Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-105 |
| Cow position: | chr16:40511362-40511471 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-163 |
| Cow position: | chr16:13513432-13513265 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 1-176 |
| Cow position: | chr16:33377389-33377570 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 1-202 |
| Cow position: | chr16:44460508-44460300 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-202 |
| Cow position: | chr16:48895863-48895652 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 202 |
| Conread position: | 12-173 |
| Cow position: | chr16:571368-571527 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 90 |
| Conread position: | 12-202 |
| Cow position: | chr16:412257-412061 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 179-541 |
| Cow position: | chr16:1432817-1432440 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 211-392 |
| Cow position: | chr16:20331373-20331188 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 218-541 |
| Cow position: | chr16:23801521-23801861 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 229-441 |
| Cow position: | chr16:29984654-29984445 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 136 |
| Conread position: | 229-485 |
| Cow position: | chr16:17056395-17056663 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 229 |
| Conread position: | 232-540 |
| Cow position: | chr16:41754888-41755202 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 65, 260 |
| Conread position: | 233-480 |
| Cow position: | chr16:23808899-23808655 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 16, 131 |
| Conread position: | 233-495 |
| Cow position: | chr16:16898028-16897761 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 233-540 |
| Cow position: | chr16:49234061-49234375 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 233-541 |
| Cow position: | chr16:23671268-23670952 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 214 |
| Conread position: | 233-541 |
| Cow position: | chr16:42735821-42736146 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 276 |
| Conread position: | 233-545 |
| Cow position: | chr16:27594078-27593757 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 267 |
| Conread position: | 234-541 |
| Cow position: | chr16:26105487-26105808 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 230 |
| Conread position: | 244-540 |
| Cow position: | chr16:10565220-10565502 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 244-540 |
| Cow position: | chr16:25171906-25171605 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 211 |
| Conread position: | 244-540 |
| Cow position: | chr16:26978687-26978394 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 244-541 |
| Cow position: | chr16:8815545-8815851 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 255 |
| Conread position: | 244-542 |
| Cow position: | chr16:16270575-16270886 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 259 |
| Conread position: | 246-390 |
| Cow position: | chr16:54324778-54324928 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 246-400 |
| Cow position: | chr16:27732822-27732983 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 246-417 |
| Cow position: | chr16:2726672-2726850 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-472 |
| Cow position: | chr16:49221326-49221553 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 246-477 |
| Cow position: | chr16:55049316-55049548 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 246-480 |
| Cow position: | chr16:49255672-49255907 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 246-525 |
| Cow position: | chr16:3330495-3330207 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 246-537 |
| Cow position: | chr16:15477400-15477100 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 246-537 |
| Cow position: | chr16:15494061-15493762 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 219 |
| Conread position: | 246-540 |
| Cow position: | chr16:23983853-23983553 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 250 |
| Conread position: | 246-540 |
| Cow position: | chr16:25442184-25441884 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 246-540 |
| Cow position: | chr16:40295616-40295921 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 254 |
| Conread position: | 246-541 |
| Cow position: | chr16:406483-406784 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 217 |
| Conread position: | 246-541 |
| Cow position: | chr16:837873-837568 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 246-541 |
| Cow position: | chr16:1566898-1567198 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 246-541 |
| Cow position: | chr16:2410411-2410711 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 246-541 |
| Cow position: | chr16:2482582-2482884 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 97 |
| Conread position: | 246-541 |
| Cow position: | chr16:7675901-7676202 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 246-541 |
| Cow position: | chr16:15185631-15185327 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 254 |
| Conread position: | 246-541 |
| Cow position: | chr16:15567815-15567509 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 254 |
| Conread position: | 246-541 |
| Cow position: | chr16:18497744-18498033 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 246-541 |
| Cow position: | chr16:23535333-23535636 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 212 |
| Conread position: | 246-541 |
| Cow position: | chr16:25086174-25085871 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 256 |
| Conread position: | 246-541 |
| Cow position: | chr16:25342515-25342224 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 129 |
| Conread position: | 246-541 |
| Cow position: | chr16:25456921-25457207 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 246-541 |
| Cow position: | chr16:26664309-26664005 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 246-545 |
| Cow position: | chr16:1860770-1860473 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 246-545 |
| Cow position: | chr16:3088648-3088951 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 246-545 |
| Cow position: | chr16:5662392-5662093 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 169 |
| Conread position: | 246-545 |
| Cow position: | chr16:21186172-21185865 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr16:25189205-25188899 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 211 |
| Conread position: | 246-545 |
| Cow position: | chr16:56916514-56916814 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 247-541 |
| Cow position: | chr16:5485287-5484986 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 250 |
| Conread position: | 247-541 |
| Cow position: | chr16:23251881-23252180 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 209 |
| Conread position: | 248-539 |
| Cow position: | chr16:11110491-11110783 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 57, 170 |
| Conread position: | 249-545 |
| Cow position: | chr16:10375045-10375349 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 49, 251 |
| Conread position: | 253-544 |
| Cow position: | chr16:337716-337419 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 160 |
| Conread position: | 260-537 |
| Cow position: | chr16:4478427-4478724 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 251 |
| Conread position: | 260-537 |
| Cow position: | chr16:6716048-6716330 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 131 |
| Conread position: | 260-541 |
| Cow position: | chr16:10438795-10438507 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 173 |
| Conread position: | 260-541 |
| Cow position: | chr16:14665266-14665555 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 191 |
| Conread position: | 260-541 |
| Cow position: | chr16:31591373-31591664 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 189 |
| Conread position: | 260-541 |
| Cow position: | chr16:43896731-43897021 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 239 |
| Conread position: | 273-536 |
| Cow position: | chr16:19151086-19151362 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 273-541 |
| Cow position: | chr16:7464359-7464082 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 193 |
| Conread position: | 282-541 |
| Cow position: | chr16:28470583-28470846 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 332-545 |
| Cow position: | chr16:9931308-9931099 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 355-541 |
| Cow position: | chr16:12537482-12537672 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 427-541 |
| Cow position: | chr16:2726919-2727033 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 64 |
| Conread position: | 427-541 |
| Cow position: | chr16:27733429-27733543 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 64 |
Show alignments to all cow chromosomes.