Cow genome map
| Conread name: | rgul0111_e15.y1 |
| Conread position: | 1-277 |
| Cow position: | chr20:31927652-31927369 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 105, 150 |
| Conread position: | 1-277 |
| Cow position: | chr20:34776992-34777273 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 121, 79 |
| Conread position: | 1-297 |
| Cow position: | chr20:24398826-24398532 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 126, 74 |
| Conread position: | 1-326 |
| Cow position: | chr20:33363326-33363672 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 148, 69 |
| Conread position: | 1-345 |
| Cow position: | chr20:22064876-22065236 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 83 |
| Conread position: | 1-364 |
| Cow position: | chr20:19363556-19363184 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 1-433 |
| Cow position: | chr20:3599583-3599156 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 150, 8 |
| Conread position: | 2-277 |
| Cow position: | chr20:24069618-24069899 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 147, 21 |
| Conread position: | 2-355 |
| Cow position: | chr20:28605012-28605395 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 95 |
| Conread position: | 2-425 |
| Cow position: | chr20:31740409-31739979 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 2-433 |
| Cow position: | chr20:28982504-28982945 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 71 |
| Conread position: | 2-437 |
| Cow position: | chr20:13269431-13269864 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 3-267 |
| Cow position: | chr20:22235123-22235390 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 161, 91 |
| Conread position: | 3-268 |
| Cow position: | chr20:3502102-3502351 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 85, 104 |
| Conread position: | 3-277 |
| Cow position: | chr20:3607146-3606868 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 56 |
| Conread position: | 3-286 |
| Cow position: | chr20:5998856-5998569 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 90 |
| Conread position: | 3-323 |
| Cow position: | chr20:8607112-8606793 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 93, 136 |
| Conread position: | 3-343 |
| Cow position: | chr20:38768645-38768293 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 161, 77 |
| Conread position: | 3-344 |
| Cow position: | chr20:7756821-7756453 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 121, 90 |
| Conread position: | 3-354 |
| Cow position: | chr20:7426381-7426010 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 123 |
| Conread position: | 3-355 |
| Cow position: | chr20:5702553-5702910 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 149 |
| Conread position: | 3-355 |
| Cow position: | chr20:6258255-6257887 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 3-431 |
| Cow position: | chr20:32847161-32847586 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 3-431 |
| Cow position: | chr20:34202455-34202886 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 275 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 94, 165 |
| Conread position: | 3-433 |
| Cow position: | chr20:14806694-14807129 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 92 |
| Conread position: | 3-437 |
| Cow position: | chr20:5826745-5827213 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 243 |
| Conread position: | 4-355 |
| Cow position: | chr20:398485-398123 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 57 |
| Conread position: | 4-440 |
| Cow position: | chr20:8578053-8578503 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 211 |
| Conread position: | 5-340 |
| Cow position: | chr20:38817820-38818165 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 137, 72 |
| Conread position: | 5-350 |
| Cow position: | chr20:32084274-32083915 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 5-434 |
| Cow position: | chr20:12582137-12581709 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 62 |
| Conread position: | 6-433 |
| Cow position: | chr20:26996341-26996780 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 217 |
| Conread position: | 9-343 |
| Cow position: | chr20:19459833-19459505 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 15-277 |
| Cow position: | chr20:39743134-39743403 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 52, 126 |
| Conread position: | 27-436 |
| Cow position: | chr20:3254880-3255283 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 286 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 26, 171 |
| Conread position: | 28-277 |
| Cow position: | chr20:7210868-7211133 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 10, 183 |
| Conread position: | 31-276 |
| Cow position: | chr20:13652521-13652275 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 36-162 |
| Cow position: | chr20:18837320-18837190 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 39-433 |
| Cow position: | chr20:20241944-20242355 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 97, 55 |
| Conread position: | 45-277 |
| Cow position: | chr20:10789016-10788797 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 106, 28 |
| Conread position: | 45-375 |
| Cow position: | chr20:2169858-2169532 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 46-445 |
| Cow position: | chr20:28441177-28441577 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 50, 158 |
| Conread position: | 48-432 |
| Cow position: | chr20:4334667-4334293 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 54-268 |
| Cow position: | chr20:9267242-9267020 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 100, 156 |
| Conread position: | 54-277 |
| Cow position: | chr20:14540211-14540437 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 58-355 |
| Cow position: | chr20:8546931-8547253 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 91, 35 |
| Conread position: | 61-355 |
| Cow position: | chr20:2298911-2298606 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 104, 33 |
| Conread position: | 64-277 |
| Cow position: | chr20:7362835-7363055 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 83-437 |
| Cow position: | chr20:38431111-38430769 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 164 |
| Conread position: | 84-329 |
| Cow position: | chr20:23286434-23286190 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 12 |
| Conread position: | 96-433 |
| Cow position: | chr20:18379282-18379623 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 70, 264 |
| Conread position: | 110-286 |
| Cow position: | chr20:26077743-26077566 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 110-339 |
| Cow position: | chr20:32866273-32866028 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 150-353 |
| Cow position: | chr20:25351439-25351239 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 94 |
| Conread position: | 152-437 |
| Cow position: | chr20:38089882-38090166 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 122, 42 |
| Conread position: | 154-425 |
| Cow position: | chr20:11751621-11751892 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 117 |
| Conread position: | 156-277 |
| Cow position: | chr20:35354849-35354729 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 156-441 |
| Cow position: | chr20:17100335-17100626 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 114, 223 |
| Conread position: | 165-277 |
| Cow position: | chr20:1009722-1009613 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 170-437 |
| Cow position: | chr20:11043489-11043211 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 17, 171 |
Show alignments to all cow chromosomes.