Cow genome map

Conread name: rfty538b_l16.y1

Conread position: 397-546
Cow position: chr5:43403054-43402902 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 29

Conread position: 397-546
Cow position: chr5:64321898-64321751 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 70, 18

Conread position: 397-547
Cow position: chr5:50821934-50821780 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 64, 138

Conread position: 399-545
Cow position: chr5:56517253-56517102 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 101

Conread position: 400-544
Cow position: chr5:20422045-20422190 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 92

Conread position: 400-546
Cow position: chr5:41545745-41545896 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 400-546
Cow position: chr5:57686589-57686740 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 402-545
Cow position: chr5:68719013-68718868 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 404-545
Cow position: chr5:24996079-24996225 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 66, 0

Conread position: 404-545
Cow position: chr5:59626828-59626973 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 33

Conread position: 404-546
Cow position: chr5:20288118-20288266 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 404-546
Cow position: chr5:35685079-35684935 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 404-546
Cow position: chr5:35982593-35982741 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 404-546
Cow position: chr5:60599061-60599208 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 12, 31

Conread position: 404-549
Cow position: chr5:17554889-17555038 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 38

Conread position: 404-551
Cow position: chr5:51298569-51298721 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 127
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 63, 90

Conread position: 405-543
Cow position: chr5:65753003-65752860 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 22

Conread position: 405-545
Cow position: chr5:14314671-14314526 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 405-545
Cow position: chr5:70271010-70270864 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 405-546
Cow position: chr5:72006347-72006493 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 406-517
Cow position: chr5:34288110-34288224 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 406-539
Cow position: chr5:22795356-22795221 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 406-541
Cow position: chr5:38833263-38833125 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 406-542
Cow position: chr5:44446723-44446865 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-543
Cow position: chr5:4166782-4166642 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 63, 42

Conread position: 406-543
Cow position: chr5:40109634-40109493 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 59, 69

Conread position: 406-544
Cow position: chr5:9233846-9233990 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 406-544
Cow position: chr5:25035116-25035255 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 86

Conread position: 406-544
Cow position: chr5:45397711-45397572 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 55, 85

Conread position: 406-544
Cow position: chr5:56338879-56339022 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-544
Cow position: chr5:62378922-62378780 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 86

Conread position: 406-545
Cow position: chr5:9170442-9170583 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 75, 15

Conread position: 406-545
Cow position: chr5:17104992-17104851 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 61, 86

Conread position: 406-545
Cow position: chr5:34914911-34915055 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 406-545
Cow position: chr5:45126794-45126649 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 406-545
Cow position: chr5:67118562-67118418 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr5:12322663-12322807 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 21, 88

Conread position: 406-546
Cow position: chr5:41165230-41165085 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr5:43929594-43929738 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr5:44028167-44028306 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 19

Conread position: 406-546
Cow position: chr5:46512627-46512771 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr5:49341907-49342052 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chr5:55232671-55232814 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 406-546
Cow position: chr5:64139702-64139557 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-547
Cow position: chr5:5110927-5111078 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 52, 94

Conread position: 406-549
Cow position: chr5:69731642-69731500 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 110

Conread position: 407-541
Cow position: chr5:21617599-21617460 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 407-542
Cow position: chr5:14920789-14920928 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 60, 125

Conread position: 407-543
Cow position: chr5:42050692-42050553 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 14

Conread position: 407-543
Cow position: chr5:66257777-66257639 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 85

Conread position: 407-544
Cow position: chr5:26548999-26549141 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 407-545
Cow position: chr5:9893982-9894125 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 407-546
Cow position: chr5:50824733-50824589 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 407-546
Cow position: chr5:56014872-56014728 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 407-546
Cow position: chr5:69383395-69383252 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 19

Conread position: 407-546
Cow position: chr5:70951748-70951883 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 89, 60

Conread position: 407-547
Cow position: chr5:17086880-17087024 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 67

Conread position: 408-542
Cow position: chr5:4710012-4710150 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 408-546
Cow position: chr5:63150029-63150171 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 408-549
Cow position: chr5:46540916-46541061 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 122
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 59, 0

Conread position: 409-543
Cow position: chr5:35826740-35826602 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 12

Conread position: 409-544
Cow position: chr5:7193555-7193418 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 58, 24

Conread position: 409-544
Cow position: chr5:60523871-60523732 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 58, 83

Conread position: 409-545
Cow position: chr5:21829006-21828866 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 409-545
Cow position: chr5:34562156-34562014 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 58, 96

Conread position: 409-546
Cow position: chr5:30276829-30276687 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 409-546
Cow position: chr5:30629018-30629162 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 22

Conread position: 409-546
Cow position: chr5:60016304-60016165 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 409-546
Cow position: chr5:64026880-64027022 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 410-532
Cow position: chr5:38169033-38168905 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 410-535
Cow position: chr5:65136402-65136275 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 74

Conread position: 410-546
Cow position: chr5:6045434-6045291 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 410-546
Cow position: chr5:56028403-56028542 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 412-546
Cow position: chr5:56334376-56334511 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 25

Conread position: 412-547
Cow position: chr5:67244054-67243917 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 80

Conread position: 414-545
Cow position: chr5:57626922-57626794 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 109, 72

Conread position: 414-546
Cow position: chr5:53835850-53835711 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 415-546
Cow position: chr5:6286300-6286436 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 75

Conread position: 415-546
Cow position: chr5:29903390-29903526 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 415-546
Cow position: chr5:30303024-30302893 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 94

Conread position: 415-546
Cow position: chr5:57074198-57074334 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 415-546
Cow position: chr5:61102849-61102712 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 101

Conread position: 415-548
Cow position: chr5:45804193-45804054 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 32

Conread position: 415-549
Cow position: chr5:63992039-63992178 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 417-544
Cow position: chr5:41403443-41403573 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 419-546
Cow position: chr5:24069519-24069387 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 0

Show alignments to all cow chromosomes.