Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-142 |
| Cow position: | chr13:6349952-6350098 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:41201572-41201392 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 1-195 |
| Cow position: | chr13:48203900-48204098 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 1-207 |
| Cow position: | chr13:17129710-17129926 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 12-202 |
| Cow position: | chr13:51091186-51091389 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 89 |
| Conread position: | 225-541 |
| Cow position: | chr13:43590373-43590053 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 17 |
| Conread position: | 229-485 |
| Cow position: | chr13:15450078-15450340 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 233-541 |
| Cow position: | chr13:11797681-11797989 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 247 |
| Conread position: | 233-541 |
| Cow position: | chr13:43982065-43982377 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 233-545 |
| Cow position: | chr13:34938484-34938182 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 244-545 |
| Cow position: | chr13:5624961-5625286 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 245-454 |
| Cow position: | chr13:30239342-30239132 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 107 |
| Conread position: | 246-452 |
| Cow position: | chr13:48358665-48358455 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-484 |
| Cow position: | chr13:23001985-23002234 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 246-530 |
| Cow position: | chr13:34041314-34041604 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 246-530 |
| Cow position: | chr13:37835301-37835589 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 246-541 |
| Cow position: | chr13:3653295-3653598 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 219 |
| Conread position: | 246-541 |
| Cow position: | chr13:4942407-4942106 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 251 |
| Conread position: | 246-541 |
| Cow position: | chr13:9045790-9045490 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 249 |
| Conread position: | 246-541 |
| Cow position: | chr13:14402073-14402376 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 252 |
| Conread position: | 246-541 |
| Cow position: | chr13:15923358-15923658 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 246-541 |
| Cow position: | chr13:30304318-30304005 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 246-541 |
| Cow position: | chr13:32546414-32546102 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 262 |
| Conread position: | 246-541 |
| Cow position: | chr13:35758306-35757994 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 68 |
| Conread position: | 246-545 |
| Cow position: | chr13:2387784-2388097 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 260 |
| Conread position: | 246-545 |
| Cow position: | chr13:13325952-13325638 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 260 |
| Conread position: | 246-545 |
| Cow position: | chr13:15519497-15519789 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 246-545 |
| Cow position: | chr13:16254361-16254666 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 246-545 |
| Cow position: | chr13:17309493-17309190 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 30, 186 |
| Conread position: | 246-545 |
| Cow position: | chr13:21697276-21696969 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 51, 253 |
| Conread position: | 246-545 |
| Cow position: | chr13:31732866-31733172 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 246-545 |
| Cow position: | chr13:32984319-32984633 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 261 |
| Conread position: | 246-545 |
| Cow position: | chr13:34324531-34324842 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 256 |
| Conread position: | 246-545 |
| Cow position: | chr13:60467351-60467044 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 253 |
| Conread position: | 247-541 |
| Cow position: | chr13:15543564-15543262 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 218 |
| Conread position: | 248-541 |
| Cow position: | chr13:6667110-6667412 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 252 |
| Conread position: | 249-545 |
| Cow position: | chr13:47228979-47229287 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 48, 254 |
| Conread position: | 253-541 |
| Cow position: | chr13:31611293-31611585 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 258-540 |
| Cow position: | chr13:17330751-17331041 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 260-541 |
| Cow position: | chr13:1592144-1592433 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 205 |
| Conread position: | 260-541 |
| Cow position: | chr13:4484799-4484515 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 82, 31 |
| Conread position: | 265-541 |
| Cow position: | chr13:32736820-32737102 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 267-541 |
| Cow position: | chr13:13900871-13900590 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 230 |
| Conread position: | 284-545 |
| Cow position: | chr13:34153772-34154043 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 217 |
| Conread position: | 310-541 |
| Cow position: | chr13:60699707-60699938 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 310-545 |
| Cow position: | chr13:30654420-30654663 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 188 |
| Conread position: | 329-533 |
| Cow position: | chr13:34765519-34765729 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 8, 86 |
| Conread position: | 335-545 |
| Cow position: | chr13:52645943-52646158 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 372-540 |
| Cow position: | chr13:28670372-28670540 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 378-545 |
| Cow position: | chr13:20541166-20541328 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 57 |
Show alignments to all cow chromosomes.