Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-173 |
| Cow position: | chr15:8439603-8439426 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 1-176 |
| Cow position: | chr15:50442097-50442278 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 1-202 |
| Cow position: | chr15:6447316-6447104 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 11-166 |
| Cow position: | chr15:49130263-49130108 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 145 |
| Conread position: | 12-161 |
| Cow position: | chr15:15632727-15632577 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 208-537 |
| Cow position: | chr15:814639-814972 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 8 |
| Conread position: | 218-537 |
| Cow position: | chr15:580359-580039 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 218-541 |
| Cow position: | chr15:18331896-18332231 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 250 |
| Conread position: | 223-545 |
| Cow position: | chr15:35736714-35736383 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 225-525 |
| Cow position: | chr15:58574-58262 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 226-545 |
| Cow position: | chr15:32719826-32720151 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 229-540 |
| Cow position: | chr15:32479680-32479993 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 229-541 |
| Cow position: | chr15:8751322-8751000 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 229-545 |
| Cow position: | chr15:9430858-9430522 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 86 |
| Conread position: | 232-487 |
| Cow position: | chr15:24718255-24717986 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 233-374 |
| Cow position: | chr15:24794738-24794592 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 233-484 |
| Cow position: | chr15:53299384-53299141 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 233-533 |
| Cow position: | chr15:7261520-7261217 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 111 |
| Conread position: | 233-537 |
| Cow position: | chr15:36625347-36625669 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 271 |
| Conread position: | 233-537 |
| Cow position: | chr15:51611260-51610953 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 125 |
| Conread position: | 233-540 |
| Cow position: | chr15:1765221-1764919 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 234-510 |
| Cow position: | chr15:17149036-17148750 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 15, 159 |
| Conread position: | 235-537 |
| Cow position: | chr15:4950978-4950666 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 244-523 |
| Cow position: | chr15:8409776-8409492 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 53, 219 |
| Conread position: | 244-530 |
| Cow position: | chr15:35646776-35647063 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 49 |
| Conread position: | 244-541 |
| Cow position: | chr15:4679161-4678873 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 58, 190 |
| Conread position: | 244-545 |
| Cow position: | chr15:5981252-5980942 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 255 |
| Conread position: | 246-375 |
| Cow position: | chr15:611400-611533 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-452 |
| Cow position: | chr15:32492974-32493189 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 246-463 |
| Cow position: | chr15:314935-315156 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-513 |
| Cow position: | chr15:1299658-1299935 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 254 |
| Conread position: | 246-535 |
| Cow position: | chr15:8811123-8811421 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 254 |
| Conread position: | 246-536 |
| Cow position: | chr15:4672338-4672037 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 50, 254 |
| Conread position: | 246-537 |
| Cow position: | chr15:2213995-2214292 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 172 |
| Conread position: | 246-537 |
| Cow position: | chr15:6624108-6623813 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 246-537 |
| Cow position: | chr15:17293948-17293664 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 56, 68 |
| Conread position: | 246-537 |
| Cow position: | chr15:21450581-21450271 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 246-540 |
| Cow position: | chr15:1238568-1238277 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 246-540 |
| Cow position: | chr15:4652274-4651951 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 276 |
| Conread position: | 246-540 |
| Cow position: | chr15:7838162-7837849 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 58, 122 |
| Conread position: | 246-541 |
| Cow position: | chr15:2077556-2077256 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 246-541 |
| Cow position: | chr15:2926207-2925910 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 246-541 |
| Cow position: | chr15:3260421-3260720 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 246-541 |
| Cow position: | chr15:4386654-4386358 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 246-541 |
| Cow position: | chr15:4916088-4915794 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 82 |
| Conread position: | 246-541 |
| Cow position: | chr15:6155044-6155345 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 246-541 |
| Cow position: | chr15:6386443-6386745 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 52, 252 |
| Conread position: | 246-541 |
| Cow position: | chr15:14581463-14581762 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 246-541 |
| Cow position: | chr15:15346212-15346516 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 107 |
| Conread position: | 246-541 |
| Cow position: | chr15:18577613-18577309 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 254 |
| Conread position: | 246-541 |
| Cow position: | chr15:19737160-19737451 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 47 |
| Conread position: | 246-541 |
| Cow position: | chr15:21664842-21665148 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 246-541 |
| Cow position: | chr15:38981622-38981323 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 246-543 |
| Cow position: | chr15:7235148-7234853 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 56, 95 |
| Conread position: | 246-543 |
| Cow position: | chr15:36392253-36392543 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 246-545 |
| Cow position: | chr15:523969-524265 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 246-545 |
| Cow position: | chr15:2646754-2647061 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 253 |
| Conread position: | 246-545 |
| Cow position: | chr15:4141917-4142224 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 205 |
| Conread position: | 246-545 |
| Cow position: | chr15:4197363-4197056 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr15:6079646-6079347 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 246-545 |
| Cow position: | chr15:8100369-8100064 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 199 |
| Conread position: | 246-545 |
| Cow position: | chr15:16595731-16595424 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 217 |
| Conread position: | 246-545 |
| Cow position: | chr15:20750292-20749984 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 213 |
| Conread position: | 246-545 |
| Cow position: | chr15:22378805-22378498 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 247-541 |
| Cow position: | chr15:51218498-51218202 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 247-543 |
| Cow position: | chr15:6591717-6592022 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 248-471 |
| Cow position: | chr15:13677421-13677206 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 249-537 |
| Cow position: | chr15:40107925-40107644 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 74 |
| Conread position: | 250-533 |
| Cow position: | chr15:1783134-1782841 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 250-545 |
| Cow position: | chr15:4962535-4962228 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 253-540 |
| Cow position: | chr15:7965066-7965348 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 79 |
| Conread position: | 253-541 |
| Cow position: | chr15:51675610-51675316 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 45, 244 |
| Conread position: | 253-544 |
| Cow position: | chr15:31359765-31359472 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 260-541 |
| Cow position: | chr15:4923031-4922747 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 171 |
| Conread position: | 260-541 |
| Cow position: | chr15:24295972-24295696 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 115 |
| Conread position: | 262-516 |
| Cow position: | chr15:6479028-6478770 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 162 |
| Conread position: | 262-522 |
| Cow position: | chr15:31783916-31784173 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 262-541 |
| Cow position: | chr15:35752434-35752720 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 130 |
| Conread position: | 267-541 |
| Cow position: | chr15:12420546-12420829 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 233 |
| Conread position: | 291-540 |
| Cow position: | chr15:36668603-36668346 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 297-545 |
| Cow position: | chr15:17684498-17684750 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 194 |
| Conread position: | 306-540 |
| Cow position: | chr15:3840786-3841037 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 202 |
| Conread position: | 325-541 |
| Cow position: | chr15:44070749-44070526 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 174 |
| Conread position: | 329-545 |
| Cow position: | chr15:2901651-2901882 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 355-540 |
| Cow position: | chr15:9913488-9913292 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 147 |
Show alignments to all cow chromosomes.