Cow genome map

Conread name: rgul0111_e15.y1

Conread position: 1-268
Cow position: chr18:43823222-43822942 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 95, 197

Conread position: 1-276
Cow position: chr18:7950844-7951131 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 102, 128

Conread position: 1-277
Cow position: chr18:9029349-9029627 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 96, 192

Conread position: 1-277
Cow position: chr18:11684721-11684999 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 14

Conread position: 1-277
Cow position: chr18:52637798-52637512 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 56

Conread position: 1-277
Cow position: chr18:55692553-55692833 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 79, 8

Conread position: 1-281
Cow position: chr18:6610126-6609837 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 94, 64

Conread position: 1-297
Cow position: chr18:6275547-6275849 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 203
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 96, 150

Conread position: 1-297
Cow position: chr18:12776042-12775746 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 121, 75

Conread position: 1-438
Cow position: chr18:7965994-7966419 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 292
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 94, 22

Conread position: 2-277
Cow position: chr18:29958415-29958147 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 147, 61

Conread position: 2-277
Cow position: chr18:40758947-40759224 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 93, 75

Conread position: 2-277
Cow position: chr18:51211913-51212201 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 2-352
Cow position: chr18:29356898-29356531 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 85

Conread position: 2-353
Cow position: chr18:29065641-29065281 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 69, 30

Conread position: 2-355
Cow position: chr18:9010463-9010818 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 247
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 164, 55

Conread position: 2-355
Cow position: chr18:9089436-9089807 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 162, 10

Conread position: 2-438
Cow position: chr18:19193618-19193197 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 294
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 111, 59

Conread position: 3-233
Cow position: chr18:81489-81720 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 203

Conread position: 3-254
Cow position: chr18:21195605-21195347 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 93, 73

Conread position: 3-266
Cow position: chr18:7486985-7487256 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 42, 203

Conread position: 3-273
Cow position: chr18:45570754-45571027 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 212
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 145, 74

Conread position: 3-274
Cow position: chr18:47183551-47183279 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 191
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 163, 200

Conread position: 3-276
Cow position: chr18:8105208-8104923 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 148, 31

Conread position: 3-276
Cow position: chr18:55119607-55119888 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 3-277
Cow position: chr18:11831871-11832137 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 163, 92

Conread position: 3-277
Cow position: chr18:14048446-14048726 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 93, 54

Conread position: 3-277
Cow position: chr18:32773612-32773896 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 189
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 32

Conread position: 3-279
Cow position: chr18:16417964-16417687 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 94, 107

Conread position: 3-286
Cow position: chr18:50637730-50637445 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 164

Conread position: 3-322
Cow position: chr18:13507999-13507667 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 146, 72

Conread position: 3-340
Cow position: chr18:47511728-47512099 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 62, 87

Conread position: 3-355
Cow position: chr18:34527369-34526988 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 272
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 83, 185

Conread position: 3-355
Cow position: chr18:46453145-46452770 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 84

Conread position: 3-360
Cow position: chr18:28924098-28923736 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 25

Conread position: 3-364
Cow position: chr18:50082512-50082154 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 261
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 146, 87

Conread position: 3-378
Cow position: chr18:30794167-30794558 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 91

Conread position: 3-383
Cow position: chr18:46727329-46727730 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 196

Conread position: 3-427
Cow position: chr18:33158696-33159107 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 284
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 100, 58

Conread position: 3-433
Cow position: chr18:3416905-3417336 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 14

Conread position: 3-435
Cow position: chr18:30360387-30359971 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 298
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 145, 51

Conread position: 3-435
Cow position: chr18:36230978-36230534 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 310
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 92, 48

Conread position: 3-437
Cow position: chr18:3180153-3180584 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 285
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 163, 81

Conread position: 3-437
Cow position: chr18:7964964-7965406 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 281
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 94, 212

Conread position: 3-437
Cow position: chr18:12118111-12117679 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 299
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 91, 133

Conread position: 4-170
Cow position: chr18:13293243-13293410 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 139
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 160, 0

Conread position: 4-264
Cow position: chr18:30248394-30248132 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 154, 90

Conread position: 4-277
Cow position: chr18:29759785-29760044 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 74, 41

Conread position: 4-277
Cow position: chr18:44484024-44483756 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 93, 24

Conread position: 4-335
Cow position: chr18:33407344-33407693 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 208

Conread position: 4-345
Cow position: chr18:29058762-29058403 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 60

Conread position: 4-349
Cow position: chr18:4796703-4797066 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 45

Conread position: 4-355
Cow position: chr18:20641751-20641388 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 245
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 152, 93

Conread position: 4-412
Cow position: chr18:25647516-25647084 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 89

Conread position: 4-434
Cow position: chr18:28101360-28101805 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 257

Conread position: 5-277
Cow position: chr18:51827030-51827298 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 122, 72

Conread position: 5-346
Cow position: chr18:55001007-55000645 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 60, 133

Conread position: 5-355
Cow position: chr18:23630842-23630502 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 193, 46

Conread position: 5-433
Cow position: chr18:39875523-39875075 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 40

Conread position: 5-435
Cow position: chr18:7951935-7952382 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 315
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 92, 58

Conread position: 6-437
Cow position: chr18:4884779-4884345 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 330

Conread position: 10-335
Cow position: chr18:11790679-11791009 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 151, 18

Conread position: 12-436
Cow position: chr18:10977466-10977042 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 15

Conread position: 13-288
Cow position: chr18:26938726-26939011 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 57

Conread position: 17-337
Cow position: chr18:38686839-38687170 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 77, 179

Conread position: 22-275
Cow position: chr18:11618230-11618483 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 75, 38

Conread position: 27-433
Cow position: chr18:42431848-42431444 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 277
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 120, 67

Conread position: 27-435
Cow position: chr18:42432331-42431920 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 42

Conread position: 28-232
Cow position: chr18:3018321-3018103 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 68, 0

Conread position: 28-425
Cow position: chr18:17391216-17390828 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 280
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 239, 56

Conread position: 36-176
Cow position: chr18:895793-895935 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 37-260
Cow position: chr18:41025360-41025146 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 60, 96

Conread position: 39-432
Cow position: chr18:42479823-42479411 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 290
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 57, 182

Conread position: 40-349
Cow position: chr18:45637632-45637314 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 219
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 19, 64

Conread position: 41-355
Cow position: chr18:6881578-6881243 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 250
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 55, 9

Conread position: 42-433
Cow position: chr18:31082559-31082173 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 91

Conread position: 45-345
Cow position: chr18:10891301-10891611 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 103, 31

Conread position: 46-435
Cow position: chr18:1954820-1954408 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 294
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 11, 161

Conread position: 55-425
Cow position: chr18:12270296-12270674 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 252
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 94, 42

Conread position: 56-264
Cow position: chr18:6103313-6103093 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 70

Conread position: 62-260
Cow position: chr18:19887780-19887580 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 26

Conread position: 77-340
Cow position: chr18:54111022-54111300 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 19, 128

Conread position: 80-355
Cow position: chr18:34834320-34834609 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 22

Conread position: 83-344
Cow position: chr18:8299822-8300115 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 83-435
Cow position: chr18:8171273-8170919 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 242
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 33

Conread position: 94-316
Cow position: chr18:51190768-51190532 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 64, 110

Conread position: 94-354
Cow position: chr18:28930807-28930529 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 94-450
Cow position: chr18:15517342-15516985 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 241
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 50, 204

Conread position: 102-435
Cow position: chr18:48633623-48633961 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 62, 90

Conread position: 118-433
Cow position: chr18:50095547-50095239 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 33, 92

Conread position: 143-425
Cow position: chr18:22569184-22568906 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 60

Conread position: 152-267
Cow position: chr18:31711673-31711557 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 152-418
Cow position: chr18:49841173-49841438 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 54, 149

Conread position: 152-424
Cow position: chr18:52403077-52402804 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 226

Conread position: 152-437
Cow position: chr18:41950111-41950387 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 127, 26

Conread position: 154-275
Cow position: chr18:29991617-29991495 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 154-355
Cow position: chr18:49038356-49038572 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 121, 0

Conread position: 154-434
Cow position: chr18:25598345-25598062 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 184

Conread position: 163-434
Cow position: chr18:32252264-32251994 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 115, 44

Conread position: 173-355
Cow position: chr18:14830929-14830739 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 105, 21

Show alignments to all cow chromosomes.