Cow genome map

Conread name: rfty538b_l16.y1

Conread position: 374-540
Cow position: chrX:12437097-12437266 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 16, 8

Conread position: 399-546
Cow position: chrX:38642399-38642247 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 401-543
Cow position: chrX:35273514-35273364 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 402-545
Cow position: chrX:47061543-47061395 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 402-546
Cow position: chrX:12082177-12082325 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 402-546
Cow position: chrX:29230147-29229997 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 402-549
Cow position: chrX:24749233-24749082 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 127
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 14, 0

Conread position: 403-546
Cow position: chrX:30337812-30337954 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 68, 115

Conread position: 403-546
Cow position: chrX:44759794-44759943 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 14, 38

Conread position: 403-548
Cow position: chrX:19394701-19394549 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 403-549
Cow position: chrX:40557533-40557684 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 64, 0

Conread position: 404-532
Cow position: chrX:17795126-17794993 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 404-546
Cow position: chrX:27306599-27306452 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 123
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 58, 0

Conread position: 404-550
Cow position: chrX:38853343-38853192 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 128
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 405-516
Cow position: chrX:40046435-40046547 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 16

Conread position: 405-530
Cow position: chrX:35387783-35387910 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 405-536
Cow position: chrX:41862507-41862372 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 102

Conread position: 405-545
Cow position: chrX:38066310-38066456 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 405-546
Cow position: chrX:1466306-1466160 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 405-546
Cow position: chrX:33493920-33493777 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 62, 0

Conread position: 405-546
Cow position: chrX:37780965-37781111 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 406-525
Cow position: chrX:34508687-34508563 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-528
Cow position: chrX:41164754-41164630 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 58, 86

Conread position: 406-538
Cow position: chrX:33855077-33855214 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 406-542
Cow position: chrX:14275600-14275741 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 406-543
Cow position: chrX:16836146-16836285 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 61, 86

Conread position: 406-543
Cow position: chrX:42469798-42469941 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 406-544
Cow position: chrX:4152888-4153031 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-544
Cow position: chrX:26881421-26881565 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 406-544
Cow position: chrX:27668815-27668958 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 406-544
Cow position: chrX:29050391-29050250 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 406-544
Cow position: chrX:29501741-29501881 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 113

Conread position: 406-544
Cow position: chrX:40035297-40035441 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-544
Cow position: chrX:42160766-42160627 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 61, 86

Conread position: 406-544
Cow position: chrX:42380969-42381112 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 406-545
Cow position: chrX:6599639-6599783 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chrX:878237-878382 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chrX:7695891-7695749 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 61, 20

Conread position: 406-546
Cow position: chrX:9201691-9201546 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chrX:11656224-11656079 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chrX:17726119-17725973 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 406-546
Cow position: chrX:22392842-22392986 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 20

Conread position: 406-546
Cow position: chrX:27145747-27145602 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chrX:31436617-31436472 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 406-546
Cow position: chrX:38587700-38587845 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 406-546
Cow position: chrX:40531900-40532045 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 406-547
Cow position: chrX:6414184-6414043 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 136, 67

Conread position: 406-547
Cow position: chrX:31312172-31312026 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 406-547
Cow position: chrX:34411989-34411843 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 406-547
Cow position: chrX:43115293-43115148 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 406-548
Cow position: chrX:8869258-8869407 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 406-548
Cow position: chrX:41526386-41526526 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 81

Conread position: 406-549
Cow position: chrX:16984783-16984636 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 61, 34

Conread position: 407-538
Cow position: chrX:36068158-36068021 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 407-543
Cow position: chrX:4615869-4616010 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 30

Conread position: 407-544
Cow position: chrX:22115175-22115317 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 407-545
Cow position: chrX:21986149-21986291 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 60, 0

Conread position: 407-545
Cow position: chrX:35985960-35985819 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 28

Conread position: 407-546
Cow position: chrX:5118356-5118504 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 407-564
Cow position: chrX:2936099-2935936 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 408-539
Cow position: chrX:38560700-38560564 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 115
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 408-544
Cow position: chrX:25328474-25328615 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 105

Conread position: 408-546
Cow position: chrX:13177335-13177481 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 408-546
Cow position: chrX:37986366-37986229 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 78, 65

Conread position: 409-542
Cow position: chrX:22074940-22074797 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 409-543
Cow position: chrX:12972824-12972682 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 409-544
Cow position: chrX:4467107-4466967 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 409-545
Cow position: chrX:42927684-42927826 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 409-546
Cow position: chrX:45429882-45430024 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 409-546
Cow position: chrX:46429679-46429821 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 409-549
Cow position: chrX:18272918-18273060 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 7, 19

Conread position: 409-551
Cow position: chrX:41871207-41871060 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 409-557
Cow position: chrX:34792173-34792324 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 11

Conread position: 410-546
Cow position: chrX:40685189-40685330 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 410-549
Cow position: chrX:41884273-41884417 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 412-546
Cow position: chrX:20584465-20584326 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 414-546
Cow position: chrX:27431783-27431920 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 415-545
Cow position: chrX:2523548-2523683 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 415-546
Cow position: chrX:618875-619004 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 36

Conread position: 415-549
Cow position: chrX:6544388-6544252 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 115
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 416-544
Cow position: chrX:11938801-11938935 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 5

Conread position: 417-540
Cow position: chrX:32942944-32943072 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 421-546
Cow position: chrX:19273578-19273709 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 421-548
Cow position: chrX:34532648-34532516 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 112
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 426-527
Cow position: chrX:7513610-7513505 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 436-548
Cow position: chrX:7509252-7509139 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 0

Show alignments to all cow chromosomes.