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Cow genome map

           
Conread name:
           
rgul0105_p8.y1
        

               
Conread position:
               
79-429
               

               
Cow position:
               
chrX:25207662-25208015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
195, 53
               

               
Conread position:
               
79-510
               

               
Cow position:
               
chrX:25035182-25035637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
75, 101
               

               
Conread position:
               
79-511
               

               
Cow position:
               
chrX:44192243-44192694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
21, 103
               

               
Conread position:
               
80-436
               

               
Cow position:
               
chrX:169343-169701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 58
               

               
Conread position:
               
80-462
               

               
Cow position:
               
chrX:1499852-1499468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
80-468
               

               
Cow position:
               
chrX:32420409-32420011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
117, 61
               

               
Conread position:
               
80-480
               

               
Cow position:
               
chrX:36283538-36283125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 85
               

               
Conread position:
               
80-491
               

               
Cow position:
               
chrX:36976150-36975718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 82
               

               
Conread position:
               
80-494
               

               
Cow position:
               
chrX:30962677-30963106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
191, 86
               

               
Conread position:
               
80-500
               

               
Cow position:
               
chrX:21672760-21672311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
158, 103
               

               
Conread position:
               
80-500
               

               
Cow position:
               
chrX:34543984-34543547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 101
               

               
Conread position:
               
80-501
               

               
Cow position:
               
chrX:21663493-21663068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 77
               

               
Conread position:
               
80-504
               

               
Cow position:
               
chrX:11656276-11655842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chrX:12290916-12290486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 49
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chrX:15546079-15545647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 6
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chrX:27508826-27509270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
66, 81
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chrX:27705785-27705343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
74, 100
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chrX:31948736-31949181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 100
               

               
Conread position:
               
80-512
               

               
Cow position:
               
chrX:11844042-11844493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 80
               

               
Conread position:
               
80-512
               

               
Cow position:
               
chrX:21593490-21593031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 117
               

               
Conread position:
               
80-512
               

               
Cow position:
               
chrX:34441255-34441702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 100
               

               
Conread position:
               
81-510
               

               
Cow position:
               
chrX:40183157-40183600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
72, 92
               

               
Conread position:
               
82-511
               

               
Cow position:
               
chrX:30922368-30921931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
189, 78
               

               
Conread position:
               
84-490
               

               
Cow position:
               
chrX:42380916-42381330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
46, 75
               

               
Conread position:
               
84-491
               

               
Cow position:
               
chrX:22115121-22115509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
84-509
               

               
Cow position:
               
chrX:20339699-20340140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chrX:755137-754708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
138, 56
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chrX:4996782-4996361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
84-511
               

               
Cow position:
               
chrX:20887451-20887895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
196, 48
               

               
Conread position:
               
95-512
               

               
Cow position:
               
chrX:7179074-7178657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
195, 23
               

               
Conread position:
               
98-510
               

               
Cow position:
               
chrX:12309205-12309639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
51, 82
               

               
Conread position:
               
104-510
               

               
Cow position:
               
chrX:23563616-23564047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
132-510
               

               
Cow position:
               
chrX:34754046-34754442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
155, 19
               

               
Conread position:
               
196-510
               

               
Cow position:
               
chrX:38071680-38072021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
89, 138
               

               
Conread position:
               
199-511
               

               
Cow position:
               
chrX:31442746-31443072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
201-500
               

               
Cow position:
               
chrX:38642330-38642020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
201-506
               

               
Cow position:
               
chrX:27589968-27590286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
202-410
               

               
Cow position:
               
chrX:29680181-29680409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 118
               

               
Conread position:
               
202-452
               

               
Cow position:
               
chrX:43730144-43730406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
202-487
               

               
Cow position:
               
chrX:11856510-11856202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 271
               

               
Conread position:
               
202-496
               

               
Cow position:
               
chrX:6690180-6690484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 126
               

               
Conread position:
               
202-499
               

               
Cow position:
               
chrX:45968228-45967921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
80, 124
               

               
Conread position:
               
202-500
               

               
Cow position:
               
chrX:26625591-26625917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
78, 166
               

               
Conread position:
               
202-500
               

               
Cow position:
               
chrX:27393946-27394254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
202-503
               

               
Cow position:
               
chrX:37489799-37489488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
95, 205
               

               
Conread position:
               
202-507
               

               
Cow position:
               
chrX:6278418-6278753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
202-509
               

               
Cow position:
               
chrX:11073111-11073440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
202-509
               

               
Cow position:
               
chrX:42469861-42470186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
32, 155
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:161492-161178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
85, 176
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:2467964-2467630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 322
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:11082542-11082863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:15597107-15596788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:19690295-19689968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:26440705-26441030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:30133238-30133574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 261
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:35268941-35268640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
202-512
               

               
Cow position:
               
chrX:5872397-5872061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
83, 133
               

               
Conread position:
               
202-512
               

               
Cow position:
               
chrX:34503000-34502668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 165
               

               
Conread position:
               
202-512
               

               
Cow position:
               
chrX:42507568-42507899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 114
               

               
Conread position:
               
203-509
               

               
Cow position:
               
chrX:37843798-37843471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
204-496
               

               
Cow position:
               
chrX:42492445-42492746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
90, 285
               

               
Conread position:
               
205-404
               

               
Cow position:
               
chrX:46788351-46788547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
148, 70
               

               
Conread position:
               
208-510
               

               
Cow position:
               
chrX:28846819-28847129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 116
               

               
Conread position:
               
209-448
               

               
Cow position:
               
chrX:7863508-7863758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 101
               

               
Conread position:
               
226-451
               

               
Cow position:
               
chrX:23785703-23785463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
63, 98
               

               
Conread position:
               
228-472
               

               
Cow position:
               
chrX:47046455-47046731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
228-500
               

               
Cow position:
               
chrX:4043810-4044092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
228-500
               

               
Cow position:
               
chrX:9855352-9855060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
228-500
               

               
Cow position:
               
chrX:42498993-42499269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 89
               

               
Conread position:
               
228-512
               

               
Cow position:
               
chrX:37836640-37836334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
47, 108
               

               
Conread position:
               
230-510
               

               
Cow position:
               
chrX:8900079-8899774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
233-500
               

               
Cow position:
               
chrX:9954188-9953901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chrX:40452169-40452462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
234-510
               

               
Cow position:
               
chrX:38577561-38577283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 88
               

               
Conread position:
               
235-510
               

               
Cow position:
               
chrX:42994660-42994364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 48
               

               
Conread position:
               
239-510
               

               
Cow position:
               
chrX:22482654-22482939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
240-469
               

               
Cow position:
               
chrX:40567640-40567391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
249-510
               

               
Cow position:
               
chrX:11581966-11581684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
282-498
               

               
Cow position:
               
chrX:6640112-6639886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
292-485
               

               
Cow position:
               
chrX:28013477-28013665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
175, 11
               

               
Conread position:
               
296-501
               

               
Cow position:
               
chrX:39938556-39938758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
296-510
               

               
Cow position:
               
chrX:27516496-27516283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
298-490
               

               
Cow position:
               
chrX:12405418-12405599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chrX:31489485-31489262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
303-496
               

               
Cow position:
               
chrX:40116381-40116189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
308-496
               

               
Cow position:
               
chrX:45113574-45113392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
308-511
               

               
Cow position:
               
chrX:28878214-28878413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
308-512
               

               
Cow position:
               
chrX:13868658-13868442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
311-494
               

               
Cow position:
               
chrX:13382282-13382090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
311-502
               

               
Cow position:
               
chrX:35284572-35284375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
312-484
               

               
Cow position:
               
chrX:10437706-10437889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
313-500
               

               
Cow position:
               
chrX:46984541-46984742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
318-432
               

               
Cow position:
               
chrX:4399075-4398954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
318-510
               

               
Cow position:
               
chrX:20582974-20582780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
318-510
               

               
Cow position:
               
chrX:39555885-39556067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
318-512
               

               
Cow position:
               
chrX:7695695-7695508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
190, 53
               

               
Conread position:
               
319-475
               

               
Cow position:
               
chrX:8070752-8070915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
41, 146
               

               
Conread position:
               
319-491
               

               
Cow position:
               
chrX:45566583-45566399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
319-491
               

               
Cow position:
               
chrX:47756981-47757160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
320-424
               

               
Cow position:
               
chrX:41068665-41068564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
320-429
               

               
Cow position:
               
chrX:41271263-41271376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-434
               

               
Cow position:
               
chrX:22387298-22387421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-443
               

               
Cow position:
               
chrX:32820974-32820847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
320-449
               

               
Cow position:
               
chrX:36356059-36355934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
320-458
               

               
Cow position:
               
chrX:33000847-33000706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
320-458
               

               
Cow position:
               
chrX:36961587-36961438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
320-459
               

               
Cow position:
               
chrX:8991829-8991689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
320-460
               

               
Cow position:
               
chrX:4091592-4091448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
320-466
               

               
Cow position:
               
chrX:29770229-29770384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
320-468
               

               
Cow position:
               
chrX:10831549-10831704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
320-469
               

               
Cow position:
               
chrX:25036751-25036908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
320-470
               

               
Cow position:
               
chrX:27174940-27174785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
320-471
               

               
Cow position:
               
chrX:37541069-37540916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
320-472
               

               
Cow position:
               
chrX:29601886-29602042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-472
               

               
Cow position:
               
chrX:46587764-46587606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
320-480
               

               
Cow position:
               
chrX:6234508-6234668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 77
               

               
Conread position:
               
320-482
               

               
Cow position:
               
chrX:19019162-19019334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
320-482
               

               
Cow position:
               
chrX:42461800-42461968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
320-483
               

               
Cow position:
               
chrX:16541727-16541899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
33, 155
               

               
Conread position:
               
320-484
               

               
Cow position:
               
chrX:16324020-16324187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
320-485
               

               
Cow position:
               
chrX:29509497-29509669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
320-487
               

               
Cow position:
               
chrX:39558406-39558575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
320-487
               

               
Cow position:
               
chrX:48684281-48684450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
320-488
               

               
Cow position:
               
chrX:36922592-36922419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
320-489
               

               
Cow position:
               
chrX:11746791-11746613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
320-491
               

               
Cow position:
               
chrX:42338998-42339167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
146, 56
               

               
Conread position:
               
320-493
               

               
Cow position:
               
chrX:44870694-44870863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
320-494
               

               
Cow position:
               
chrX:41199051-41198870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chrX:11589643-11589828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
49, 104
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chrX:17662649-17662833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chrX:20752199-20752027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chrX:41167020-41167200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chrX:1514462-1514640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
146, 51
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chrX:2206606-2206784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
146, 48
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chrX:23514071-23514258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chrX:25411785-25411600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 28
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chrX:43049293-43049102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chrX:44961693-44961507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chrX:30832903-30833079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chrX:34662903-34663080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
320-504
               

               
Cow position:
               
chrX:41743856-41743669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
320-505
               

               
Cow position:
               
chrX:5017470-5017651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
146, 31
               

               
Conread position:
               
320-508
               

               
Cow position:
               
chrX:44834865-44835064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-509
               

               
Cow position:
               
chrX:4269117-4269317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
320-509
               

               
Cow position:
               
chrX:15007205-15007400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
49, 104
               

               
Conread position:
               
320-509
               

               
Cow position:
               
chrX:40647930-40647729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:151849-151651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 108
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:7571847-7571656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:8731031-8730829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:10865923-10866117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:12115990-12115791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 183
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:14924945-14924750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:17498029-17497846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
146, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:18694980-18695171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:19188882-19188686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:25238118-25237928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:28845775-28845594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
182, 50
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:34401942-34401747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:34454611-34454419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:35609933-35609736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:36249917-36250112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:38094577-38094775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:38439422-38439223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:38967592-38967400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:40480924-40481123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:40826807-40826997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:42874928-42874728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:45393170-45393367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:45403883-45404084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:46722790-46722991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:47967545-47967350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 184
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:48195093-48195291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chrX:14599477-14599282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chrX:23583506-23583307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chrX:32020175-32020373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:7718800-7718601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:8797197-8796995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:8925645-8925451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:10306619-10306418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:28134289-28134094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 43
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:29048965-29048777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:38218654-38218463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:38964049-38963857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chrX:42855359-42855156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
321-483
               

               
Cow position:
               
chrX:6265656-6265809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
147, 29
               

               
Conread position:
               
321-491
               

               
Cow position:
               
chrX:19841713-19841889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
321-500
               

               
Cow position:
               
chrX:41403922-41403735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
32, 167
               

               
Conread position:
               
321-500
               

               
Cow position:
               
chrX:41410470-41410283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
32, 167
               

               
Conread position:
               
321-508
               

               
Cow position:
               
chrX:47481745-47481550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
321-510
               

               
Cow position:
               
chrX:22538008-22538204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
321-510
               

               
Cow position:
               
chrX:27106206-27106008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
321-510
               

               
Cow position:
               
chrX:37416129-37416325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
321-512
               

               
Cow position:
               
chrX:34270345-34270161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
322-442
               

               
Cow position:
               
chrX:7336771-7336645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
322-464
               

               
Cow position:
               
chrX:17908344-17908487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
322-486
               

               
Cow position:
               
chrX:44396960-44396789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
322-510
               

               
Cow position:
               
chrX:7382276-7382073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
322-510
               

               
Cow position:
               
chrX:41878990-41879181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
323-511
               

               
Cow position:
               
chrX:36778353-36778155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
324-483
               

               
Cow position:
               
chrX:6488517-6488363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 47
               

               
Conread position:
               
324-507
               

               
Cow position:
               
chrX:41674050-41673855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
326-464
               

               
Cow position:
               
chrX:29544939-29545083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
327-506
               

               
Cow position:
               
chrX:4905049-4905235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chrX:23451227-23451421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chrX:26531900-26531708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chrX:32188421-32188609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
338-510
               

               
Cow position:
               
chrX:46381850-46382026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
350-488
               

               
Cow position:
               
chrX:35925874-35925739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
350-496
               

               
Cow position:
               
chrX:23907737-23907883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
88, 54
               
Show alignments to all cow chromosomes.