Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-125 |
| Cow position: | chr11:58537501-58537630 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-202 |
| Cow position: | chr11:3160901-3161105 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 8-133 |
| Cow position: | chr11:6575382-6575256 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 78 |
| Conread position: | 12-162 |
| Cow position: | chr11:38679953-38679807 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 12-201 |
| Cow position: | chr11:76599843-76600037 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 88 |
| Conread position: | 221-511 |
| Cow position: | chr11:9224564-9224866 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 33, 281 |
| Conread position: | 232-537 |
| Cow position: | chr11:29232042-29232357 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 235 |
| Conread position: | 233-411 |
| Cow position: | chr11:44490649-44490829 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 120 |
| Conread position: | 233-537 |
| Cow position: | chr11:3856189-3855891 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 85 |
| Conread position: | 244-401 |
| Cow position: | chr11:32982869-32983031 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 154 |
| Conread position: | 244-545 |
| Cow position: | chr11:42311483-42311792 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 58, 219 |
| Conread position: | 245-541 |
| Cow position: | chr11:47759321-47759630 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 108 |
| Conread position: | 246-359 |
| Cow position: | chr11:1495075-1495190 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-375 |
| Cow position: | chr11:26074012-26074140 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 51, 113 |
| Conread position: | 246-473 |
| Cow position: | chr11:26070094-26070316 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 246-486 |
| Cow position: | chr11:4026655-4026900 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 246-488 |
| Cow position: | chr11:23880985-23880734 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-522 |
| Cow position: | chr11:49558722-49559012 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 246-523 |
| Cow position: | chr11:81851759-81852038 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 246-533 |
| Cow position: | chr11:9733722-9734010 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-534 |
| Cow position: | chr11:74424551-74424245 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 263 |
| Conread position: | 246-537 |
| Cow position: | chr11:36763700-36763408 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 246-537 |
| Cow position: | chr11:58135352-58135051 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 254 |
| Conread position: | 246-540 |
| Cow position: | chr11:11989088-11988780 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 259 |
| Conread position: | 246-541 |
| Cow position: | chr11:12357458-12357762 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 220 |
| Conread position: | 246-541 |
| Cow position: | chr11:24394269-24393969 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-541 |
| Cow position: | chr11:26123974-26124273 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 246-541 |
| Cow position: | chr11:26548481-26548164 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 181 |
| Conread position: | 246-541 |
| Cow position: | chr11:29667650-29667954 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 253 |
| Conread position: | 246-541 |
| Cow position: | chr11:38834476-38834782 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 256 |
| Conread position: | 246-541 |
| Cow position: | chr11:41169738-41170042 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 254 |
| Conread position: | 246-541 |
| Cow position: | chr11:43513679-43513979 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 246-541 |
| Cow position: | chr11:44252754-44252449 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 255 |
| Conread position: | 246-541 |
| Cow position: | chr11:85392870-85393161 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 246-543 |
| Cow position: | chr11:30122887-30123194 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 246-543 |
| Cow position: | chr11:61400122-61400413 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 52, 128 |
| Conread position: | 246-544 |
| Cow position: | chr11:9156194-9156507 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 246-544 |
| Cow position: | chr11:72310078-72310384 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 201 |
| Conread position: | 246-545 |
| Cow position: | chr11:4056542-4056827 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 246-545 |
| Cow position: | chr11:19063117-19063423 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 252 |
| Conread position: | 246-545 |
| Cow position: | chr11:28228810-28229107 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr11:37358253-37357937 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 246-545 |
| Cow position: | chr11:44582383-44582686 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 246-545 |
| Cow position: | chr11:57627097-57627409 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 51, 258 |
| Conread position: | 246-545 |
| Cow position: | chr11:63654379-63654688 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 246-545 |
| Cow position: | chr11:67451449-67451143 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 96, 200 |
| Conread position: | 247-423 |
| Cow position: | chr11:87142533-87142353 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 247-541 |
| Cow position: | chr11:31861856-31861551 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 254 |
| Conread position: | 247-541 |
| Cow position: | chr11:44156295-44156594 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 96 |
| Conread position: | 248-466 |
| Cow position: | chr11:31873669-31873889 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 49, 121 |
| Conread position: | 248-545 |
| Cow position: | chr11:4034393-4034700 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 248-545 |
| Cow position: | chr11:40775046-40775362 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 95 |
| Conread position: | 249-393 |
| Cow position: | chr11:35254302-35254449 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 250-541 |
| Cow position: | chr11:28053663-28053958 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 207 |
| Conread position: | 250-544 |
| Cow position: | chr11:28065045-28064745 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 104 |
| Conread position: | 252-545 |
| Cow position: | chr11:54484464-54484763 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 253-541 |
| Cow position: | chr11:71330544-71330243 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 250 |
| Conread position: | 258-545 |
| Cow position: | chr11:1489210-1489497 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 260-541 |
| Cow position: | chr11:4269460-4269749 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 239 |
| Conread position: | 260-541 |
| Cow position: | chr11:10848392-10848104 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 238 |
| Conread position: | 260-541 |
| Cow position: | chr11:53431107-53431405 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 248 |
| Conread position: | 261-469 |
| Cow position: | chr11:20506169-20505955 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 92 |
| Conread position: | 261-469 |
| Cow position: | chr11:20511545-20511331 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 92 |
| Conread position: | 278-533 |
| Cow position: | chr11:23126980-23127236 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 289-540 |
| Cow position: | chr11:7110195-7110455 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 169 |
| Conread position: | 369-545 |
| Cow position: | chr11:12094392-12094215 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 99, 82 |
| Conread position: | 378-541 |
| Cow position: | chr11:22935910-22935747 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 35, 114 |
| Conread position: | 380-542 |
| Cow position: | chr11:9216266-9216429 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 386-535 |
| Cow position: | chr11:21444084-21443940 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 386-545 |
| Cow position: | chr11:1495277-1495439 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 108 |
Show alignments to all cow chromosomes.