Cow genome map

Conread name: rgul0111_e15.y1

Conread position: 1-190
Cow position: chr12:9465735-9465535 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 8

Conread position: 1-207
Cow position: chr12:8922064-8921844 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 96, 0

Conread position: 1-238
Cow position: chr12:24755299-24755058 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 94, 30

Conread position: 1-257
Cow position: chr12:26782606-26782876 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 96, 216

Conread position: 1-268
Cow position: chr12:45065559-45065824 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 117, 86

Conread position: 1-277
Cow position: chr12:3055861-3056145 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 5, 210

Conread position: 1-343
Cow position: chr12:6164304-6163950 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 296

Conread position: 1-360
Cow position: chr12:19691510-19691126 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 17

Conread position: 1-435
Cow position: chr12:7884930-7884513 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 286
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 143, 31

Conread position: 2-250
Cow position: chr12:29411763-29411504 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 95, 103

Conread position: 2-264
Cow position: chr12:6489251-6488991 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 55

Conread position: 2-268
Cow position: chr12:26317185-26317468 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 25, 63

Conread position: 2-277
Cow position: chr12:18943918-18943646 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 142, 91

Conread position: 2-345
Cow position: chr12:37770601-37770961 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 99

Conread position: 2-353
Cow position: chr12:41159322-41159688 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 256
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 95, 41

Conread position: 2-353
Cow position: chr12:42167371-42167729 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 249
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 94, 112

Conread position: 2-381
Cow position: chr12:32714768-32715163 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 274
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 95, 82

Conread position: 2-425
Cow position: chr12:18577575-18577984 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 64

Conread position: 2-432
Cow position: chr12:18421201-18420757 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 346

Conread position: 2-433
Cow position: chr12:36012883-36012447 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 284
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 123, 97

Conread position: 2-434
Cow position: chr12:42879432-42879865 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 314
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 95, 65

Conread position: 2-436
Cow position: chr12:30590502-30590937 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 294
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 95, 259

Conread position: 2-453
Cow position: chr12:39486155-39486614 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 195

Conread position: 3-165
Cow position: chr12:12976459-12976289 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 55, 0

Conread position: 3-200
Cow position: chr12:5134866-5135070 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 69, 0

Conread position: 3-205
Cow position: chr12:48437177-48436969 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 99, 0

Conread position: 3-266
Cow position: chr12:43942207-43942475 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 156, 87

Conread position: 3-268
Cow position: chr12:4341993-4341741 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 180, 74

Conread position: 3-268
Cow position: chr12:15258978-15258714 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 182, 85

Conread position: 3-276
Cow position: chr12:26223258-26222979 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 46, 25

Conread position: 3-277
Cow position: chr12:2812950-2813239 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 93, 28

Conread position: 3-277
Cow position: chr12:6411001-6410723 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 155, 74

Conread position: 3-286
Cow position: chr12:17079985-17080281 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 94, 60

Conread position: 3-345
Cow position: chr12:31959620-31959972 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 15, 112

Conread position: 3-354
Cow position: chr12:39465305-39465672 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 323

Conread position: 3-355
Cow position: chr12:18518398-18518780 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 66

Conread position: 3-355
Cow position: chr12:25805383-25805034 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 91

Conread position: 3-377
Cow position: chr12:5905784-5906176 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 72

Conread position: 3-430
Cow position: chr12:15089219-15089678 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 331
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 350

Conread position: 3-432
Cow position: chr12:19502693-19502250 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 193

Conread position: 3-433
Cow position: chr12:18123413-18123831 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 91

Conread position: 3-433
Cow position: chr12:44622086-44622525 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 292
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 155, 66

Conread position: 3-433
Cow position: chr12:45820630-45820162 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 35

Conread position: 3-435
Cow position: chr12:41083793-41084212 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 290
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 94, 14

Conread position: 3-436
Cow position: chr12:15429873-15429429 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 207

Conread position: 3-437
Cow position: chr12:9143120-9143555 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 174

Conread position: 3-440
Cow position: chr12:6720047-6720520 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 20

Conread position: 4-275
Cow position: chr12:18388554-18388279 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 73

Conread position: 4-275
Cow position: chr12:37993998-37993722 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 187
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 104, 143

Conread position: 4-344
Cow position: chr12:25561098-25561461 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 213

Conread position: 4-345
Cow position: chr12:5632146-5631788 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 248
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 155, 89

Conread position: 4-355
Cow position: chr12:11056604-11056979 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 201

Conread position: 4-425
Cow position: chr12:32169264-32169703 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 260

Conread position: 4-436
Cow position: chr12:16605918-16605501 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 289
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 162, 65

Conread position: 4-443
Cow position: chr12:20777203-20776756 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 324
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 68, 125

Conread position: 5-264
Cow position: chr12:3579008-3579285 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 24, 251

Conread position: 5-268
Cow position: chr12:8710560-8710824 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 159, 72

Conread position: 5-339
Cow position: chr12:30605427-30605081 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 214

Conread position: 5-425
Cow position: chr12:34148622-34148182 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 60

Conread position: 13-277
Cow position: chr12:6469307-6469048 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 48, 83

Conread position: 13-355
Cow position: chr12:15122073-15122433 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 249
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 82, 62

Conread position: 14-286
Cow position: chr12:45363095-45363382 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 196
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 73, 205

Conread position: 19-277
Cow position: chr12:15240981-15240726 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 147, 75

Conread position: 29-241
Cow position: chr12:19372353-19372131 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 67, 182

Conread position: 30-243
Cow position: chr12:24211170-24211391 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 67, 99

Conread position: 30-267
Cow position: chr12:23574524-23574765 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 129, 64

Conread position: 30-277
Cow position: chr12:37190072-37190327 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 97, 13

Conread position: 34-169
Cow position: chr12:15991545-15991411 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 89, 28

Conread position: 38-286
Cow position: chr12:24577492-24577231 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 59, 179

Conread position: 39-274
Cow position: chr12:35377962-35378211 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 39-277
Cow position: chr12:35669703-35669458 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 30

Conread position: 43-434
Cow position: chr12:27037681-27037249 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 5

Conread position: 45-274
Cow position: chr12:38454687-38454918 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 51, 22

Conread position: 45-277
Cow position: chr12:17270312-17270546 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 51, 17

Conread position: 76-345
Cow position: chr12:17879506-17879211 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 19, 32

Conread position: 84-344
Cow position: chr12:6485401-6485120 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 168

Conread position: 102-437
Cow position: chr12:15703672-15703325 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 241
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 240

Conread position: 116-435
Cow position: chr12:37170104-37169782 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 50, 236

Conread position: 143-420
Cow position: chr12:26777316-26777042 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 186
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 125

Conread position: 152-355
Cow position: chr12:17269688-17269909 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 152-433
Cow position: chr12:46120941-46120650 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 208
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 102, 36

Conread position: 152-448
Cow position: chr12:19258168-19258456 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 46

Conread position: 154-425
Cow position: chr12:11659816-11660084 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 180

Conread position: 156-313
Cow position: chr12:9791864-9791709 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 144, 113

Conread position: 156-437
Cow position: chr12:16670158-16670434 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 38

Conread position: 174-436
Cow position: chr12:5554425-5554169 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 173
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 33, 45

Show alignments to all cow chromosomes.