Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-149 |
| Cow position: | chr17:42793980-42793829 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-176 |
| Cow position: | chr17:23463695-23463528 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 16, 107 |
| Conread position: | 12-177 |
| Cow position: | chr17:21342752-21342915 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 222-393 |
| Cow position: | chr17:12669274-12669443 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 222-535 |
| Cow position: | chr17:1656698-1657017 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 225-542 |
| Cow position: | chr17:20403577-20403244 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 228-541 |
| Cow position: | chr17:6069700-6069381 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 229-541 |
| Cow position: | chr17:15324979-15324656 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 273 |
| Conread position: | 230-540 |
| Cow position: | chr17:8203099-8202793 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 67, 150 |
| Conread position: | 230-541 |
| Cow position: | chr17:239477-239174 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 233-545 |
| Cow position: | chr17:16121414-16121719 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 244-536 |
| Cow position: | chr17:21418703-21418412 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 244-540 |
| Cow position: | chr17:18194937-18194639 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 171 |
| Conread position: | 244-541 |
| Cow position: | chr17:16856388-16856691 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 256 |
| Conread position: | 244-545 |
| Cow position: | chr17:4061228-4060919 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 255 |
| Conread position: | 245-537 |
| Cow position: | chr17:37021-36723 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 246-439 |
| Cow position: | chr17:42266545-42266346 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 246-536 |
| Cow position: | chr17:22559098-22558804 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 176 |
| Conread position: | 246-537 |
| Cow position: | chr17:150756-151067 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 266 |
| Conread position: | 246-537 |
| Cow position: | chr17:15851817-15851520 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 219 |
| Conread position: | 246-540 |
| Cow position: | chr17:4083151-4082852 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 51, 164 |
| Conread position: | 246-541 |
| Cow position: | chr17:2580752-2580445 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 246-541 |
| Cow position: | chr17:11086598-11086895 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 246-541 |
| Cow position: | chr17:14240628-14240325 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 252 |
| Conread position: | 246-541 |
| Cow position: | chr17:20080742-20081043 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 246-541 |
| Cow position: | chr17:24028869-24029177 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 224 |
| Conread position: | 246-543 |
| Cow position: | chr17:20086638-20086927 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 246-543 |
| Cow position: | chr17:20099339-20099652 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 260 |
| Conread position: | 246-545 |
| Cow position: | chr17:1786826-1787114 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 127, 36 |
| Conread position: | 246-545 |
| Cow position: | chr17:2174931-2174634 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 79 |
| Conread position: | 246-545 |
| Cow position: | chr17:2263236-2262928 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 177 |
| Conread position: | 246-545 |
| Cow position: | chr17:6120844-6120535 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 255 |
| Conread position: | 246-545 |
| Cow position: | chr17:6611359-6611666 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr17:15436910-15436615 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 246-545 |
| Cow position: | chr17:22133327-22133024 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 246-545 |
| Cow position: | chr17:23323324-23323630 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 246-545 |
| Cow position: | chr17:31766909-31767218 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 30, 255 |
| Conread position: | 247-473 |
| Cow position: | chr17:13695017-13695234 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 87 |
| Conread position: | 247-473 |
| Cow position: | chr17:14895300-14895071 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 208 |
| Conread position: | 248-401 |
| Cow position: | chr17:13675164-13675322 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 249-414 |
| Cow position: | chr17:33284708-33284880 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 251-545 |
| Cow position: | chr17:34157245-34156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 209 |
| Conread position: | 260-541 |
| Cow position: | chr17:1881216-1880924 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 242 |
| Conread position: | 260-541 |
| Cow position: | chr17:40805922-40805636 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 261-541 |
| Cow position: | chr17:6260974-6260684 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 240 |
| Conread position: | 261-541 |
| Cow position: | chr17:19267713-19268002 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 239 |
| Conread position: | 262-545 |
| Cow position: | chr17:5227737-5227441 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 289-517 |
| Cow position: | chr17:20489027-20488793 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 386-541 |
| Cow position: | chr17:3641850-3642008 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 414-541 |
| Cow position: | chr17:42265915-42265788 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 78 |
Show alignments to all cow chromosomes.