Cow genome map
| Conread name: | rgul0111_e15.y1 |
| Conread position: | 1-268 |
| Cow position: | chr29:35459008-35458732 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 134, 8 |
| Conread position: | 1-276 |
| Cow position: | chr29:465640-465352 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 199 |
| Conread position: | 1-276 |
| Cow position: | chr29:18085352-18085619 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 142 |
| Conread position: | 1-436 |
| Cow position: | chr29:32733092-32733507 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 287, 66 |
| Conread position: | 2-277 |
| Cow position: | chr29:11136126-11135848 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 2-353 |
| Cow position: | chr29:35501886-35501520 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 183, 91 |
| Conread position: | 2-433 |
| Cow position: | chr29:12679917-12680360 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 205 |
| Conread position: | 3-241 |
| Cow position: | chr29:7408125-7407873 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 205 |
| Conread position: | 3-275 |
| Cow position: | chr29:17607180-17607464 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 3-277 |
| Cow position: | chr29:24578640-24578911 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 119 |
| Conread position: | 3-277 |
| Cow position: | chr29:40166006-40166292 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 58 |
| Conread position: | 3-345 |
| Cow position: | chr29:17109735-17110086 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 181, 78 |
| Conread position: | 3-345 |
| Cow position: | chr29:22162487-22162132 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 90 |
| Conread position: | 3-355 |
| Cow position: | chr29:10058763-10058395 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 3-355 |
| Cow position: | chr29:36530627-36531011 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 206 |
| Conread position: | 3-432 |
| Cow position: | chr29:11562378-11562827 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 146, 193 |
| Conread position: | 3-433 |
| Cow position: | chr29:26778648-26779078 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 94, 251 |
| Conread position: | 3-434 |
| Cow position: | chr29:2623716-2623277 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 210 |
| Conread position: | 3-437 |
| Cow position: | chr29:8926695-8926244 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 389 |
| Conread position: | 3-437 |
| Cow position: | chr29:34773964-34773543 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 163, 53 |
| Conread position: | 3-438 |
| Cow position: | chr29:30367259-30366848 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 240, 33 |
| Conread position: | 4-355 |
| Cow position: | chr29:31594350-31594012 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 150, 65 |
| Conread position: | 4-429 |
| Cow position: | chr29:5892611-5893044 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 109 |
| Conread position: | 5-439 |
| Cow position: | chr29:19762038-19762471 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 210 |
| Conread position: | 6-276 |
| Cow position: | chr29:19254056-19253782 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 88 |
| Conread position: | 6-277 |
| Cow position: | chr29:45005852-45005581 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 91, 55 |
| Conread position: | 6-355 |
| Cow position: | chr29:40117335-40117710 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 91, 102 |
| Conread position: | 8-276 |
| Cow position: | chr29:29974810-29975085 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 9-430 |
| Cow position: | chr29:1325205-1325645 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 303 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 9, 117 |
| Conread position: | 9-432 |
| Cow position: | chr29:4480406-4479966 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 202 |
| Conread position: | 16-421 |
| Cow position: | chr29:40096733-40097171 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 79, 208 |
| Conread position: | 16-445 |
| Cow position: | chr29:23155027-23155449 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 136 |
| Conread position: | 17-162 |
| Cow position: | chr29:8125817-8125669 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 22-316 |
| Cow position: | chr29:28446477-28446158 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 69, 230 |
| Conread position: | 28-234 |
| Cow position: | chr29:8190673-8190461 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 69, 83 |
| Conread position: | 28-338 |
| Cow position: | chr29:42570058-42570357 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 36-433 |
| Cow position: | chr29:36209961-36210352 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 167, 57 |
| Conread position: | 40-275 |
| Cow position: | chr29:3100461-3100221 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 40-434 |
| Cow position: | chr29:25091910-25092308 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 41-432 |
| Cow position: | chr29:19125145-19125531 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 50-434 |
| Cow position: | chr29:11646914-11647317 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 109, 27 |
| Conread position: | 51-434 |
| Cow position: | chr29:39329786-39329380 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 55, 265 |
| Conread position: | 54-355 |
| Cow position: | chr29:22029120-22028816 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 130, 20 |
| Conread position: | 57-277 |
| Cow position: | chr29:12900734-12900503 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 27 |
| Conread position: | 59-385 |
| Cow position: | chr29:23244064-23243710 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 174 |
| Conread position: | 78-286 |
| Cow position: | chr29:31674465-31674690 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 92-416 |
| Cow position: | chr29:31943732-31944053 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 246, 72 |
| Conread position: | 93-345 |
| Cow position: | chr29:29314802-29314531 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 97-354 |
| Cow position: | chr29:16011794-16011535 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 103-334 |
| Cow position: | chr29:4002759-4003010 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 130-354 |
| Cow position: | chr29:7624074-7624312 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 152-276 |
| Cow position: | chr29:18012480-18012605 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 152-434 |
| Cow position: | chr29:23220576-23220287 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 127, 172 |
| Conread position: | 152-434 |
| Cow position: | chr29:28840079-28840376 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 153-417 |
| Cow position: | chr29:29324487-29324234 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 154-355 |
| Cow position: | chr29:36952372-36952167 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 152 |
| Conread position: | 155-430 |
| Cow position: | chr29:30548702-30548973 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 163, 133 |
| Conread position: | 159-354 |
| Cow position: | chr29:29923643-29923432 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 159-355 |
| Cow position: | chr29:32176612-32176813 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 120, 49 |
| Conread position: | 160-344 |
| Cow position: | chr29:38978463-38978661 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 160-430 |
| Cow position: | chr29:44139312-44139046 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 148, 135 |
Show alignments to all cow chromosomes.