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Cow genome map

           
Conread name:
           
rgul0105_p8.y1
        

               
Conread position:
               
75-496
               

               
Cow position:
               
chr1:79164902-79165348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
205, 60
               

               
Conread position:
               
79-509
               

               
Cow position:
               
chr1:95101127-95100694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
79-510
               

               
Cow position:
               
chr1:8794-8352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
232, 79
               

               
Conread position:
               
80-315
               

               
Cow position:
               
chr1:57089503-57089735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 96
               

               
Conread position:
               
80-394
               

               
Cow position:
               
chr1:87197995-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
202, 47
               

               
Conread position:
               
80-430
               

               
Cow position:
               
chr1:33206699-33207064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 75
               

               
Conread position:
               
80-431
               

               
Cow position:
               
chr1:42398021-42398387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
191, 80
               

               
Conread position:
               
80-432
               

               
Cow position:
               
chr1:13810826-13810457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
80-442
               

               
Cow position:
               
chr1:5597037-5597400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
238, 82
               

               
Conread position:
               
80-444
               

               
Cow position:
               
chr1:72104029-72103643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 92
               

               
Conread position:
               
80-469
               

               
Cow position:
               
chr1:64803922-64804336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 102
               

               
Conread position:
               
80-480
               

               
Cow position:
               
chr1:7443157-7442745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
80-489
               

               
Cow position:
               
chr1:100450014-100450439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
101, 174
               

               
Conread position:
               
80-500
               

               
Cow position:
               
chr1:61885087-61884655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
80-500
               

               
Cow position:
               
chr1:65103804-65103375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
80-501
               

               
Cow position:
               
chr1:3324049-3323596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
80-501
               

               
Cow position:
               
chr1:63595876-63596321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
186, 80
               

               
Conread position:
               
80-507
               

               
Cow position:
               
chr1:54258744-54258300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 99
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr1:18936662-18937103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 33
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr1:23633752-23634170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 80
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr1:31934679-31934243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
214, 64
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr1:41182011-41181571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
206, 61
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr1:81228160-81228601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 48
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr1:81568854-81569306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
196, 66
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr1:82936429-82936852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 71
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr1:96964494-96964049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 101
               

               
Conread position:
               
80-512
               

               
Cow position:
               
chr1:22824084-22823665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
80-512
               

               
Cow position:
               
chr1:87888565-87888131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
81-510
               

               
Cow position:
               
chr1:52496947-52496506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 81
               

               
Conread position:
               
82-405
               

               
Cow position:
               
chr1:21561193-21560870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
82-464
               

               
Cow position:
               
chr1:70422480-70422077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
82-488
               

               
Cow position:
               
chr1:78857153-78857570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 105
               

               
Conread position:
               
82-510
               

               
Cow position:
               
chr1:1956161-1956600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
82-511
               

               
Cow position:
               
chr1:52435448-52434997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
105, 80
               

               
Conread position:
               
85-501
               

               
Cow position:
               
chr1:48581300-48580871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
95-503
               

               
Cow position:
               
chr1:52487818-52488221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 56
               

               
Conread position:
               
97-510
               

               
Cow position:
               
chr1:11913716-11914142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 84
               

               
Conread position:
               
98-444
               

               
Cow position:
               
chr1:86279574-86279211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
179, 103
               

               
Conread position:
               
104-510
               

               
Cow position:
               
chr1:76019546-76019950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
214, 30
               

               
Conread position:
               
136-510
               

               
Cow position:
               
chr1:89741890-89742282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
171, 15
               

               
Conread position:
               
158-512
               

               
Cow position:
               
chr1:44155349-44154990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
190-476
               

               
Cow position:
               
chr1:10655553-10655242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
193-511
               

               
Cow position:
               
chr1:79591166-79590829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 136
               

               
Conread position:
               
195-479
               

               
Cow position:
               
chr1:26729784-26729489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 88
               

               
Conread position:
               
200-427
               

               
Cow position:
               
chr1:63530619-63530394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 119
               

               
Conread position:
               
201-451
               

               
Cow position:
               
chr1:26178751-26179025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 100
               

               
Conread position:
               
202-468
               

               
Cow position:
               
chr1:7186847-7186560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
202-469
               

               
Cow position:
               
chr1:10942035-10942320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 198
               

               
Conread position:
               
202-469
               

               
Cow position:
               
chr1:10964351-10964066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 198
               

               
Conread position:
               
202-482
               

               
Cow position:
               
chr1:55230035-55229742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
202-486
               

               
Cow position:
               
chr1:51531810-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
202-490
               

               
Cow position:
               
chr1:42138917-42138615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 81
               

               
Conread position:
               
202-491
               

               
Cow position:
               
chr1:5023703-5023991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 95
               

               
Conread position:
               
202-491
               

               
Cow position:
               
chr1:5135651-5135942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
74, 58
               

               
Conread position:
               
202-498
               

               
Cow position:
               
chr1:84811880-84812192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
79, 160
               

               
Conread position:
               
202-500
               

               
Cow position:
               
chr1:37309460-37309764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
85, 264
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chr1:36998244-36997927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chr1:56229297-56228984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chr1:69264867-69264552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 39
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chr1:89350024-89349707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
202-511
               

               
Cow position:
               
chr1:61735376-61735710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
202-512
               

               
Cow position:
               
chr1:95215131-95215453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 114
               

               
Conread position:
               
203-397
               

               
Cow position:
               
chr1:83659220-83659430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
203-446
               

               
Cow position:
               
chr1:75142055-75141801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 87
               

               
Conread position:
               
203-511
               

               
Cow position:
               
chr1:100706184-100705860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
204-510
               

               
Cow position:
               
chr1:97761657-97761358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
263, 79
               

               
Conread position:
               
205-511
               

               
Cow position:
               
chr1:34159891-34159561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
206-505
               

               
Cow position:
               
chr1:13614678-13614984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
226-510
               

               
Cow position:
               
chr1:11772050-11772351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
226-510
               

               
Cow position:
               
chr1:20205065-20204755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
228-501
               

               
Cow position:
               
chr1:41252373-41252664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
228-509
               

               
Cow position:
               
chr1:53207672-53207964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
228-510
               

               
Cow position:
               
chr1:73561614-73561919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
86, 275
               

               
Conread position:
               
228-510
               

               
Cow position:
               
chr1:95017496-95017783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
228-512
               

               
Cow position:
               
chr1:30034566-30034274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 154
               

               
Conread position:
               
233-456
               

               
Cow position:
               
chr1:68996208-68995956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
233-510
               

               
Cow position:
               
chr1:94212250-94211964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
234-500
               

               
Cow position:
               
chr1:31347907-31348168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
240-459
               

               
Cow position:
               
chr1:98557763-98558002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
242-457
               

               
Cow position:
               
chr1:15628008-15627791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
133, 39
               

               
Conread position:
               
242-510
               

               
Cow position:
               
chr1:31341034-31341324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
243-510
               

               
Cow position:
               
chr1:68282810-68282524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
252-500
               

               
Cow position:
               
chr1:3661055-3661316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
61, 97
               

               
Conread position:
               
291-511
               

               
Cow position:
               
chr1:68276363-68276136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
62, 14
               

               
Conread position:
               
292-496
               

               
Cow position:
               
chr1:4291111-4290902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
296-474
               

               
Cow position:
               
chr1:100512547-100512362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
298-487
               

               
Cow position:
               
chr1:56477532-56477348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
298-497
               

               
Cow position:
               
chr1:1165551-1165343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr1:72034980-72035199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr1:22448642-22448855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr1:32631412-32631199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
302-480
               

               
Cow position:
               
chr1:44506909-44506728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
302-501
               

               
Cow position:
               
chr1:82337840-82338046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
302-510
               

               
Cow position:
               
chr1:53425116-53424922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
164, 15
               

               
Conread position:
               
303-427
               

               
Cow position:
               
chr1:89083050-89082921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
303-440
               

               
Cow position:
               
chr1:7450070-7449933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
303-510
               

               
Cow position:
               
chr1:21093032-21092821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
303-512
               

               
Cow position:
               
chr1:48444254-48444453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
308-496
               

               
Cow position:
               
chr1:97806723-97806536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
308-500
               

               
Cow position:
               
chr1:6941398-6941206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
308-500
               

               
Cow position:
               
chr1:6958811-6958619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
308-501
               

               
Cow position:
               
chr1:45535640-45535441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
308-501
               

               
Cow position:
               
chr1:84116333-84116141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
308-510
               

               
Cow position:
               
chr1:53520847-53520642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 192
               

               
Conread position:
               
309-489
               

               
Cow position:
               
chr1:55146736-55146552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
309-504
               

               
Cow position:
               
chr1:60707345-60707139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
309-509
               

               
Cow position:
               
chr1:8532280-8532483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
311-512
               

               
Cow position:
               
chr1:24201814-24202011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
315-510
               

               
Cow position:
               
chr1:43211699-43211508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
159, 5
               

               
Conread position:
               
318-443
               

               
Cow position:
               
chr1:99570539-99570667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
318-501
               

               
Cow position:
               
chr1:3340867-3340675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
318-501
               

               
Cow position:
               
chr1:98594504-98594307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
318-507
               

               
Cow position:
               
chr1:51394347-51394151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
318-510
               

               
Cow position:
               
chr1:31499554-31499357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
318-510
               

               
Cow position:
               
chr1:38381953-38382147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
319-491
               

               
Cow position:
               
chr1:3776687-3776865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
319-491
               

               
Cow position:
               
chr1:29901048-29901208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 30
               

               
Conread position:
               
319-501
               

               
Cow position:
               
chr1:22836323-22836141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
172, 50
               

               
Conread position:
               
319-501
               

               
Cow position:
               
chr1:95327224-95327414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
319-510
               

               
Cow position:
               
chr1:3752012-3752213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
319-510
               

               
Cow position:
               
chr1:15311794-15311598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
319-512
               

               
Cow position:
               
chr1:68845558-68845755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
320-425
               

               
Cow position:
               
chr1:3243862-3243754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
320-425
               

               
Cow position:
               
chr1:86578874-86578764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 30
               

               
Conread position:
               
320-433
               

               
Cow position:
               
chr1:83593879-83594000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
320-435
               

               
Cow position:
               
chr1:32001397-32001515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
320-439
               

               
Cow position:
               
chr1:51654335-51654212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
320-441
               

               
Cow position:
               
chr1:49753852-49753730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
320-442
               

               
Cow position:
               
chr1:43340688-43340824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
320-443
               

               
Cow position:
               
chr1:28563643-28563771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
320-448
               

               
Cow position:
               
chr1:98310992-98310854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
320-452
               

               
Cow position:
               
chr1:43872407-43872543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-458
               

               
Cow position:
               
chr1:53613271-53613410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
320-459
               

               
Cow position:
               
chr1:16962085-16962232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-460
               

               
Cow position:
               
chr1:45673633-45673492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
320-462
               

               
Cow position:
               
chr1:52956177-52956038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
320-463
               

               
Cow position:
               
chr1:34771580-34771726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
45, 31
               

               
Conread position:
               
320-463
               

               
Cow position:
               
chr1:49317572-49317735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-465
               

               
Cow position:
               
chr1:32013880-32013729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 78
               

               
Conread position:
               
320-467
               

               
Cow position:
               
chr1:78154800-78154951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
320-469
               

               
Cow position:
               
chr1:79278523-79278670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-470
               

               
Cow position:
               
chr1:31348516-31348670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
320-471
               

               
Cow position:
               
chr1:43358088-43358245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-472
               

               
Cow position:
               
chr1:6304939-6305098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
320-475
               

               
Cow position:
               
chr1:26201143-26200987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
320-475
               

               
Cow position:
               
chr1:28068273-28068113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
320-478
               

               
Cow position:
               
chr1:65638133-65637966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
320-481
               

               
Cow position:
               
chr1:31235003-31235175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-483
               

               
Cow position:
               
chr1:3962771-3962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
320-483
               

               
Cow position:
               
chr1:20002316-20002479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
151, 51
               

               
Conread position:
               
320-484
               

               
Cow position:
               
chr1:51445804-51445635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-485
               

               
Cow position:
               
chr1:84239189-84239352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
146, 31
               

               
Conread position:
               
320-486
               

               
Cow position:
               
chr1:4293979-4293818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
320-486
               

               
Cow position:
               
chr1:58419861-58419686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-488
               

               
Cow position:
               
chr1:57396006-57396177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
320-488
               

               
Cow position:
               
chr1:68951551-68951384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
320-488
               

               
Cow position:
               
chr1:89485500-89485343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 89
               

               
Conread position:
               
320-488
               

               
Cow position:
               
chr1:93528622-93528442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
320-488
               

               
Cow position:
               
chr1:96184094-96184256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
320-489
               

               
Cow position:
               
chr1:68619009-68619186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
320-490
               

               
Cow position:
               
chr1:50679359-50679536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-490
               

               
Cow position:
               
chr1:98708364-98708192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
320-491
               

               
Cow position:
               
chr1:11770366-11770544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-491
               

               
Cow position:
               
chr1:14379611-14379781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
320-491
               

               
Cow position:
               
chr1:56711695-56711869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
320-491
               

               
Cow position:
               
chr1:81363908-81363743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 88
               

               
Conread position:
               
320-493
               

               
Cow position:
               
chr1:75967355-75967183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-494
               

               
Cow position:
               
chr1:21835869-21835694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
66, 28
               

               
Conread position:
               
320-495
               

               
Cow position:
               
chr1:24655887-24655705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 142
               

               
Conread position:
               
320-495
               

               
Cow position:
               
chr1:88970983-88970808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chr1:33717152-33716965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chr1:42555187-42555014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chr1:100551893-100551714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
320-497
               

               
Cow position:
               
chr1:47008955-47008770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chr1:56748518-56748330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chr1:57635385-57635207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chr1:63905548-63905732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chr1:64251128-64251309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 30
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chr1:44125723-44125898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chr1:57297400-57297235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chr1:57639598-57639781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chr1:95050172-95050355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 153
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chr1:96078292-96078107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
320-506
               

               
Cow position:
               
chr1:33702043-33701853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
320-507
               

               
Cow position:
               
chr1:22628714-22628906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
320-507
               

               
Cow position:
               
chr1:39418197-39418385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 82
               

               
Conread position:
               
320-508
               

               
Cow position:
               
chr1:4374415-4374606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
320-508
               

               
Cow position:
               
chr1:15547394-15547201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
320-509
               

               
Cow position:
               
chr1:63434882-63435072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
320-509
               

               
Cow position:
               
chr1:99095286-99095096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
51, 93
               

               
Conread position:
               
320-509
               

               
Cow position:
               
chr1:99609292-99609098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
49, 188
               

               
Conread position:
               
320-509
               

               
Cow position:
               
chr1:102756505-102756690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:666289-666090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:732010-732195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
146, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:4589550-4589751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:5409690-5409884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
51, 65
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:8349391-8349579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:11873437-11873625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:12222680-12222875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:18196785-18196586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:20125537-20125341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
56, 187
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:22745548-22745357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 63
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:24235593-24235788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:24909164-24909361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 161
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:31548763-31548568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 141
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:33720043-33719844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:33811853-33811664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:34000836-34000635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:36613351-36613545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:45007394-45007196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:52329605-52329798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 173
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:53374355-53374165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:54199458-54199650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
31, 135
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:60032674-60032868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:71257554-71257753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:73757012-73756823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:78783475-78783276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:81859298-81859497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
36, 147
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:82504898-82504697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:82861705-82861503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:90640955-90640755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:90868517-90868708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:91142230-91142425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:95176863-95176665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:95687177-95687371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 144
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:98380649-98380847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chr1:101822577-101822766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chr1:26702283-26702471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chr1:31765463-31765666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
30, 158
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chr1:84282998-84282790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chr1:97755440-97755252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chr1:99637854-99638051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chr1:102647348-102647540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chr1:1802064-1801872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chr1:53622884-53622693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chr1:67290790-67290594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chr1:100400272-100400473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
321-469
               

               
Cow position:
               
chr1:78809803-78809655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
321-479
               

               
Cow position:
               
chr1:96635445-96635595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
144, 30
               

               
Conread position:
               
321-489
               

               
Cow position:
               
chr1:74013336-74013516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
321-510
               

               
Cow position:
               
chr1:69407292-69407096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
322-435
               

               
Cow position:
               
chr1:82443534-82443651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
322-488
               

               
Cow position:
               
chr1:102349832-102350006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
322-490
               

               
Cow position:
               
chr1:77891739-77891563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
322-510
               

               
Cow position:
               
chr1:11853763-11853960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
322-510
               

               
Cow position:
               
chr1:53495390-53495192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
322-510
               

               
Cow position:
               
chr1:55260507-55260700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
322-511
               

               
Cow position:
               
chr1:100770827-100771006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
322-512
               

               
Cow position:
               
chr1:69941045-69941240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
324-482
               

               
Cow position:
               
chr1:25281756-25281918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
324-510
               

               
Cow position:
               
chr1:5990833-5990644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
324-510
               

               
Cow position:
               
chr1:85596861-85596676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
325-475
               

               
Cow position:
               
chr1:51818859-51818706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
325-502
               

               
Cow position:
               
chr1:52506635-52506806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
326-456
               

               
Cow position:
               
chr1:74956103-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
326-495
               

               
Cow position:
               
chr1:72011891-72012058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
327-491
               

               
Cow position:
               
chr1:23116815-23116980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
327-500
               

               
Cow position:
               
chr1:94907135-94906969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
327-504
               

               
Cow position:
               
chr1:71779248-71779061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
327-506
               

               
Cow position:
               
chr1:88983232-88983413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
327-507
               

               
Cow position:
               
chr1:59278730-59278550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 119
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chr1:61351069-61350877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chr1:82958137-82958323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chr1:83048287-83048469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
327-512
               

               
Cow position:
               
chr1:16272495-16272688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
330-490
               

               
Cow position:
               
chr1:101973029-101973198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
331-510
               

               
Cow position:
               
chr1:75093412-75093224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
334-501
               

               
Cow position:
               
chr1:78794824-78794996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
338-469
               

               
Cow position:
               
chr1:64189406-64189274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
339-509
               

               
Cow position:
               
chr1:67577974-67577796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
359-511
               

               
Cow position:
               
chr1:98074167-98074019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               
Show alignments to all cow chromosomes.