Cow genome map

Conread name: rgul0111_e15.y1

Conread position: 1-241
Cow position: chr19:43702950-43702706 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 150, 35

Conread position: 1-268
Cow position: chr19:39751233-39751498 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 201

Conread position: 1-277
Cow position: chr19:11534441-11534712 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 166, 34

Conread position: 1-277
Cow position: chr19:20671149-20670867 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 1-277
Cow position: chr19:23403892-23403605 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 105, 209

Conread position: 1-277
Cow position: chr19:39245652-39245939 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 203
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 122, 66

Conread position: 1-286
Cow position: chr19:24062049-24062325 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 158, 68

Conread position: 1-355
Cow position: chr19:30471585-30471222 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 254
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 164, 66

Conread position: 1-437
Cow position: chr19:38392549-38393004 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 296

Conread position: 2-258
Cow position: chr19:33858506-33858749 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 94, 25

Conread position: 2-276
Cow position: chr19:8332047-8332338 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 94, 56

Conread position: 2-335
Cow position: chr19:24669615-24669268 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 248
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 95, 193

Conread position: 2-343
Cow position: chr19:24358471-24358128 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 164, 93

Conread position: 3-201
Cow position: chr19:47558117-47558307 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 135, 72

Conread position: 3-205
Cow position: chr19:43066936-43067135 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 71, 127

Conread position: 3-245
Cow position: chr19:10286662-10286903 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 184
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 158, 90

Conread position: 3-250
Cow position: chr19:56382901-56383161 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 137, 74

Conread position: 3-265
Cow position: chr19:25999386-25999648 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 155, 88

Conread position: 3-273
Cow position: chr19:25572200-25572461 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 134, 91

Conread position: 3-274
Cow position: chr19:17664395-17664676 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 13

Conread position: 3-276
Cow position: chr19:30533695-30533968 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 93, 217

Conread position: 3-277
Cow position: chr19:9583069-9583327 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 111, 73

Conread position: 3-277
Cow position: chr19:31846788-31846511 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 125, 37

Conread position: 3-277
Cow position: chr19:35741912-35742201 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 121

Conread position: 3-277
Cow position: chr19:55784734-55785000 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 145, 79

Conread position: 3-286
Cow position: chr19:17479206-17478911 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 146, 74

Conread position: 3-345
Cow position: chr19:29368153-29368516 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 79

Conread position: 3-345
Cow position: chr19:29625657-29626021 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 80

Conread position: 3-351
Cow position: chr19:1968550-1968190 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 139, 92

Conread position: 3-354
Cow position: chr19:34955943-34955578 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 300

Conread position: 3-354
Cow position: chr19:41945943-41946312 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 74

Conread position: 3-355
Cow position: chr19:23785943-23786311 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 217

Conread position: 3-355
Cow position: chr19:44839145-44838805 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 26, 52

Conread position: 3-355
Cow position: chr19:46454605-46454976 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 25

Conread position: 3-356
Cow position: chr19:10213425-10213804 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 75

Conread position: 3-410
Cow position: chr19:39056999-39057417 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 53

Conread position: 3-432
Cow position: chr19:16096798-16096362 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 307

Conread position: 3-433
Cow position: chr19:15887568-15887124 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 20

Conread position: 3-433
Cow position: chr19:36059686-36060146 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 113

Conread position: 3-437
Cow position: chr19:20661661-20661216 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 33

Conread position: 3-438
Cow position: chr19:7668459-7668895 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 319
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 90, 45

Conread position: 3-439
Cow position: chr19:16566913-16567357 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 16

Conread position: 3-447
Cow position: chr19:2577330-2577779 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 304
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 115, 40

Conread position: 4-199
Cow position: chr19:25696452-25696246 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 91, 0

Conread position: 4-254
Cow position: chr19:39697826-39698080 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 180, 90

Conread position: 4-277
Cow position: chr19:29070952-29070680 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 66

Conread position: 4-413
Cow position: chr19:20332051-20331648 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 252
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 92, 83

Conread position: 4-417
Cow position: chr19:21378710-21378290 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 73

Conread position: 4-417
Cow position: chr19:35018492-35018055 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 57

Conread position: 4-435
Cow position: chr19:7637481-7637041 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 292
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 61, 91

Conread position: 4-437
Cow position: chr19:729975-729552 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 290
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 93, 39

Conread position: 5-258
Cow position: chr19:20693252-20693520 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 90

Conread position: 5-353
Cow position: chr19:13129638-13129998 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 262
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 159, 52

Conread position: 5-353
Cow position: chr19:27612412-27612045 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 266
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 90, 70

Conread position: 5-355
Cow position: chr19:47671507-47671868 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 264
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 90, 61

Conread position: 5-436
Cow position: chr19:5116111-5115697 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 285
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 159, 61

Conread position: 6-267
Cow position: chr19:15766969-15767232 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 114, 69

Conread position: 6-277
Cow position: chr19:38842798-38842520 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 199
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 89, 76

Conread position: 6-433
Cow position: chr19:50161773-50162187 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 296
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 146, 13

Conread position: 7-268
Cow position: chr19:50025648-50025911 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 185
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 116, 9

Conread position: 9-316
Cow position: chr19:25086296-25086597 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 11, 69

Conread position: 13-233
Cow position: chr19:37502903-37502684 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 83, 121

Conread position: 13-339
Cow position: chr19:5656346-5656012 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 248
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 82, 112

Conread position: 16-282
Cow position: chr19:36722091-36722356 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 80, 59

Conread position: 17-268
Cow position: chr19:47727803-47727541 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 127, 57

Conread position: 17-433
Cow position: chr19:5185482-5185066 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 289
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 69, 307

Conread position: 22-173
Cow position: chr19:25835583-25835432 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 142, 72

Conread position: 27-354
Cow position: chr19:42903797-42904128 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 138, 50

Conread position: 28-277
Cow position: chr19:22039550-22039813 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 99, 65

Conread position: 29-343
Cow position: chr19:34000990-34001313 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 129, 14

Conread position: 33-355
Cow position: chr19:17972475-17972130 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 23, 28

Conread position: 35-346
Cow position: chr19:16105276-16104961 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 62, 91

Conread position: 36-433
Cow position: chr19:15852733-15853118 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 258
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 56

Conread position: 38-277
Cow position: chr19:32506321-32506078 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 90, 39

Conread position: 39-357
Cow position: chr19:23784611-23784289 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 101

Conread position: 47-161
Cow position: chr19:38724052-38723935 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 25, 35

Conread position: 80-267
Cow position: chr19:7884410-7884609 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 127

Conread position: 82-427
Cow position: chr19:34287854-34288201 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 239
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 221

Conread position: 83-277
Cow position: chr19:13730006-13729797 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 38

Conread position: 83-355
Cow position: chr19:15719787-15719490 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 13, 23

Conread position: 89-278
Cow position: chr19:18153008-18153205 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 8, 12

Conread position: 96-354
Cow position: chr19:47453282-47453561 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 96-433
Cow position: chr19:18129406-18129752 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 244
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 31, 254

Conread position: 100-355
Cow position: chr19:15092277-15092006 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 184
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 163

Conread position: 102-437
Cow position: chr19:52158387-52158738 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 56, 207

Conread position: 105-341
Cow position: chr19:6334012-6334258 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 43, 92

Conread position: 106-355
Cow position: chr19:38500037-38500290 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 24, 38

Conread position: 112-433
Cow position: chr19:25035348-25035692 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 236
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 38, 97

Conread position: 145-434
Cow position: chr19:7148156-7147863 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 187
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 181, 163

Conread position: 152-425
Cow position: chr19:19549632-19549371 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 40, 128

Conread position: 152-435
Cow position: chr19:12052931-12052653 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 34, 22

Conread position: 152-435
Cow position: chr19:12067660-12067938 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 34, 22

Conread position: 152-435
Cow position: chr19:34420329-34420603 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 47

Conread position: 154-277
Cow position: chr19:11212483-11212359 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 167-425
Cow position: chr19:34758068-34757808 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 103, 22

Conread position: 198-436
Cow position: chr19:38732099-38732333 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 131, 168

Show alignments to all cow chromosomes.