Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 2-163 |
| Cow position: | chr14:31380631-31380797 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 8-142 |
| Cow position: | chr14:46952912-46952777 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 8-202 |
| Cow position: | chr14:44481245-44481448 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 12-183 |
| Cow position: | chr14:12299678-12299504 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 12-202 |
| Cow position: | chr14:25988652-25988459 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 77 |
| Conread position: | 221-467 |
| Cow position: | chr14:46466609-46466365 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 225-536 |
| Cow position: | chr14:50139484-50139163 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 227-540 |
| Cow position: | chr14:44677028-44676712 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 233-541 |
| Cow position: | chr14:33402604-33402281 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 270 |
| Conread position: | 233-544 |
| Cow position: | chr14:40341969-40341644 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 244-404 |
| Cow position: | chr14:29775175-29775347 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 244-541 |
| Cow position: | chr14:7473251-7472953 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 244-541 |
| Cow position: | chr14:32447692-32447389 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 147 |
| Conread position: | 244-541 |
| Cow position: | chr14:50111695-50111385 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 148 |
| Conread position: | 244-545 |
| Cow position: | chr14:30595468-30595773 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 243 |
| Conread position: | 244-545 |
| Cow position: | chr14:38147905-38147600 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 244-545 |
| Cow position: | chr14:43559136-43558828 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 43 |
| Conread position: | 244-545 |
| Cow position: | chr14:44582268-44581944 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 244-545 |
| Cow position: | chr14:48601437-48601749 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 245-540 |
| Cow position: | chr14:21745000-21744702 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 52, 97 |
| Conread position: | 245-541 |
| Cow position: | chr14:11153252-11153562 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 259 |
| Conread position: | 245-544 |
| Cow position: | chr14:45710824-45711122 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 208 |
| Conread position: | 246-349 |
| Cow position: | chr14:15274951-15275056 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-397 |
| Cow position: | chr14:5513836-5513679 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-488 |
| Cow position: | chr14:44255858-44256100 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 50, 169 |
| Conread position: | 246-515 |
| Cow position: | chr14:13303857-13303593 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 246-537 |
| Cow position: | chr14:9514388-9514683 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 111 |
| Conread position: | 246-537 |
| Cow position: | chr14:19327363-19327667 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 258 |
| Conread position: | 246-540 |
| Cow position: | chr14:5074854-5074563 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 15, 132 |
| Conread position: | 246-541 |
| Cow position: | chr14:12742169-12742471 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 251 |
| Conread position: | 246-541 |
| Cow position: | chr14:13620242-13620555 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 266 |
| Conread position: | 246-541 |
| Cow position: | chr14:13779844-13779535 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 246-541 |
| Cow position: | chr14:17759981-17760284 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 188 |
| Conread position: | 246-541 |
| Cow position: | chr14:20783354-20783055 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 246-541 |
| Cow position: | chr14:22030546-22030850 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 253 |
| Conread position: | 246-541 |
| Cow position: | chr14:33677966-33677659 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 246-541 |
| Cow position: | chr14:37225090-37224787 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 252 |
| Conread position: | 246-541 |
| Cow position: | chr14:37412850-37413148 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 246-541 |
| Cow position: | chr14:44775140-44775441 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 106 |
| Conread position: | 246-545 |
| Cow position: | chr14:751464-751158 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 211 |
| Conread position: | 246-545 |
| Cow position: | chr14:2285227-2284930 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 53, 127 |
| Conread position: | 246-545 |
| Cow position: | chr14:17490560-17490867 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 234 |
| Conread position: | 246-545 |
| Cow position: | chr14:33392899-33393195 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 246-545 |
| Cow position: | chr14:38530559-38530867 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 190 |
| Conread position: | 247-541 |
| Cow position: | chr14:16918820-16919121 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 206 |
| Conread position: | 247-541 |
| Cow position: | chr14:17000161-17000463 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 247-541 |
| Cow position: | chr14:48253416-48253715 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 115 |
| Conread position: | 247-544 |
| Cow position: | chr14:48826184-48825876 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 146 |
| Conread position: | 247-545 |
| Cow position: | chr14:13863198-13863505 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 96 |
| Conread position: | 249-540 |
| Cow position: | chr14:40168836-40169121 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 250-544 |
| Cow position: | chr14:12611324-12611043 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 253-541 |
| Cow position: | chr14:5529954-5529667 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 103 |
| Conread position: | 253-541 |
| Cow position: | chr14:13274501-13274196 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 50, 255 |
| Conread position: | 260-545 |
| Cow position: | chr14:16272409-16272704 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 261-541 |
| Cow position: | chr14:45081938-45081646 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 197 |
| Conread position: | 308-545 |
| Cow position: | chr14:30666336-30666092 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 325-541 |
| Cow position: | chr14:190786-190563 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 330-541 |
| Cow position: | chr14:17686213-17685995 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 134 |
| Conread position: | 332-545 |
| Cow position: | chr14:23258168-23257945 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 6, 169 |
| Conread position: | 384-545 |
| Cow position: | chr14:44131640-44131476 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 389-541 |
| Cow position: | chr14:5512574-5512420 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 70 |
Show alignments to all cow chromosomes.