Cow genome map
| Conread name: | rgul0111_e15.y1 |
| Conread position: | 1-286 |
| Cow position: | chr27:11296451-11296167 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 156, 105 |
| Conread position: | 1-297 |
| Cow position: | chr27:2930403-2930703 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 126, 81 |
| Conread position: | 1-438 |
| Cow position: | chr27:10980057-10979608 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 96, 197 |
| Conread position: | 2-225 |
| Cow position: | chr27:15858898-15859131 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 149, 91 |
| Conread position: | 2-277 |
| Cow position: | chr27:20641153-20641429 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 2-277 |
| Cow position: | chr27:24014548-24014833 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 146, 86 |
| Conread position: | 2-345 |
| Cow position: | chr27:26864926-26865284 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 68 |
| Conread position: | 2-353 |
| Cow position: | chr27:28518478-28518113 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 130, 75 |
| Conread position: | 2-378 |
| Cow position: | chr27:6074109-6073735 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 154, 74 |
| Conread position: | 2-430 |
| Cow position: | chr27:29493724-29494142 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 220, 74 |
| Conread position: | 2-439 |
| Cow position: | chr27:26424394-26424829 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 3-237 |
| Cow position: | chr27:27528170-27528409 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 145, 91 |
| Conread position: | 3-245 |
| Cow position: | chr27:16238081-16237847 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 156, 40 |
| Conread position: | 3-251 |
| Cow position: | chr27:27449243-27449502 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 93, 70 |
| Conread position: | 3-267 |
| Cow position: | chr27:536648-536379 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 155, 25 |
| Conread position: | 3-276 |
| Cow position: | chr27:815556-815269 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 93, 66 |
| Conread position: | 3-277 |
| Cow position: | chr27:4835416-4835700 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 3-277 |
| Cow position: | chr27:16284664-16284381 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 3-277 |
| Cow position: | chr27:20553908-20553638 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 142, 74 |
| Conread position: | 3-327 |
| Cow position: | chr27:1498505-1498160 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 3-341 |
| Cow position: | chr27:26239215-26238852 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 162, 29 |
| Conread position: | 3-345 |
| Cow position: | chr27:26643864-26643515 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 94, 45 |
| Conread position: | 3-346 |
| Cow position: | chr27:24738610-24738964 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 95, 57 |
| Conread position: | 3-351 |
| Cow position: | chr27:21668934-21669297 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 3-354 |
| Cow position: | chr27:19685523-19685901 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 89 |
| Conread position: | 3-355 |
| Cow position: | chr27:22171489-22171112 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 13 |
| Conread position: | 3-355 |
| Cow position: | chr27:26959429-26959804 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 161, 60 |
| Conread position: | 3-407 |
| Cow position: | chr27:20067787-20068196 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 298 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 93, 54 |
| Conread position: | 3-432 |
| Cow position: | chr27:7412574-7412148 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 312 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 93, 192 |
| Conread position: | 3-432 |
| Cow position: | chr27:16705438-16705007 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 125, 91 |
| Conread position: | 3-432 |
| Cow position: | chr27:22220745-22220304 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 210 |
| Conread position: | 3-437 |
| Cow position: | chr27:29799135-29798701 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 103, 72 |
| Conread position: | 3-437 |
| Cow position: | chr27:30890478-30890050 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 4-225 |
| Cow position: | chr27:30856201-30856426 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 158, 49 |
| Conread position: | 4-275 |
| Cow position: | chr27:26151210-26150926 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 4-372 |
| Cow position: | chr27:22179605-22179964 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 4-437 |
| Cow position: | chr27:14670190-14670631 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 302 |
| Conread position: | 4-437 |
| Cow position: | chr27:19388209-19387767 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 264 |
| Conread position: | 5-340 |
| Cow position: | chr27:4673210-4672842 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 5-425 |
| Cow position: | chr27:299194-299613 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 292 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 90, 200 |
| Conread position: | 5-432 |
| Cow position: | chr27:26433623-26434059 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 289 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 5-434 |
| Cow position: | chr27:20629221-20628811 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 273, 49 |
| Conread position: | 13-425 |
| Cow position: | chr27:19718105-19717659 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 13-433 |
| Cow position: | chr27:15454393-15453966 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 263 |
| Conread position: | 14-392 |
| Cow position: | chr27:20757875-20758256 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 23-430 |
| Cow position: | chr27:28496203-28496614 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 69, 264 |
| Conread position: | 23-433 |
| Cow position: | chr27:15408872-15409272 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 71 |
| Conread position: | 28-277 |
| Cow position: | chr27:27613472-27613713 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 30-435 |
| Cow position: | chr27:7212548-7212979 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 231 |
| Conread position: | 31-355 |
| Cow position: | chr27:4944365-4944696 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 91 |
| Conread position: | 36-425 |
| Cow position: | chr27:11480471-11480877 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 96, 52 |
| Conread position: | 40-277 |
| Cow position: | chr27:22513520-22513771 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 178 |
| Conread position: | 53-277 |
| Cow position: | chr27:21213909-21213694 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 54-417 |
| Cow position: | chr27:435376-435001 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 110, 176 |
| Conread position: | 54-425 |
| Cow position: | chr27:17331643-17331253 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 42, 270 |
| Conread position: | 54-434 |
| Cow position: | chr27:16589572-16589971 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 114 |
| Conread position: | 62-360 |
| Cow position: | chr27:16103936-16103624 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 91, 15 |
| Conread position: | 67-277 |
| Cow position: | chr27:8405711-8405916 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 91-355 |
| Cow position: | chr27:20481273-20481546 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 94-301 |
| Cow position: | chr27:16625998-16625772 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 94-437 |
| Cow position: | chr27:23594417-23594068 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 118 |
| Conread position: | 102-277 |
| Cow position: | chr27:23511083-23510893 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 102-355 |
| Cow position: | chr27:20092745-20093003 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 199 |
| Conread position: | 152-415 |
| Cow position: | chr27:27694742-27695004 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 153-415 |
| Cow position: | chr27:23107873-23108131 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 91 |
| Conread position: | 153-451 |
| Cow position: | chr27:15378448-15378744 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 147 |
| Conread position: | 154-354 |
| Cow position: | chr27:23560003-23560214 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 122, 49 |
| Conread position: | 166-430 |
| Cow position: | chr27:19509030-19508768 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 19 |
Show alignments to all cow chromosomes.