Cow genome map

Conread name: rgul0111_e15.y1

Conread position: 1-277
Cow position: chr21:725065-724771 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 278

Conread position: 1-292
Cow position: chr21:45151796-45151500 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 96, 69

Conread position: 1-297
Cow position: chr21:39664562-39664263 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 121, 93

Conread position: 1-355
Cow position: chr21:81897-82274 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 94, 188

Conread position: 1-424
Cow position: chr21:29069502-29069065 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 93

Conread position: 1-425
Cow position: chr21:20262507-20262088 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 233

Conread position: 1-441
Cow position: chr21:7672960-7673387 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 300
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 149, 8

Conread position: 2-277
Cow position: chr21:22860829-22861116 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 90

Conread position: 2-277
Cow position: chr21:24130908-24131183 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 157, 92

Conread position: 2-334
Cow position: chr21:30990441-30990105 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 65

Conread position: 2-349
Cow position: chr21:29484811-29485177 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 87

Conread position: 2-433
Cow position: chr21:5392715-5392238 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 117

Conread position: 2-433
Cow position: chr21:37299292-37299727 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 302
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 97

Conread position: 2-436
Cow position: chr21:23821995-23822422 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 306
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 8, 27

Conread position: 3-236
Cow position: chr21:35897797-35897566 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 180, 74

Conread position: 3-259
Cow position: chr21:8351475-8351215 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 93, 25

Conread position: 3-260
Cow position: chr21:6102438-6102164 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 214

Conread position: 3-268
Cow position: chr21:2904631-2904373 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 145, 67

Conread position: 3-268
Cow position: chr21:28881971-28882244 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 73

Conread position: 3-276
Cow position: chr21:13488348-13488640 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 3-277
Cow position: chr21:802465-802203 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 64

Conread position: 3-277
Cow position: chr21:2367169-2367446 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 146, 72

Conread position: 3-277
Cow position: chr21:18845186-18844898 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 69, 25

Conread position: 3-277
Cow position: chr21:28442573-28442846 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 85, 164

Conread position: 3-277
Cow position: chr21:30607259-30606973 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 101, 74

Conread position: 3-277
Cow position: chr21:33210027-33210302 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 94, 166

Conread position: 3-277
Cow position: chr21:33729263-33729544 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 124, 80

Conread position: 3-277
Cow position: chr21:42540391-42540108 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 31

Conread position: 3-277
Cow position: chr21:44515103-44515378 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 135, 69

Conread position: 3-286
Cow position: chr21:28512361-28512637 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 163, 91

Conread position: 3-286
Cow position: chr21:33263678-33263967 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 17, 53

Conread position: 3-337
Cow position: chr21:42348849-42348511 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 239
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 93, 166

Conread position: 3-345
Cow position: chr21:643162-643519 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 74

Conread position: 3-353
Cow position: chr21:24858140-24858516 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 219

Conread position: 3-353
Cow position: chr21:31691307-31691681 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 93, 220

Conread position: 3-354
Cow position: chr21:33982980-33982605 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 125

Conread position: 3-355
Cow position: chr21:32559525-32559162 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 94, 51

Conread position: 3-356
Cow position: chr21:27229966-27229592 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 93, 74

Conread position: 3-365
Cow position: chr21:33350571-33350952 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 226

Conread position: 3-421
Cow position: chr21:11645140-11644711 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 95

Conread position: 3-425
Cow position: chr21:30250380-30249918 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 323
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 85, 212

Conread position: 3-433
Cow position: chr21:29214320-29213892 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 90

Conread position: 3-436
Cow position: chr21:641413-641854 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 42

Conread position: 3-437
Cow position: chr21:13365173-13365636 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 322
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 146, 74

Conread position: 3-438
Cow position: chr21:6051335-6051777 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 300
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 161, 216

Conread position: 4-199
Cow position: chr21:7132633-7132428 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 91, 109

Conread position: 4-276
Cow position: chr21:19363634-19363346 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 4-277
Cow position: chr21:10007812-10007525 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 203
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 6, 59

Conread position: 4-419
Cow position: chr21:11740301-11739866 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 299
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 81, 302

Conread position: 4-432
Cow position: chr21:37479786-37480230 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 281

Conread position: 5-267
Cow position: chr21:28989443-28989715 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 92, 72

Conread position: 5-429
Cow position: chr21:10263871-10264298 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 283
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 169, 72

Conread position: 5-432
Cow position: chr21:27569330-27568893 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 73

Conread position: 6-206
Cow position: chr21:46860270-46860065 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 144, 46

Conread position: 7-323
Cow position: chr21:2679385-2679719 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 88, 211

Conread position: 8-277
Cow position: chr21:16187971-16187693 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 150, 20

Conread position: 9-286
Cow position: chr21:15610986-15611263 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 94, 66

Conread position: 9-384
Cow position: chr21:27624547-27624929 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 259
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 87, 27

Conread position: 9-433
Cow position: chr21:44826049-44825608 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 64

Conread position: 13-286
Cow position: chr21:12801908-12801624 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 131, 82

Conread position: 14-198
Cow position: chr21:44331447-44331258 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 80, 175

Conread position: 14-432
Cow position: chr21:32297671-32297242 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 153

Conread position: 14-432
Cow position: chr21:46264016-46264457 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 305
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 137, 17

Conread position: 15-433
Cow position: chr21:41590716-41590299 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 83

Conread position: 39-273
Cow position: chr21:44733297-44733063 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 57, 100

Conread position: 39-355
Cow position: chr21:29978898-29978554 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 243
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 41, 180

Conread position: 45-204
Cow position: chr21:37355552-37355715 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 46-286
Cow position: chr21:12301632-12301388 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 50, 62

Conread position: 51-430
Cow position: chr21:30222218-30222606 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 278

Conread position: 59-277
Cow position: chr21:2657704-2657923 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 97, 71

Conread position: 62-345
Cow position: chr21:35437580-35437294 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 185
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 17

Conread position: 68-268
Cow position: chr21:9360335-9360540 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 28, 60

Conread position: 90-355
Cow position: chr21:44214039-44214321 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 74, 136

Conread position: 102-345
Cow position: chr21:47719372-47719108 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 119-355
Cow position: chr21:829258-829000 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 196

Conread position: 120-355
Cow position: chr21:674642-674878 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 34, 71

Conread position: 152-276
Cow position: chr21:297743-297867 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 152-353
Cow position: chr21:8349319-8349533 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 152-355
Cow position: chr21:28030279-28030493 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 127, 39

Conread position: 152-432
Cow position: chr21:30980587-30980293 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 115, 42

Conread position: 152-436
Cow position: chr21:47383571-47383279 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 191
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 43, 162

Conread position: 154-286
Cow position: chr21:20183064-20183194 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 159-432
Cow position: chr21:71583-71852 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 177
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 160, 134

Conread position: 160-427
Cow position: chr21:46599358-46599619 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 162, 133

Conread position: 162-437
Cow position: chr21:7394284-7394000 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 104, 34

Conread position: 171-379
Cow position: chr21:19360167-19359948 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 108, 17

Show alignments to all cow chromosomes.