Cow genome map

Conread name: rgul0111_e15.y1

Conread position: 1-276
Cow position: chr17:37163723-37163441 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 95, 150

Conread position: 1-277
Cow position: chr17:1256700-1256409 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 105, 218

Conread position: 1-330
Cow position: chr17:14848719-14848389 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 166, 76

Conread position: 1-343
Cow position: chr17:17405942-17406303 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 1-431
Cow position: chr17:24004198-24004615 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 285
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 153, 61

Conread position: 1-433
Cow position: chr17:7810935-7810503 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 201

Conread position: 1-438
Cow position: chr17:25875216-25875644 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 286
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 121, 81

Conread position: 2-229
Cow position: chr17:21680573-21680809 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 95, 223

Conread position: 2-338
Cow position: chr17:39735990-39736337 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 245
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 145, 75

Conread position: 2-356
Cow position: chr17:5423267-5422890 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 38

Conread position: 2-433
Cow position: chr17:26818648-26818228 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 220

Conread position: 2-436
Cow position: chr17:17059244-17059665 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 65

Conread position: 3-246
Cow position: chr17:12216271-12216023 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 3-255
Cow position: chr17:27765087-27765341 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 88, 137

Conread position: 3-267
Cow position: chr17:26514521-26514803 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 3-268
Cow position: chr17:15333905-15333628 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 163, 95

Conread position: 3-274
Cow position: chr17:18592246-18592530 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 217

Conread position: 3-276
Cow position: chr17:20072269-20072009 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 143, 72

Conread position: 3-276
Cow position: chr17:20081973-20081708 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 183
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 46

Conread position: 3-277
Cow position: chr17:3503392-3503672 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 145, 73

Conread position: 3-334
Cow position: chr17:26764819-26765184 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 261
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 95, 187

Conread position: 3-339
Cow position: chr17:18495704-18495354 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 255
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 155, 40

Conread position: 3-339
Cow position: chr17:33792988-33793329 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 151, 72

Conread position: 3-345
Cow position: chr17:24587424-24587796 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 3-345
Cow position: chr17:33288848-33288485 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 72

Conread position: 3-353
Cow position: chr17:9911569-9911937 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 93

Conread position: 3-353
Cow position: chr17:27429384-27429743 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 252

Conread position: 3-355
Cow position: chr17:5767720-5768086 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 92

Conread position: 3-355
Cow position: chr17:12325940-12325583 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 64

Conread position: 3-355
Cow position: chr17:21004025-21003644 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 316

Conread position: 3-355
Cow position: chr17:24787215-24786838 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 125

Conread position: 3-357
Cow position: chr17:29715380-29715023 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 72

Conread position: 3-387
Cow position: chr17:24553810-24554205 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 164

Conread position: 3-429
Cow position: chr17:20090815-20090389 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 298
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 163, 91

Conread position: 3-430
Cow position: chr17:21599876-21599439 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 284
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 94, 39

Conread position: 3-431
Cow position: chr17:3388666-3389076 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 288
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 269, 59

Conread position: 3-431
Cow position: chr17:4225685-4225244 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 90

Conread position: 3-435
Cow position: chr17:15103082-15102643 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 196

Conread position: 3-435
Cow position: chr17:24824058-24824492 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 74

Conread position: 3-436
Cow position: chr17:24973757-24974190 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 163

Conread position: 3-437
Cow position: chr17:32138594-32138169 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 50

Conread position: 3-446
Cow position: chr17:9853792-9854239 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 199

Conread position: 4-345
Cow position: chr17:18109279-18108919 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 71

Conread position: 4-355
Cow position: chr17:5000769-5000414 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 156, 89

Conread position: 4-355
Cow position: chr17:33933930-33933562 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 269
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 144, 71

Conread position: 4-425
Cow position: chr17:21115141-21114719 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 288
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 160, 58

Conread position: 4-427
Cow position: chr17:25901004-25901446 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 8

Conread position: 4-437
Cow position: chr17:20157422-20157856 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 300
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 143, 73

Conread position: 5-223
Cow position: chr17:4436423-4436194 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 73, 90

Conread position: 5-277
Cow position: chr17:2034353-2034620 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 193
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 154, 57

Conread position: 5-277
Cow position: chr17:25542004-25541726 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 130, 14

Conread position: 5-354
Cow position: chr17:18472984-18473349 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 157

Conread position: 5-425
Cow position: chr17:11664783-11664341 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 61

Conread position: 6-277
Cow position: chr17:25032663-25032391 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 89, 135

Conread position: 6-277
Cow position: chr17:38646873-38647152 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 71

Conread position: 6-433
Cow position: chr17:40331574-40332023 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 305
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 129, 88

Conread position: 6-434
Cow position: chr17:29084012-29084412 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 289
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 142, 48

Conread position: 7-437
Cow position: chr17:12536658-12536225 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 82

Conread position: 9-276
Cow position: chr17:3202589-3202324 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 184
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 89, 45

Conread position: 13-277
Cow position: chr17:22806725-22806452 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 83, 149

Conread position: 13-355
Cow position: chr17:1063005-1063358 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 249
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 149, 69

Conread position: 13-435
Cow position: chr17:908562-908985 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 298
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 129, 81

Conread position: 15-277
Cow position: chr17:3577356-3577630 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 15-354
Cow position: chr17:32989310-32989657 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 143, 51

Conread position: 15-354
Cow position: chr17:32993796-32993443 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 51

Conread position: 16-277
Cow position: chr17:265475-265762 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 65, 253

Conread position: 33-276
Cow position: chr17:5398600-5398352 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 177

Conread position: 33-437
Cow position: chr17:4106150-4105744 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 287
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 47, 56

Conread position: 33-437
Cow position: chr17:4121886-4121479 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 47, 56

Conread position: 39-435
Cow position: chr17:31037538-31037131 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 291
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 110, 55

Conread position: 41-277
Cow position: chr17:4967954-4968203 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 55, 158

Conread position: 42-356
Cow position: chr17:32348921-32349251 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 122, 10

Conread position: 46-425
Cow position: chr17:3467618-3467987 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 261
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 105, 47

Conread position: 47-241
Cow position: chr17:42259050-42259238 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 113, 46

Conread position: 49-435
Cow position: chr17:1634633-1634245 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 273
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 28

Conread position: 62-425
Cow position: chr17:30728382-30728743 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 271
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 32, 70

Conread position: 66-437
Cow position: chr17:40673251-40673621 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 240
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 105

Conread position: 68-436
Cow position: chr17:6318990-6318621 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 251
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 28, 140

Conread position: 98-286
Cow position: chr17:35573663-35573852 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 60, 103

Conread position: 99-432
Cow position: chr17:11912596-11912262 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 63, 87

Conread position: 107-277
Cow position: chr17:21922713-21922543 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 92

Conread position: 133-433
Cow position: chr17:8949015-8948723 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 134, 27

Conread position: 152-433
Cow position: chr17:32333124-32332848 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 42

Conread position: 152-434
Cow position: chr17:9824637-9824912 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 61

Conread position: 152-435
Cow position: chr17:25800914-25800638 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 103, 42

Conread position: 152-435
Cow position: chr17:40638918-40639193 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 128, 36

Conread position: 152-436
Cow position: chr17:3153603-3153321 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 126, 23

Conread position: 153-345
Cow position: chr17:21039531-21039729 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 125, 41

Conread position: 154-341
Cow position: chr17:11368881-11368689 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 125, 171

Conread position: 154-437
Cow position: chr17:22017117-22016816 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 41, 267

Conread position: 156-434
Cow position: chr17:25511214-25511487 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 64

Conread position: 157-437
Cow position: chr17:29995465-29995187 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 192, 121

Conread position: 165-421
Cow position: chr17:24163018-24163266 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 33, 81

Conread position: 179-437
Cow position: chr17:21466269-21466010 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 172
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 129, 29

Show alignments to all cow chromosomes.