Cow genome map
| Conread name: | rgul0111_e15.y1 |
| Conread position: | 1-267 |
| Cow position: | chr23:39302480-39302742 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 96, 142 |
| Conread position: | 1-358 |
| Cow position: | chr23:9599267-9599640 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 74 |
| Conread position: | 2-185 |
| Cow position: | chr23:1878106-1877911 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 2-273 |
| Cow position: | chr23:39806638-39806921 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 2-277 |
| Cow position: | chr23:11473744-11473455 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 2-277 |
| Cow position: | chr23:21452967-21452677 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 94, 78 |
| Conread position: | 2-286 |
| Cow position: | chr23:29459323-29459037 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 98 |
| Conread position: | 2-338 |
| Cow position: | chr23:26841214-26841546 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 2-387 |
| Cow position: | chr23:9268355-9268753 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 264 |
| Conread position: | 2-434 |
| Cow position: | chr23:533995-534433 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 92 |
| Conread position: | 2-435 |
| Cow position: | chr23:4579270-4578826 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 3-170 |
| Cow position: | chr23:221837-222003 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 94, 46 |
| Conread position: | 3-228 |
| Cow position: | chr23:6172895-6172664 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 3-237 |
| Cow position: | chr23:353811-353577 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 184, 91 |
| Conread position: | 3-247 |
| Cow position: | chr23:41285696-41285942 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 3-258 |
| Cow position: | chr23:18796924-18796667 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 193 |
| Conread position: | 3-273 |
| Cow position: | chr23:11845055-11845325 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 3-274 |
| Cow position: | chr23:1721220-1720933 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 3-277 |
| Cow position: | chr23:1883160-1883448 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 91 |
| Conread position: | 3-277 |
| Cow position: | chr23:5706767-5707046 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 3-277 |
| Cow position: | chr23:29034080-29034367 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 93, 259 |
| Conread position: | 3-354 |
| Cow position: | chr23:6244820-6244454 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 94, 197 |
| Conread position: | 3-355 |
| Cow position: | chr23:8063321-8063677 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 3-355 |
| Cow position: | chr23:15287367-15287002 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 201 |
| Conread position: | 3-356 |
| Cow position: | chr23:6367372-6367747 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 336 |
| Conread position: | 3-433 |
| Cow position: | chr23:8698210-8698631 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 167 |
| Conread position: | 3-437 |
| Cow position: | chr23:20744822-20744372 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 90 |
| Conread position: | 3-437 |
| Cow position: | chr23:39778180-39778607 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 151, 51 |
| Conread position: | 3-442 |
| Cow position: | chr23:344411-343961 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 201 |
| Conread position: | 4-162 |
| Cow position: | chr23:1605447-1605602 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 4-259 |
| Cow position: | chr23:16664782-16664535 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 155, 50 |
| Conread position: | 4-424 |
| Cow position: | chr23:25864916-25864497 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 147, 73 |
| Conread position: | 4-431 |
| Cow position: | chr23:29626182-29626630 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 69 |
| Conread position: | 4-435 |
| Cow position: | chr23:16881389-16880962 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 42 |
| Conread position: | 4-435 |
| Cow position: | chr23:31493646-31494077 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 145, 71 |
| Conread position: | 4-442 |
| Cow position: | chr23:11315249-11314802 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 71 |
| Conread position: | 5-276 |
| Cow position: | chr23:7845058-7845345 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 215 |
| Conread position: | 5-276 |
| Cow position: | chr23:17404619-17404891 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 145, 54 |
| Conread position: | 6-281 |
| Cow position: | chr23:8959366-8959652 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 81, 202 |
| Conread position: | 9-425 |
| Cow position: | chr23:1290067-1290504 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 86, 34 |
| Conread position: | 10-277 |
| Cow position: | chr23:29021449-29021720 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 85 |
| Conread position: | 17-226 |
| Cow position: | chr23:406380-406170 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 127, 60 |
| Conread position: | 17-277 |
| Cow position: | chr23:1489837-1490093 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 180, 50 |
| Conread position: | 17-434 |
| Cow position: | chr23:4504608-4505019 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 220 |
| Conread position: | 18-425 |
| Cow position: | chr23:2502067-2501659 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 24-358 |
| Cow position: | chr23:21764705-21765068 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 28-342 |
| Cow position: | chr23:1776839-1776511 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 68, 44 |
| Conread position: | 31-267 |
| Cow position: | chr23:24930278-24930029 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 75, 120 |
| Conread position: | 36-267 |
| Cow position: | chr23:36017942-36018193 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 188 |
| Conread position: | 40-437 |
| Cow position: | chr23:1585585-1585189 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 56-425 |
| Cow position: | chr23:3282295-3281912 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 108, 38 |
| Conread position: | 58-277 |
| Cow position: | chr23:40081349-40081565 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 67-431 |
| Cow position: | chr23:12334037-12334426 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 91-424 |
| Cow position: | chr23:12363764-12363422 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 123 |
| Conread position: | 94-273 |
| Cow position: | chr23:12470795-12470979 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 94-275 |
| Cow position: | chr23:1599378-1599573 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 117 |
| Conread position: | 94-277 |
| Cow position: | chr23:18286056-18286245 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 110-375 |
| Cow position: | chr23:16076286-16076003 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 113-432 |
| Cow position: | chr23:385423-385103 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 37, 234 |
| Conread position: | 120-355 |
| Cow position: | chr23:26824975-26825211 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 155, 74 |
| Conread position: | 124-433 |
| Cow position: | chr23:22105460-22105790 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 152-336 |
| Cow position: | chr23:16961225-16961422 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 152-382 |
| Cow position: | chr23:21440072-21439832 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 152-425 |
| Cow position: | chr23:18749136-18748878 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 152-431 |
| Cow position: | chr23:1222310-1222037 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 154-434 |
| Cow position: | chr23:40637187-40637471 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 209 |
| Conread position: | 155-353 |
| Cow position: | chr23:1863404-1863609 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 156-356 |
| Cow position: | chr23:8917741-8917530 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 160-349 |
| Cow position: | chr23:24966527-24966328 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 119, 185 |
| Conread position: | 160-355 |
| Cow position: | chr23:40995109-40995315 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 160-438 |
| Cow position: | chr23:1614721-1614446 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 133, 34 |
| Conread position: | 206-433 |
| Cow position: | chr23:4090409-4090627 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 60 |
Show alignments to all cow chromosomes.