Cow genome map
| Conread name: | rgul0111_e15.y1 |
| Conread position: | 1-276 |
| Cow position: | chr25:17975606-17975331 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 167, 93 |
| Conread position: | 2-275 |
| Cow position: | chr25:10643549-10643263 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 12, 214 |
| Conread position: | 2-282 |
| Cow position: | chr25:40321531-40321234 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 94, 282 |
| Conread position: | 2-286 |
| Cow position: | chr25:20076255-20076554 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 289 |
| Conread position: | 2-286 |
| Cow position: | chr25:33256130-33256410 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 2-355 |
| Cow position: | chr25:18721343-18720983 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 148, 49 |
| Conread position: | 2-443 |
| Cow position: | chr25:8120538-8120997 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 94, 189 |
| Conread position: | 2-449 |
| Cow position: | chr25:24669669-24669234 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 329 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 147, 73 |
| Conread position: | 3-236 |
| Cow position: | chr25:8918515-8918269 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 57, 214 |
| Conread position: | 3-261 |
| Cow position: | chr25:7800899-7801173 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 3-264 |
| Cow position: | chr25:14117872-14118130 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 111, 91 |
| Conread position: | 3-267 |
| Cow position: | chr25:24452406-24452122 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 3-277 |
| Cow position: | chr25:15273453-15273721 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 3-316 |
| Cow position: | chr25:10156354-10156667 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 267, 91 |
| Conread position: | 3-323 |
| Cow position: | chr25:36037017-36036674 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 155, 91 |
| Conread position: | 3-345 |
| Cow position: | chr25:15254568-15254219 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 143, 91 |
| Conread position: | 3-345 |
| Cow position: | chr25:22531050-22531410 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 61 |
| Conread position: | 3-355 |
| Cow position: | chr25:788032-788401 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 159, 35 |
| Conread position: | 3-355 |
| Cow position: | chr25:11437039-11436680 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 146, 91 |
| Conread position: | 3-355 |
| Cow position: | chr25:12778769-12778414 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 93, 189 |
| Conread position: | 3-361 |
| Cow position: | chr25:12117223-12116856 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 3-421 |
| Cow position: | chr25:16319369-16318961 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 300 |
| Conread position: | 3-424 |
| Cow position: | chr25:19129617-19130046 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 3-431 |
| Cow position: | chr25:30279444-30278998 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 111 |
| Conread position: | 3-434 |
| Cow position: | chr25:35347667-35348108 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 93, 203 |
| Conread position: | 3-438 |
| Cow position: | chr25:3992553-3992987 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 306 |
| Conread position: | 3-439 |
| Cow position: | chr25:23829354-23828923 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 299 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 4-264 |
| Cow position: | chr25:14266740-14266483 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 147 |
| Conread position: | 4-277 |
| Cow position: | chr25:15714645-15714921 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 92, 175 |
| Conread position: | 4-345 |
| Cow position: | chr25:21193180-21192811 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 64, 251 |
| Conread position: | 4-431 |
| Cow position: | chr25:36746682-36746249 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 201 |
| Conread position: | 4-437 |
| Cow position: | chr25:22314965-22315409 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 92, 77 |
| Conread position: | 5-238 |
| Cow position: | chr25:40388692-40388455 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 5-277 |
| Cow position: | chr25:20023628-20023338 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 5-450 |
| Cow position: | chr25:20007912-20008351 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 6-424 |
| Cow position: | chr25:6683295-6682858 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 301 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 8-286 |
| Cow position: | chr25:35612529-35612256 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 150, 59 |
| Conread position: | 9-345 |
| Cow position: | chr25:38957741-38958082 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 13-277 |
| Cow position: | chr25:6961377-6961105 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 145, 42 |
| Conread position: | 13-353 |
| Cow position: | chr25:20785811-20785452 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 137, 81 |
| Conread position: | 13-431 |
| Cow position: | chr25:34169727-34170168 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 301 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 151, 80 |
| Conread position: | 14-277 |
| Cow position: | chr25:35826499-35826237 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 17-436 |
| Cow position: | chr25:7007693-7008127 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 50 |
| Conread position: | 17-436 |
| Cow position: | chr25:19478465-19478894 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 122 |
| Conread position: | 36-277 |
| Cow position: | chr25:16714478-16714221 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 92, 61 |
| Conread position: | 39-345 |
| Cow position: | chr25:2624604-2624924 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 57, 177 |
| Conread position: | 39-355 |
| Cow position: | chr25:22178720-22179054 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 46-355 |
| Cow position: | chr25:7750256-7750593 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 47-200 |
| Cow position: | chr25:32453591-32453426 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 160 |
| Conread position: | 47-274 |
| Cow position: | chr25:14720559-14720789 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 54-356 |
| Cow position: | chr25:4681047-4681350 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 42, 169 |
| Conread position: | 57-355 |
| Cow position: | chr25:17190927-17190610 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 34, 130 |
| Conread position: | 78-227 |
| Cow position: | chr25:4860468-4860313 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 80-297 |
| Cow position: | chr25:17991747-17991518 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 129 |
| Conread position: | 93-432 |
| Cow position: | chr25:12609197-12609553 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 56, 245 |
| Conread position: | 101-339 |
| Cow position: | chr25:4245550-4245791 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 107, 65 |
| Conread position: | 102-286 |
| Cow position: | chr25:24051824-24052023 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 104-434 |
| Cow position: | chr25:20523367-20523036 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 106-275 |
| Cow position: | chr25:12510144-12509965 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 152-277 |
| Cow position: | chr25:26642509-26642635 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 152-421 |
| Cow position: | chr25:19364135-19363871 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 152-435 |
| Cow position: | chr25:11051453-11051725 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 105 |
| Conread position: | 153-432 |
| Cow position: | chr25:22261372-22261084 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 126, 21 |
| Conread position: | 156-355 |
| Cow position: | chr25:32277664-32277470 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 157-419 |
| Cow position: | chr25:26306276-26306016 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 151, 186 |
| Conread position: | 158-432 |
| Cow position: | chr25:12195286-12195020 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 160-355 |
| Cow position: | chr25:23245069-23244860 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 35 |
| Conread position: | 161-436 |
| Cow position: | chr25:1840255-1840525 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 43, 145 |
| Conread position: | 190-425 |
| Cow position: | chr25:19584325-19584562 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 90 |
Show alignments to all cow chromosomes.