Cow genome map
| Conread name: | rfty538b_l16.y1 |
| Conread position: | 350-545 |
| Cow position: | chr17:9911968-9911773 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 117, 31 |
| Conread position: | 390-543 |
| Cow position: | chr17:18847984-18848143 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 396-546 |
| Cow position: | chr17:11306376-11306221 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 398-545 |
| Cow position: | chr17:12591339-12591182 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 401-586 |
| Cow position: | chr17:17035111-17034917 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 180 |
| Conread position: | 402-546 |
| Cow position: | chr17:35338760-35338908 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 139 |
| Conread position: | 403-548 |
| Cow position: | chr17:29084334-29084184 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 403-549 |
| Cow position: | chr17:20022354-20022505 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 403-549 |
| Cow position: | chr17:21472029-21472170 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 404-538 |
| Cow position: | chr17:20392307-20392171 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 404-544 |
| Cow position: | chr17:33154996-33155140 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 109 |
| Conread position: | 404-545 |
| Cow position: | chr17:11831956-11832102 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 404-546 |
| Cow position: | chr17:5422910-5423057 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 404-546 |
| Cow position: | chr17:29995277-29995424 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 404-546 |
| Cow position: | chr17:43315130-43315274 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 404-549 |
| Cow position: | chr17:3388982-3388834 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 405-537 |
| Cow position: | chr17:11478927-11478790 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 405-539 |
| Cow position: | chr17:21003672-21003807 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 405-545 |
| Cow position: | chr17:30213043-30212903 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 405-545 |
| Cow position: | chr17:30728662-30728518 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 138 |
| Conread position: | 405-546 |
| Cow position: | chr17:7810597-7810743 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 405-546 |
| Cow position: | chr17:18108930-18109072 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 405-546 |
| Cow position: | chr17:25901358-25901212 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 405-546 |
| Cow position: | chr17:32471624-32471769 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 405-548 |
| Cow position: | chr17:35126862-35126719 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 406-529 |
| Cow position: | chr17:9713185-9713313 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 406-530 |
| Cow position: | chr17:946514-946385 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 406-537 |
| Cow position: | chr17:1634335-1634471 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-542 |
| Cow position: | chr17:17406292-17406151 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 406-543 |
| Cow position: | chr17:20990033-20990177 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-543 |
| Cow position: | chr17:21325489-21325347 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-543 |
| Cow position: | chr17:24587781-24587639 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-544 |
| Cow position: | chr17:6318710-6318852 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 126 |
| Conread position: | 406-544 |
| Cow position: | chr17:12325608-12325751 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-544 |
| Cow position: | chr17:29157573-29157433 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 406-545 |
| Cow position: | chr17:1063329-1063189 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 406-545 |
| Cow position: | chr17:18495363-18495503 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 55, 86 |
| Conread position: | 406-545 |
| Cow position: | chr17:21039714-21039570 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-545 |
| Cow position: | chr17:34790907-34791054 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 61, 95 |
| Conread position: | 406-546 |
| Cow position: | chr17:908897-908753 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 124 |
| Conread position: | 406-546 |
| Cow position: | chr17:5768061-5767919 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 406-546 |
| Cow position: | chr17:11664425-11664573 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 406-546 |
| Cow position: | chr17:22016932-22017072 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 406-546 |
| Cow position: | chr17:23101062-23101207 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 406-546 |
| Cow position: | chr17:24163193-24163052 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 406-546 |
| Cow position: | chr17:25800726-25800870 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 406-546 |
| Cow position: | chr17:32418959-32419104 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-546 |
| Cow position: | chr17:32989633-32989489 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 406-546 |
| Cow position: | chr17:32993467-32993611 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 406-546 |
| Cow position: | chr17:33793320-33793178 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-546 |
| Cow position: | chr17:39606587-39606442 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 406-546 |
| Cow position: | chr17:40276897-40276752 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 406-548 |
| Cow position: | chr17:40331921-40331778 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 406-550 |
| Cow position: | chr17:21114797-21114946 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 407-542 |
| Cow position: | chr17:1410080-1410222 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 407-544 |
| Cow position: | chr17:9824825-9824683 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 407-545 |
| Cow position: | chr17:32138268-32138411 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 407-546 |
| Cow position: | chr17:30713499-30713357 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 407-546 |
| Cow position: | chr17:32332935-32333080 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 407-546 |
| Cow position: | chr17:40639100-40638959 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 408-544 |
| Cow position: | chr17:31037222-31037363 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 408-546 |
| Cow position: | chr17:39736329-39736189 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 408-548 |
| Cow position: | chr17:265824-265681 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 409-538 |
| Cow position: | chr17:15340598-15340734 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 409-544 |
| Cow position: | chr17:24554150-24554010 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 409-545 |
| Cow position: | chr17:3153421-3153561 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 409-545 |
| Cow position: | chr17:11912349-11912490 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 409-546 |
| Cow position: | chr17:25473126-25473267 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 409-546 |
| Cow position: | chr17:45296563-45296427 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 409-548 |
| Cow position: | chr17:40406599-40406455 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 7, 121 |
| Conread position: | 409-549 |
| Cow position: | chr17:33164664-33164805 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 102 |
| Conread position: | 410-546 |
| Cow position: | chr17:12536312-12536453 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 410-546 |
| Cow position: | chr17:15102741-15102882 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 410-546 |
| Cow position: | chr17:25612243-25612102 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 411-546 |
| Cow position: | chr17:33933591-33933733 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 412-545 |
| Cow position: | chr17:11215744-11215875 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 413-543 |
| Cow position: | chr17:24824392-24824257 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 415-544 |
| Cow position: | chr17:9932152-9932286 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 415-544 |
| Cow position: | chr17:27142893-27142759 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 127 |
| Conread position: | 415-546 |
| Cow position: | chr17:1040892-1040756 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 415-549 |
| Cow position: | chr17:21243642-21243778 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 423-542 |
| Cow position: | chr17:11368710-11368833 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 427-546 |
| Cow position: | chr17:20090501-20090625 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.