Cow genome map

Conread name: rgul0111_e15.y1

Conread position: 1-277
Cow position: chr9:19539363-19539079 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 96, 205

Conread position: 1-297
Cow position: chr9:53257794-53258096 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 129, 81

Conread position: 1-353
Cow position: chr9:11299431-11299788 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 27

Conread position: 1-436
Cow position: chr9:26278907-26279350 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 316
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 95, 194

Conread position: 2-276
Cow position: chr9:35850164-35849884 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 162, 91

Conread position: 2-277
Cow position: chr9:36445887-36445599 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 138, 41

Conread position: 2-277
Cow position: chr9:36827390-36827114 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 156, 62

Conread position: 2-278
Cow position: chr9:5218914-5219194 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 93, 100

Conread position: 2-287
Cow position: chr9:18419429-18419152 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 238, 49

Conread position: 2-425
Cow position: chr9:17871842-17872273 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 75

Conread position: 2-434
Cow position: chr9:26344719-26345137 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 294
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 93, 63

Conread position: 2-435
Cow position: chr9:19068063-19067593 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 220

Conread position: 3-147
Cow position: chr9:58131460-58131607 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 125
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 3-162
Cow position: chr9:18072854-18073008 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 131
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 3-205
Cow position: chr9:5319893-5319682 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 153, 87

Conread position: 3-222
Cow position: chr9:49404017-49403793 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 40

Conread position: 3-241
Cow position: chr9:49689200-49688971 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 93, 72

Conread position: 3-264
Cow position: chr9:9624764-9625022 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 91, 51

Conread position: 3-264
Cow position: chr9:62657056-62656796 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 140, 64

Conread position: 3-276
Cow position: chr9:64344755-64345017 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 190
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 126, 49

Conread position: 3-277
Cow position: chr9:5161802-5162071 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 128, 90

Conread position: 3-277
Cow position: chr9:9402921-9403194 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 144, 42

Conread position: 3-277
Cow position: chr9:23430878-23431167 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 93, 210

Conread position: 3-277
Cow position: chr9:43207115-43207395 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 93, 33

Conread position: 3-355
Cow position: chr9:18381123-18380751 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 122, 85

Conread position: 3-355
Cow position: chr9:20848200-20847824 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 3-355
Cow position: chr9:57896861-57897220 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 250
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 163, 69

Conread position: 3-364
Cow position: chr9:6952354-6951981 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 16

Conread position: 3-381
Cow position: chr9:7634531-7634136 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 284
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 147, 66

Conread position: 3-425
Cow position: chr9:34287058-34286632 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 51

Conread position: 3-437
Cow position: chr9:8636916-8636500 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 287
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 290, 90

Conread position: 3-437
Cow position: chr9:15805657-15806104 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 302
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 94, 139

Conread position: 3-437
Cow position: chr9:20091302-20090882 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 25

Conread position: 3-437
Cow position: chr9:23541154-23541578 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 280
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 218, 73

Conread position: 3-441
Cow position: chr9:34689348-34689788 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 307
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 144, 51

Conread position: 3-445
Cow position: chr9:33218688-33219145 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 310
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 93, 72

Conread position: 4-345
Cow position: chr9:17740681-17741044 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 201

Conread position: 4-345
Cow position: chr9:34957788-34958155 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 343

Conread position: 4-410
Cow position: chr9:23388415-23388831 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 294
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 91, 67

Conread position: 4-430
Cow position: chr9:45285268-45285710 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 68

Conread position: 4-431
Cow position: chr9:44831792-44832247 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 84

Conread position: 4-433
Cow position: chr9:18342985-18342540 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 309
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 140, 13

Conread position: 5-342
Cow position: chr9:21459895-21460250 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 60, 89

Conread position: 5-436
Cow position: chr9:34374667-34375103 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 53

Conread position: 5-438
Cow position: chr9:24887462-24887026 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 35

Conread position: 9-277
Cow position: chr9:34742470-34742745 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 145, 190

Conread position: 9-344
Cow position: chr9:31078824-31079180 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 75

Conread position: 13-358
Cow position: chr9:51204979-51204623 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 299

Conread position: 13-379
Cow position: chr9:59386523-59386893 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 246
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 97, 64

Conread position: 14-206
Cow position: chr9:3924869-3924674 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 137, 62

Conread position: 18-409
Cow position: chr9:33119633-33120042 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 328

Conread position: 21-170
Cow position: chr9:31823155-31823304 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 145

Conread position: 28-277
Cow position: chr9:33823337-33823097 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 168, 65

Conread position: 28-277
Cow position: chr9:44921167-44921414 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 61

Conread position: 28-355
Cow position: chr9:43757762-43757424 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 260
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 130, 49

Conread position: 29-231
Cow position: chr9:5238634-5238421 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 67, 0

Conread position: 31-241
Cow position: chr9:59507317-59507104 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 74, 44

Conread position: 36-433
Cow position: chr9:4267749-4268177 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 155

Conread position: 45-265
Cow position: chr9:8317240-8317460 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 146

Conread position: 46-434
Cow position: chr9:48628251-48627848 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 6

Conread position: 47-292
Cow position: chr9:44833745-44833999 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 170
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 72, 58

Conread position: 51-256
Cow position: chr9:30195429-30195214 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 45, 162

Conread position: 57-316
Cow position: chr9:62907836-62908090 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 218, 37

Conread position: 57-433
Cow position: chr9:61303217-61302829 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 269
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 39, 263

Conread position: 70-276
Cow position: chr9:60027392-60027177 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 79, 20

Conread position: 71-355
Cow position: chr9:4340970-4341273 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 112

Conread position: 78-355
Cow position: chr9:41728448-41728143 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 15, 43

Conread position: 80-352
Cow position: chr9:19555565-19555265 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 15, 0

Conread position: 94-431
Cow position: chr9:25557139-25556811 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 229
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 68, 204

Conread position: 99-274
Cow position: chr9:54493293-54493117 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 103-278
Cow position: chr9:49292981-49293165 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 93

Conread position: 110-344
Cow position: chr9:5077563-5077806 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 130

Conread position: 113-345
Cow position: chr9:39011322-39011569 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 77

Conread position: 152-355
Cow position: chr9:6596133-6596342 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 127, 49

Conread position: 152-437
Cow position: chr9:33584581-33584862 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 189
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 74

Conread position: 160-443
Cow position: chr9:17840581-17840861 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 36, 183

Show alignments to all cow chromosomes.