Cow genome map

Conread name: rfty538b_l16.y1

Conread position: 347-546
Cow position: chr11:47545288-47545088 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 67, 34

Conread position: 377-544
Cow position: chr11:42296492-42296664 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 384-548
Cow position: chr11:32690849-32691016 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 153

Conread position: 387-543
Cow position: chr11:36328913-36329078 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 387-545
Cow position: chr11:20205734-20205897 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 80, 0

Conread position: 394-544
Cow position: chr11:69652673-69652825 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 73, 21

Conread position: 396-547
Cow position: chr11:22499257-22499411 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 397-549
Cow position: chr11:49872780-49872934 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 70, 0

Conread position: 399-544
Cow position: chr11:17083204-17083354 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 68, 0

Conread position: 399-545
Cow position: chr11:64089992-64090143 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 68, 22

Conread position: 399-546
Cow position: chr11:53279608-53279758 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 94

Conread position: 400-548
Cow position: chr11:10363282-10363436 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 37

Conread position: 400-563
Cow position: chr11:15382398-15382567 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 401-537
Cow position: chr11:30894900-30895040 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 138

Conread position: 403-542
Cow position: chr11:8437592-8437734 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 132

Conread position: 403-545
Cow position: chr11:52297119-52297264 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 124
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 123

Conread position: 403-546
Cow position: chr11:33409160-33409308 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 403-546
Cow position: chr11:53553318-53553173 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 35

Conread position: 403-548
Cow position: chr11:35153723-35153872 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 64, 23

Conread position: 404-530
Cow position: chr11:71022101-71021970 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 404-548
Cow position: chr11:48248115-48248264 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 63, 0

Conread position: 405-543
Cow position: chr11:45435180-45435036 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 405-544
Cow position: chr11:897773-897629 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 405-545
Cow position: chr11:27404975-27405115 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 405-546
Cow position: chr11:17721702-17721848 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 62, 0

Conread position: 405-546
Cow position: chr11:73924462-73924609 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 405-546
Cow position: chr11:80923224-80923367 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 62, 87

Conread position: 405-555
Cow position: chr11:47882903-47882746 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-542
Cow position: chr11:39060504-39060644 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 66, 44

Conread position: 406-542
Cow position: chr11:46922786-46922928 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 406-543
Cow position: chr11:20761941-20761804 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 406-544
Cow position: chr11:28644186-28644043 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-544
Cow position: chr11:39499456-39499312 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 406-545
Cow position: chr11:27248589-27248448 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-545
Cow position: chr11:41293719-41293863 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 406-545
Cow position: chr11:44032110-44031960 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-545
Cow position: chr11:48296129-48295988 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 86

Conread position: 406-545
Cow position: chr11:71390467-71390606 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 47

Conread position: 406-546
Cow position: chr11:2907430-2907569 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 406-546
Cow position: chr11:3393111-3393255 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 406-546
Cow position: chr11:29960394-29960252 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr11:30830515-30830660 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr11:35213069-35213214 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr11:40608496-40608640 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr11:69076009-69075865 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 406-546
Cow position: chr11:79018960-79019105 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr11:80564391-80564247 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 61, 22

Conread position: 406-548
Cow position: chr11:62150795-62150939 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 406-548
Cow position: chr11:62812851-62812998 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 406-548
Cow position: chr11:63998993-63999136 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 61, 82

Conread position: 406-548
Cow position: chr11:77319513-77319366 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-549
Cow position: chr11:27747022-27746875 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 139

Conread position: 406-549
Cow position: chr11:34646688-34646540 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 406-549
Cow position: chr11:83043264-83043412 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 406-564
Cow position: chr11:21885931-21885767 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 407-546
Cow position: chr11:16342131-16342275 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 407-546
Cow position: chr11:44222983-44222843 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 79

Conread position: 407-546
Cow position: chr11:44636656-44636801 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 407-547
Cow position: chr11:35803235-35803088 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 407-547
Cow position: chr11:42159959-42160102 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 407-549
Cow position: chr11:65767296-65767150 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 127
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 60, 10

Conread position: 408-546
Cow position: chr11:23128444-23128586 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 10

Conread position: 408-548
Cow position: chr11:18910786-18910926 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 135, 68

Conread position: 409-544
Cow position: chr11:69119389-69119249 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 409-545
Cow position: chr11:1932394-1932537 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 409-545
Cow position: chr11:11232360-11232498 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 409-545
Cow position: chr11:15285519-15285660 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 409-545
Cow position: chr11:18447396-18447537 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 409-546
Cow position: chr11:47772294-47772436 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 409-546
Cow position: chr11:48272296-48272154 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 409-546
Cow position: chr11:62789226-62789084 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 409-546
Cow position: chr11:72884501-72884640 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 409-550
Cow position: chr11:62239840-62239695 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 58, 117

Conread position: 410-546
Cow position: chr11:51729381-51729240 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 410-546
Cow position: chr11:62663140-62663278 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 82

Conread position: 410-549
Cow position: chr11:66424784-66424929 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 36

Conread position: 411-544
Cow position: chr11:64406322-64406184 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 411-546
Cow position: chr11:25119839-25119977 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 15

Conread position: 414-548
Cow position: chr11:44036810-44036675 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 53, 78

Conread position: 414-549
Cow position: chr11:29699609-29699749 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 414-549
Cow position: chr11:33341054-33341194 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 414-550
Cow position: chr11:65157317-65157459 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 415-543
Cow position: chr11:55494769-55494636 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 415-544
Cow position: chr11:28168333-28168466 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 128

Conread position: 415-544
Cow position: chr11:35873913-35874047 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 415-546
Cow position: chr11:18851997-18851862 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 415-546
Cow position: chr11:47899358-47899222 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 415-546
Cow position: chr11:50152724-50152860 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 415-546
Cow position: chr11:63469965-63469829 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 415-554
Cow position: chr11:18915116-18914969 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 416-559
Cow position: chr11:76822000-76822147 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 73

Conread position: 417-545
Cow position: chr11:83032768-83032635 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 417-548
Cow position: chr11:81162345-81162482 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 418-546
Cow position: chr11:30484006-30483873 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 438-544
Cow position: chr11:24937732-24937621 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.