: chr1:759296-759432 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-539
Cow position: chr1:45315514-45315652 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 406-541
Cow position: chr1:47233356-47233496 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 406-542
Cow position: chr1:87197942-87197801 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 406-544
Cow position: chr1:7023243-7023100 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 406-544
Cow position: chr1:89341858-89342007 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-544
Cow position: chr1:91874795-91874933 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 76, 58

Conread position: 406-545
Cow position: chr1:48206414-48206555 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 83

Conread position: 406-545
Cow position: chr1:50930857-50930997 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 102

Conread position: 406-545
Cow position: chr1:54267817-54267959 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 406-545
Cow position: chr1:81568906-81569050 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 406-545
Cow position: chr1:90621383-90621528 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 406-546
Cow position: chr1:4581208-4581353 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr1:67688461-67688605 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr1:77232456-77232601 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr1:78857207-78857352 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr1:79004093-79003953 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 79, 43

Conread position: 406-546
Cow position: chr1:81481260-81481405 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 406-546
Cow position: chr1:81613511-81613366 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr1:81913033-81913174 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 406-546
Cow position: chr1:84255889-84255744 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 406-546
Cow position: chr1:89388466-89388317 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 406-547
Cow position: chr1:71253434-71253577 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-547
Cow position: chr1:89449022-89448876 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 406-548
Cow position: chr1:61741846-61741992 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 406-548
Cow position: chr1:93044139-93043997 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 80

Conread position: 406-549
Cow position: chr1:10716618-10716471 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 119

Conread position: 406-550
Cow position: chr1:43388930-43389074 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 56, 79

Conread position: 406-552
Cow position: chr1:93590464-93590615 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 407-532
Cow position: chr1:10421827-10421699 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 407-541
Cow position: chr1:46143341-46143479 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 407-545
Cow position: chr1:83072562-83072419 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 407-545
Cow position: chr1:85647661-85647802 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 31

Conread position: 407-545
Cow position: chr1:86110623-86110759 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 72

Conread position: 407-546
Cow position: chr1:81290627-81290484 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 407-546
Cow position: chr1:84811818-84811962 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 407-547
Cow position: chr1:44125517-44125660 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 407-548
Cow position: chr1:82513234-82513379 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 13

Conread position: 408-539
Cow position: chr1:89509801-89509937 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 408-540
Cow position: chr1:92197575-92197438 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 408-544
Cow position: chr1:3166956-3167094 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 62, 96

Conread position: 408-547
Cow position: chr1:72304269-72304412 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 59, 29

Conread position: 408-548
Cow position: chr1:70538731-70538586 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 408-549
Cow position: chr1:85162427-85162574 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 409-531
Cow position: chr1:41138025-41138152 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 409-540
Cow position: chr1:52039755-52039621 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 409-542
Cow position: chr1:31855128-31855266 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 409-544
Cow position: chr1:55753097-55753236 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 55, 103

Conread position: 409-544
Cow position: chr1:89350084-89349944 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 409-545
Cow position: chr1:19962169-19962030 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 409-545
Cow position: chr1:53398094-53397953 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 409-546
Cow position: chr1:65028651-65028511 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 16

Conread position: 409-548
Cow position: chr1:95072451-95072306 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 409-549
Cow position: chr1:22827277-22827130 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 410-544
Cow position: chr1:43505647-43505508 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 410-545
Cow position: chr1:42887159-42887299 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 410-545
Cow position: chr1:73960818-73960681 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 71, 50

Conread position: 410-545
Cow position: chr1:83582815-83582955 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 410-547
Cow position: chr1:17196509-17196651 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 410-549
Cow position: chr1:78066419-78066562 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 54, 128

Conread position: 412-546
Cow position: chr1:78097043-78096904 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 414-528
Cow position: chr1:99605073-99605192 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 414-547
Cow position: chr1:80442858-80442719 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 414-548
Cow position: chr1:57091092-57090952 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 117
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 415-545
Cow position: chr1:4414095-4414227 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 79

Conread position: 415-545
Cow position: chr1:92590304-92590175 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 52, 15

Conread position: 415-546
Cow position: chr1:27959438-27959573 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 415-548
Cow position: chr1:19481969-19482106 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 52, 11

Conread position: 417-545
Cow position: chr1:12978793-12978660 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 417-550
Cow position: chr1:43286456-43286319 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 50, 14

Conread position: 420-545
Cow position: chr1:82556304-82556431 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.