Cow genome map

Conread name: rgul0111_e15.y1

Conread position: 1-192
Cow position: chrX:27514658-27514863 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 0

Conread position: 1-277
Cow position: chrX:7646048-7646328 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 77

Conread position: 1-277
Cow position: chrX:11073400-11073114 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 5, 72

Conread position: 1-277
Cow position: chrX:15814887-15815161 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 157, 62

Conread position: 1-277
Cow position: chrX:34543577-34543861 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 94, 44

Conread position: 1-427
Cow position: chrX:17794775-17795205 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 92

Conread position: 1-438
Cow position: chrX:6544046-6544482 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 74

Conread position: 1-439
Cow position: chrX:4996401-4996827 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 278
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 274, 26

Conread position: 2-277
Cow position: chrX:9041439-9041167 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 75, 81

Conread position: 2-277
Cow position: chrX:11082823-11082545 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 157, 91

Conread position: 2-297
Cow position: chrX:20887854-20887543 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 211
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 122, 53

Conread position: 2-436
Cow position: chrX:34376747-34377174 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 293
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 149, 38

Conread position: 2-437
Cow position: chrX:878581-878114 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 34

Conread position: 2-437
Cow position: chrX:37072196-37072622 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 58

Conread position: 3-170
Cow position: chrX:8070908-8070738 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 93, 15

Conread position: 3-196
Cow position: chrX:31745255-31745063 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 69, 119

Conread position: 3-200
Cow position: chrX:40567391-40567604 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 94, 208

Conread position: 3-202
Cow position: chrX:42086653-42086864 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 93, 129

Conread position: 3-222
Cow position: chrX:20582822-20583044 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 156, 87

Conread position: 3-264
Cow position: chrX:7508932-7509207 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 93, 9

Conread position: 3-267
Cow position: chrX:22624273-22624543 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 93, 37

Conread position: 3-277
Cow position: chrX:7571698-7571982 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 155, 90

Conread position: 3-277
Cow position: chrX:32623374-32623648 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 145

Conread position: 3-286
Cow position: chrX:37574648-37574926 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 145, 72

Conread position: 3-336
Cow position: chrX:678776-678426 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 265
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 93, 110

Conread position: 3-344
Cow position: chrX:31436273-31436631 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 263
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 75

Conread position: 3-344
Cow position: chrX:35388114-35387769 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 253
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 93, 204

Conread position: 3-345
Cow position: chrX:619216-618852 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 3-345
Cow position: chrX:23091673-23092027 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 91

Conread position: 3-349
Cow position: chrX:41884626-41884250 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 3-353
Cow position: chrX:42381308-42380945 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 257
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 122, 93

Conread position: 3-354
Cow position: chrX:6413838-6414208 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 117, 44

Conread position: 3-361
Cow position: chrX:34532320-34532681 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 72

Conread position: 3-427
Cow position: chrX:40269268-40269734 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 3-430
Cow position: chrX:6488379-6488792 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 286
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 87, 9

Conread position: 3-431
Cow position: chrX:27394222-27393788 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 299
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 163, 74

Conread position: 3-433
Cow position: chrX:29542427-29541996 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 72

Conread position: 3-433
Cow position: chrX:34411631-34412080 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 115

Conread position: 3-435
Cow position: chrX:40557884-40557424 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 313
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 139, 64

Conread position: 3-437
Cow position: chrX:1465979-1466399 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 104

Conread position: 3-437
Cow position: chrX:12980039-12979599 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 319

Conread position: 3-437
Cow position: chrX:13912872-13913311 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 85

Conread position: 3-437
Cow position: chrX:38852988-38853447 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 74

Conread position: 3-439
Cow position: chrX:22074592-22075033 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 73

Conread position: 4-268
Cow position: chrX:26876089-26875813 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 92, 19

Conread position: 4-276
Cow position: chrX:4826035-4825756 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 93, 70

Conread position: 4-277
Cow position: chrX:27680194-27680475 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 145, 87

Conread position: 4-343
Cow position: chrX:24424595-24424245 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 162, 85

Conread position: 4-355
Cow position: chrX:14884169-14883782 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 4-436
Cow position: chrX:7695552-7695998 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 315
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 124, 63

Conread position: 4-449
Cow position: chrX:31443029-31442591 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 90

Conread position: 5-268
Cow position: chrX:31250183-31250456 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 98, 113

Conread position: 5-277
Cow position: chrX:16996300-16996569 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 122, 77

Conread position: 5-436
Cow position: chrX:38642051-38642477 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 151

Conread position: 6-344
Cow position: chrX:9635386-9635037 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 248
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 144, 87

Conread position: 6-443
Cow position: chrX:22482894-22482446 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 352

Conread position: 9-451
Cow position: chrX:37781320-37780863 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 304

Conread position: 13-379
Cow position: chrX:17725776-17726170 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 80

Conread position: 14-438
Cow position: chrX:33000706-33001135 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 293
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 150, 94

Conread position: 17-277
Cow position: chrX:11939121-11938856 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 59, 76

Conread position: 21-267
Cow position: chrX:23785463-23785714 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 76, 182

Conread position: 21-277
Cow position: chrX:47362802-47362546 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 51, 73

Conread position: 28-170
Cow position: chrX:31256684-31256825 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 136, 70

Conread position: 28-277
Cow position: chrX:36067836-36068092 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 130, 65

Conread position: 29-437
Cow position: chrX:32820847-32821276 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 296
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 93, 9

Conread position: 32-274
Cow position: chrX:13785537-13785286 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 116, 37

Conread position: 37-437
Cow position: chrX:27145449-27145835 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 53

Conread position: 46-355
Cow position: chrX:14275901-14275573 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 51, 18

Conread position: 50-355
Cow position: chrX:20584157-20584487 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 38, 285

Conread position: 55-430
Cow position: chrX:25208003-25207632 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 251
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 38, 126

Conread position: 68-276
Cow position: chrX:38066597-38066379 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 28, 117

Conread position: 71-277
Cow position: chrX:5919352-5919569 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 135

Conread position: 71-353
Cow position: chrX:41870933-41871232 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 77, 23

Conread position: 77-438
Cow position: chrX:616400-616002 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 279
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 150

Conread position: 80-330
Cow position: chrX:37986098-37986366 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 162

Conread position: 81-286
Cow position: chrX:2523789-2523596 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 81-437
Cow position: chrX:34315396-34315763 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 243
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 77, 16

Conread position: 83-434
Cow position: chrX:40685463-40685096 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 257
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 12, 223

Conread position: 94-343
Cow position: chrX:43115033-43115306 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 174

Conread position: 95-436
Cow position: chrX:26881685-26881327 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 63, 263

Conread position: 98-436
Cow position: chrX:42927933-42927595 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 235
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 103

Conread position: 103-434
Cow position: chrX:29229901-29230240 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 216
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 113-425
Cow position: chrX:10516157-10516478 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 214
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 100

Conread position: 116-355
Cow position: chrX:34837150-34836896 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 78

Conread position: 133-277
Cow position: chrX:27306388-27306531 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 7

Conread position: 152-355
Cow position: chrX:29050201-29050418 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 152-436
Cow position: chrX:22393032-22392753 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 162, 141

Conread position: 152-449
Cow position: chrX:38654478-38654181 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 202
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 36, 43

Conread position: 153-286
Cow position: chrX:46429867-46429733 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 154-435
Cow position: chrX:6599828-6599540 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 124, 229

Conread position: 155-344
Cow position: chrX:11326143-11325946 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 157-431
Cow position: chrX:19394511-19394785 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 113, 44

Conread position: 162-425
Cow position: chrX:40532080-40531802 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 114, 39

Conread position: 195-435
Cow position: chrX:2935952-2936187 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 113, 119

Show alignments to all cow chromosomes.