Cow genome map
| Conread name: | rgul0111_e15.y1 |
| Conread position: | 1-200 |
| Cow position: | chr24:22193464-22193670 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-345 |
| Cow position: | chr24:29679572-29679206 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 93, 222 |
| Conread position: | 1-430 |
| Cow position: | chr24:37650409-37650851 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 74 |
| Conread position: | 1-436 |
| Cow position: | chr24:3165560-3166001 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 2-355 |
| Cow position: | chr24:211720-212092 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 8, 218 |
| Conread position: | 2-433 |
| Cow position: | chr24:28303609-28303183 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 75 |
| Conread position: | 3-162 |
| Cow position: | chr24:6956918-6957077 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-228 |
| Cow position: | chr24:11734463-11734700 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 3-276 |
| Cow position: | chr24:29063905-29063634 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 3-277 |
| Cow position: | chr24:17860510-17860232 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 73 |
| Conread position: | 3-277 |
| Cow position: | chr24:45004695-45004973 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 129 |
| Conread position: | 3-355 |
| Cow position: | chr24:1269545-1269899 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 74 |
| Conread position: | 3-355 |
| Cow position: | chr24:11886898-11887278 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 138 |
| Conread position: | 3-355 |
| Cow position: | chr24:20874417-20874802 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 3-355 |
| Cow position: | chr24:24491270-24490903 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 63 |
| Conread position: | 3-355 |
| Cow position: | chr24:27608357-27607989 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 92 |
| Conread position: | 3-379 |
| Cow position: | chr24:16556894-16556511 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 3-424 |
| Cow position: | chr24:33153523-33153972 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 314 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 153, 71 |
| Conread position: | 3-432 |
| Cow position: | chr24:43028585-43028150 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 93, 251 |
| Conread position: | 3-434 |
| Cow position: | chr24:30314295-30313849 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 194 |
| Conread position: | 3-435 |
| Cow position: | chr24:18485259-18484810 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 351 |
| Conread position: | 3-436 |
| Cow position: | chr24:3493634-3494063 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 94, 25 |
| Conread position: | 3-436 |
| Cow position: | chr24:40300896-40301342 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 3-437 |
| Cow position: | chr24:32054413-32054848 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 130, 97 |
| Conread position: | 4-277 |
| Cow position: | chr24:3430477-3430759 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 160, 58 |
| Conread position: | 4-355 |
| Cow position: | chr24:31816327-31816699 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 107 |
| Conread position: | 4-425 |
| Cow position: | chr24:39850137-39849721 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 105 |
| Conread position: | 5-277 |
| Cow position: | chr24:28319457-28319183 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 90, 66 |
| Conread position: | 5-355 |
| Cow position: | chr24:15246892-15246530 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 5-355 |
| Cow position: | chr24:17311466-17311102 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 89 |
| Conread position: | 5-355 |
| Cow position: | chr24:27844777-27844411 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 89 |
| Conread position: | 9-355 |
| Cow position: | chr24:24755196-24755556 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 128, 68 |
| Conread position: | 12-425 |
| Cow position: | chr24:30235620-30236043 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 13-264 |
| Cow position: | chr24:6487671-6487932 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 15-438 |
| Cow position: | chr24:10498963-10499402 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 301 |
| Conread position: | 28-277 |
| Cow position: | chr24:33222174-33221914 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 121, 65 |
| Conread position: | 36-276 |
| Cow position: | chr24:10012546-10012777 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 38-355 |
| Cow position: | chr24:31359098-31359440 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 58, 164 |
| Conread position: | 41-355 |
| Cow position: | chr24:39833737-39833416 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 56, 251 |
| Conread position: | 45-345 |
| Cow position: | chr24:33465818-33465515 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 52-355 |
| Cow position: | chr24:28990355-28990684 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 69-277 |
| Cow position: | chr24:30897735-30897510 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 70-276 |
| Cow position: | chr24:24061995-24061782 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 94-276 |
| Cow position: | chr24:23187086-23186894 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 94-345 |
| Cow position: | chr24:6912520-6912257 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 57 |
| Conread position: | 94-355 |
| Cow position: | chr24:18357222-18356931 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 95-277 |
| Cow position: | chr24:17492147-17492324 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 102 |
| Conread position: | 149-344 |
| Cow position: | chr24:14457823-14457618 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 152-286 |
| Cow position: | chr24:30308654-30308518 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 152-421 |
| Cow position: | chr24:39791442-39791730 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 118, 234 |
| Conread position: | 152-433 |
| Cow position: | chr24:37975078-37974804 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 153-345 |
| Cow position: | chr24:37823432-37823632 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 153-428 |
| Cow position: | chr24:28042876-28043166 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 197 |
| Conread position: | 155-353 |
| Cow position: | chr24:13948027-13948236 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 155-431 |
| Cow position: | chr24:15288726-15289004 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 156-436 |
| Cow position: | chr24:20364503-20364234 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 158-437 |
| Cow position: | chr24:27284729-27285007 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 117, 36 |
Show alignments to all cow chromosomes.