Cow genome map
| Conread name: | rgul0111_e15.y1 |
| Conread position: | 1-192 |
| Cow position: | chr15:24128975-24128772 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 81 |
| Conread position: | 1-260 |
| Cow position: | chr15:237054-236791 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 58 |
| Conread position: | 1-264 |
| Cow position: | chr15:6331732-6331987 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 124, 66 |
| Conread position: | 1-276 |
| Cow position: | chr15:363344-363065 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 165, 47 |
| Conread position: | 1-276 |
| Cow position: | chr15:20486891-20487163 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 123, 76 |
| Conread position: | 1-277 |
| Cow position: | chr15:18605710-18605446 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 1-277 |
| Cow position: | chr15:20472220-20472509 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 105, 36 |
| Conread position: | 1-277 |
| Cow position: | chr15:26404595-26404322 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 163, 68 |
| Conread position: | 1-355 |
| Cow position: | chr15:8962326-8961966 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 81 |
| Conread position: | 1-358 |
| Cow position: | chr15:33306433-33306055 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 16 |
| Conread position: | 2-192 |
| Cow position: | chr15:28513762-28513968 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 2-198 |
| Cow position: | chr15:36422981-36422773 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 2-253 |
| Cow position: | chr15:47105362-47105104 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 207 |
| Conread position: | 2-276 |
| Cow position: | chr15:6970311-6970027 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 93, 82 |
| Conread position: | 2-435 |
| Cow position: | chr15:24994200-24994627 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 75 |
| Conread position: | 2-437 |
| Cow position: | chr15:21941521-21941966 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 2-437 |
| Cow position: | chr15:39406060-39405624 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 95, 207 |
| Conread position: | 3-162 |
| Cow position: | chr15:34104590-34104436 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 123, 90 |
| Conread position: | 3-260 |
| Cow position: | chr15:39082525-39082266 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 81, 92 |
| Conread position: | 3-274 |
| Cow position: | chr15:8230257-8230525 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 168, 74 |
| Conread position: | 3-274 |
| Cow position: | chr15:36782008-36782283 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 163, 74 |
| Conread position: | 3-276 |
| Cow position: | chr15:13554665-13554393 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 136 |
| Conread position: | 3-277 |
| Cow position: | chr15:24044774-24045061 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 3-277 |
| Cow position: | chr15:31283692-31283424 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 146 |
| Conread position: | 3-286 |
| Cow position: | chr15:39090586-39090326 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 3-343 |
| Cow position: | chr15:22532565-22532212 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 240 |
| Conread position: | 3-354 |
| Cow position: | chr15:14871070-14870698 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 342 |
| Conread position: | 3-355 |
| Cow position: | chr15:26079047-26079403 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 157, 55 |
| Conread position: | 3-356 |
| Cow position: | chr15:30982240-30981893 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 163, 44 |
| Conread position: | 3-431 |
| Cow position: | chr15:22939009-22939436 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 163, 74 |
| Conread position: | 3-432 |
| Cow position: | chr15:22938453-22938880 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 3-437 |
| Cow position: | chr15:17869971-17870410 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 161, 58 |
| Conread position: | 3-437 |
| Cow position: | chr15:30985958-30986404 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 3-439 |
| Cow position: | chr15:25208441-25208879 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 193 |
| Conread position: | 4-269 |
| Cow position: | chr15:23567803-23568080 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 131, 39 |
| Conread position: | 4-427 |
| Cow position: | chr15:16476421-16476859 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 169 |
| Conread position: | 5-277 |
| Cow position: | chr15:41360641-41360911 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 5-338 |
| Cow position: | chr15:16307738-16307390 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 340 |
| Conread position: | 5-437 |
| Cow position: | chr15:29604395-29604841 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 92, 56 |
| Conread position: | 6-438 |
| Cow position: | chr15:28924445-28924881 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 299 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 121, 81 |
| Conread position: | 9-355 |
| Cow position: | chr15:28039074-28038731 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 87 |
| Conread position: | 12-264 |
| Cow position: | chr15:24128343-24128080 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 82, 14 |
| Conread position: | 12-425 |
| Cow position: | chr15:42788839-42789278 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 30 |
| Conread position: | 13-277 |
| Cow position: | chr15:13515686-13515405 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 13-425 |
| Cow position: | chr15:20082074-20081668 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 164 |
| Conread position: | 13-430 |
| Cow position: | chr15:10456696-10457139 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 13-430 |
| Cow position: | chr15:20390964-20391388 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 92 |
| Conread position: | 17-355 |
| Cow position: | chr15:47843797-47844147 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 80, 137 |
| Conread position: | 19-275 |
| Cow position: | chr15:41225253-41225522 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 196 |
| Conread position: | 29-433 |
| Cow position: | chr15:50351115-50350729 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 32-355 |
| Cow position: | chr15:23696622-23696959 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 117, 43 |
| Conread position: | 32-431 |
| Cow position: | chr15:36259307-36259709 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 36-355 |
| Cow position: | chr15:5420591-5420939 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 36-437 |
| Cow position: | chr15:2141004-2141439 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 39-345 |
| Cow position: | chr15:33643374-33643048 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 102, 28 |
| Conread position: | 39-355 |
| Cow position: | chr15:7456985-7456660 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 45-343 |
| Cow position: | chr15:245056-244740 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 45-353 |
| Cow position: | chr15:25907195-25906863 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 46-266 |
| Cow position: | chr15:41045686-41045456 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 46-277 |
| Cow position: | chr15:38877022-38877265 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 47-241 |
| Cow position: | chr15:49230061-49230264 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 160 |
| Conread position: | 62-430 |
| Cow position: | chr15:275912-275532 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 34, 299 |
| Conread position: | 77-322 |
| Cow position: | chr15:6905315-6905060 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 19, 62 |
| Conread position: | 82-277 |
| Cow position: | chr15:26117754-26117561 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 99-345 |
| Cow position: | chr15:53716661-53716393 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 99-355 |
| Cow position: | chr15:36353897-36353612 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 102-345 |
| Cow position: | chr15:2380582-2380322 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 48, 172 |
| Conread position: | 149-436 |
| Cow position: | chr15:10442339-10442628 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 151-327 |
| Cow position: | chr15:78736-78553 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 150 |
| Conread position: | 152-294 |
| Cow position: | chr15:18647539-18647392 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 152-355 |
| Cow position: | chr15:14888479-14888694 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 152-355 |
| Cow position: | chr15:16261475-16261273 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 151, 42 |
| Conread position: | 152-355 |
| Cow position: | chr15:51307518-51307727 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 152-431 |
| Cow position: | chr15:1503067-1502801 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 170 |
| Conread position: | 152-433 |
| Cow position: | chr15:30470808-30471093 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 127, 188 |
| Conread position: | 153-355 |
| Cow position: | chr15:14988152-14987938 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 156-355 |
| Cow position: | chr15:4694903-4694690 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 160-435 |
| Cow position: | chr15:3695788-3695521 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 162-365 |
| Cow position: | chr15:32234179-32234389 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 185-439 |
| Cow position: | chr15:50333110-50332855 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 224-437 |
| Cow position: | chr15:10153757-10153553 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 86 |
Show alignments to all cow chromosomes.