Cow genome map

Conread name: rgul0111_e15.y1

Conread position: 1-263
Cow position: chr6:46245520-46245260 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 95, 182

Conread position: 1-264
Cow position: chr6:9751238-9750977 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 7, 77

Conread position: 1-277
Cow position: chr6:1770392-1770108 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 105, 41

Conread position: 1-277
Cow position: chr6:48281798-48282082 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 63, 93

Conread position: 1-417
Cow position: chr6:54132621-54133038 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 40

Conread position: 2-277
Cow position: chr6:130361-130073 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 258

Conread position: 2-277
Cow position: chr6:26728723-26728442 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 94, 59

Conread position: 2-355
Cow position: chr6:4383296-4383660 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 143, 73

Conread position: 2-355
Cow position: chr6:45690790-45690429 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 176

Conread position: 2-355
Cow position: chr6:52478624-52478225 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 2-436
Cow position: chr6:32287424-32287877 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 318
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 60, 26

Conread position: 2-437
Cow position: chr6:31535767-31535326 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 206

Conread position: 3-238
Cow position: chr6:58172990-58173236 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 100, 23

Conread position: 3-240
Cow position: chr6:60456635-60456882 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 46, 106

Conread position: 3-276
Cow position: chr6:21231341-21231613 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 78

Conread position: 3-276
Cow position: chr6:31525853-31526135 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 202

Conread position: 3-277
Cow position: chr6:23248158-23247876 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 252

Conread position: 3-277
Cow position: chr6:28977224-28976950 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 139, 74

Conread position: 3-278
Cow position: chr6:19681719-19681434 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 93, 46

Conread position: 3-338
Cow position: chr6:8965895-8966261 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 93, 13

Conread position: 3-344
Cow position: chr6:32121716-32122068 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 90

Conread position: 3-345
Cow position: chr6:222635-222289 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 243
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 115

Conread position: 3-353
Cow position: chr6:13688006-13687636 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 79

Conread position: 3-355
Cow position: chr6:24031180-24031549 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 327

Conread position: 3-355
Cow position: chr6:46860363-46859984 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 216

Conread position: 3-364
Cow position: chr6:11192647-11192283 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 246
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 69, 147

Conread position: 3-387
Cow position: chr6:8209784-8209393 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 91

Conread position: 3-424
Cow position: chr6:6400753-6401199 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 396

Conread position: 3-424
Cow position: chr6:7128597-7128170 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 284
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 39, 76

Conread position: 3-425
Cow position: chr6:5609635-5609207 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 85

Conread position: 3-425
Cow position: chr6:21869840-21869393 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 306
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 145, 85

Conread position: 3-429
Cow position: chr6:44194740-44194317 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 71

Conread position: 3-431
Cow position: chr6:38440987-38441421 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 296
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 94, 73

Conread position: 3-432
Cow position: chr6:15242639-15243081 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 292
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 44

Conread position: 3-433
Cow position: chr6:56849823-56850260 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 298
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 94, 64

Conread position: 3-434
Cow position: chr6:36202633-36203065 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 73

Conread position: 3-435
Cow position: chr6:7131066-7130616 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 304
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 146, 69

Conread position: 3-435
Cow position: chr6:17414646-17414205 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 58

Conread position: 3-436
Cow position: chr6:36196019-36196448 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 307
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 94, 73

Conread position: 3-437
Cow position: chr6:51581453-51581008 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 341

Conread position: 3-437
Cow position: chr6:53460767-53460324 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 91

Conread position: 3-438
Cow position: chr6:53024993-53024563 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 300
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 98

Conread position: 4-231
Cow position: chr6:59277134-59276906 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 93, 26

Conread position: 4-277
Cow position: chr6:24961951-24962235 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 200

Conread position: 4-432
Cow position: chr6:47519852-47520296 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 140

Conread position: 4-435
Cow position: chr6:13040259-13040698 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 165

Conread position: 4-436
Cow position: chr6:64431745-64432179 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 291
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 146, 90

Conread position: 4-440
Cow position: chr6:29484897-29485333 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 5-277
Cow position: chr6:38218479-38218756 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 92, 72

Conread position: 5-434
Cow position: chr6:61269137-61269561 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 290
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 85, 56

Conread position: 5-439
Cow position: chr6:46465635-46466070 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 83

Conread position: 6-264
Cow position: chr6:33865286-33865040 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 199
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 90, 6

Conread position: 6-268
Cow position: chr6:1889277-1889008 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 179
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 89, 193

Conread position: 6-276
Cow position: chr6:9452965-9452681 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 90, 0

Conread position: 6-378
Cow position: chr6:20098156-20097759 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 88

Conread position: 6-425
Cow position: chr6:9736835-9736410 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 301
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 8, 81

Conread position: 9-277
Cow position: chr6:1944537-1944803 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 82

Conread position: 12-267
Cow position: chr6:49410875-49410617 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 55

Conread position: 13-218
Cow position: chr6:37246615-37246397 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 83, 0

Conread position: 13-268
Cow position: chr6:35613599-35613337 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 136, 81

Conread position: 13-331
Cow position: chr6:528462-528139 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 84, 120

Conread position: 14-436
Cow position: chr6:15305398-15305817 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 59

Conread position: 20-268
Cow position: chr6:1499460-1499724 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 77, 208

Conread position: 23-264
Cow position: chr6:8125157-8125403 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 104, 54

Conread position: 28-431
Cow position: chr6:47355654-47356067 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 282
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 130, 65

Conread position: 36-276
Cow position: chr6:12543095-12542841 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 122, 57

Conread position: 36-431
Cow position: chr6:15243089-15243502 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 293
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 27, 174

Conread position: 38-355
Cow position: chr6:48112044-48112382 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 262
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 124, 39

Conread position: 39-277
Cow position: chr6:6965542-6965308 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 119, 12

Conread position: 40-268
Cow position: chr6:58590116-58590354 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 42-277
Cow position: chr6:61608351-61608602 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 164

Conread position: 47-355
Cow position: chr6:58370593-58370933 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 236
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 20

Conread position: 50-437
Cow position: chr6:46283146-46282745 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 43

Conread position: 57-276
Cow position: chr6:47833259-47833032 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 154

Conread position: 70-277
Cow position: chr6:12829354-12829135 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 40

Conread position: 74-343
Cow position: chr6:7119736-7119450 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 6, 132

Conread position: 80-315
Cow position: chr6:50975936-50976187 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 28, 115

Conread position: 80-436
Cow position: chr6:25615222-25614844 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 27

Conread position: 90-339
Cow position: chr6:61524310-61524040 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 68, 107

Conread position: 96-276
Cow position: chr6:50639205-50639392 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 105, 82

Conread position: 120-345
Cow position: chr6:23466108-23465862 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 133-438
Cow position: chr6:49437278-49437579 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 205
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 24, 63

Conread position: 151-277
Cow position: chr6:32853152-32853277 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 32

Conread position: 151-425
Cow position: chr6:60266216-60265933 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 119, 50

Conread position: 152-432
Cow position: chr6:18118085-18117807 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 42, 104

Conread position: 152-433
Cow position: chr6:60468204-60468474 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 115, 50

Conread position: 152-437
Cow position: chr6:2078853-2078569 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 188
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 165

Conread position: 152-437
Cow position: chr6:3350986-3351275 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 148

Conread position: 152-442
Cow position: chr6:22985891-22985610 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 35, 170

Conread position: 156-275
Cow position: chr6:12197148-12197268 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 156-355
Cow position: chr6:10106010-10105794 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 37, 46

Conread position: 159-277
Cow position: chr6:62056586-62056704 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 161-425
Cow position: chr6:50504429-50504691 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 143

Conread position: 181-425
Cow position: chr6:57320588-57320363 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 126, 13

Conread position: 188-431
Cow position: chr6:29775623-29775859 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 100

Show alignments to all cow chromosomes.