Cow genome map
| Conread name: | rfty538b_l16.y1 |
| Conread position: | 377-547 |
| Cow position: | chr12:17031722-17031548 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 387-541 |
| Cow position: | chr12:27357484-27357326 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 130 |
| Conread position: | 402-545 |
| Cow position: | chr12:25917197-25917339 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 402-545 |
| Cow position: | chr12:39465661-39465513 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 403-541 |
| Cow position: | chr12:36261771-36261627 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 404-547 |
| Cow position: | chr12:19274319-19274465 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 405-546 |
| Cow position: | chr12:6485134-6485277 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 405-546 |
| Cow position: | chr12:12232960-12232816 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 405-546 |
| Cow position: | chr12:37169867-37170013 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 405-547 |
| Cow position: | chr12:42879772-42879626 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 406-530 |
| Cow position: | chr12:15122404-15122273 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 406-535 |
| Cow position: | chr12:1766987-1766856 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 86 |
| Conread position: | 406-542 |
| Cow position: | chr12:7884603-7884744 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-542 |
| Cow position: | chr12:17001336-17001195 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 406-543 |
| Cow position: | chr12:6410656-6410799 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-544 |
| Cow position: | chr12:25177520-25177661 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 94 |
| Conread position: | 406-544 |
| Cow position: | chr12:37514204-37514346 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 406-544 |
| Cow position: | chr12:45092524-45092381 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 406-546 |
| Cow position: | chr12:5631804-5631946 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-546 |
| Cow position: | chr12:17252121-17252265 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-546 |
| Cow position: | chr12:17269880-17269735 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 406-546 |
| Cow position: | chr12:18123747-18123602 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 406-546 |
| Cow position: | chr12:19261273-19261128 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 406-546 |
| Cow position: | chr12:26151382-26151527 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 406-546 |
| Cow position: | chr12:27037372-27037517 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-548 |
| Cow position: | chr12:37770946-37770808 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 407-544 |
| Cow position: | chr12:15260839-15260698 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 407-544 |
| Cow position: | chr12:16670343-16670202 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 407-546 |
| Cow position: | chr12:25805055-25805196 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 54, 108 |
| Conread position: | 407-549 |
| Cow position: | chr12:18020934-18020788 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 60, 87 |
| Conread position: | 408-546 |
| Cow position: | chr12:17879226-17879368 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 408-546 |
| Cow position: | chr12:33319592-33319733 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 408-548 |
| Cow position: | chr12:24032572-24032427 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 409-541 |
| Cow position: | chr12:44202912-44203046 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 409-544 |
| Cow position: | chr12:30210558-30210418 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 409-545 |
| Cow position: | chr12:19507712-19507571 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 409-545 |
| Cow position: | chr12:33948979-33948838 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 409-546 |
| Cow position: | chr12:19691159-19691298 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 409-548 |
| Cow position: | chr12:15703423-15703566 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 409-548 |
| Cow position: | chr12:29770504-29770641 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 410-544 |
| Cow position: | chr12:20776850-20776986 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 410-546 |
| Cow position: | chr12:26777117-26777256 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 410-547 |
| Cow position: | chr12:45820292-45820434 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 410-548 |
| Cow position: | chr12:5906130-5905986 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 411-549 |
| Cow position: | chr12:19502355-19502498 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 414-544 |
| Cow position: | chr12:15641037-15641173 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 414-547 |
| Cow position: | chr12:30819314-30819175 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 414-548 |
| Cow position: | chr12:6488923-6489058 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 415-542 |
| Cow position: | chr12:32715113-32714983 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 415-546 |
| Cow position: | chr12:30170737-30170602 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 417-547 |
| Cow position: | chr12:18577907-18577771 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 421-541 |
| Cow position: | chr12:18518736-18518611 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 434-549 |
| Cow position: | chr12:34673290-34673410 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.