Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-202 |
| Cow position: | chr2:46205021-46204817 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 1-202 |
| Cow position: | chr2:81185837-81186047 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 8-174 |
| Cow position: | chr2:66671030-66671198 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 211-540 |
| Cow position: | chr2:45918734-45919074 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 31, 139 |
| Conread position: | 211-541 |
| Cow position: | chr2:13481854-13482172 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 92, 31 |
| Conread position: | 218-541 |
| Cow position: | chr2:50078402-50078081 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 38, 160 |
| Conread position: | 221-545 |
| Cow position: | chr2:44934169-44934494 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 152 |
| Conread position: | 225-543 |
| Cow position: | chr2:9189237-9189537 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 225-545 |
| Cow position: | chr2:32656449-32656134 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 76, 17 |
| Conread position: | 228-371 |
| Cow position: | chr2:19225680-19225537 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 229-537 |
| Cow position: | chr2:3834162-3834476 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 123 |
| Conread position: | 233-488 |
| Cow position: | chr2:37789114-37789374 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 102, 9 |
| Conread position: | 233-540 |
| Cow position: | chr2:3789062-3789361 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 233-541 |
| Cow position: | chr2:34563863-34564161 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 16, 195 |
| Conread position: | 233-545 |
| Cow position: | chr2:78763435-78763129 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 244-540 |
| Cow position: | chr2:35356802-35356502 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 104 |
| Conread position: | 245-537 |
| Cow position: | chr2:247093-247386 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 245 |
| Conread position: | 246-411 |
| Cow position: | chr2:80291969-80292140 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 246-464 |
| Cow position: | chr2:50982572-50982789 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 246-481 |
| Cow position: | chr2:65937448-65937694 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 218 |
| Conread position: | 246-513 |
| Cow position: | chr2:34473797-34474061 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 246-523 |
| Cow position: | chr2:15576055-15576348 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 260 |
| Conread position: | 246-535 |
| Cow position: | chr2:14823870-14823571 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 254 |
| Conread position: | 246-536 |
| Cow position: | chr2:40453685-40453398 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 246-537 |
| Cow position: | chr2:6962301-6962002 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 51, 170 |
| Conread position: | 246-537 |
| Cow position: | chr2:12479286-12479589 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 246-537 |
| Cow position: | chr2:22078572-22078269 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 115 |
| Conread position: | 246-537 |
| Cow position: | chr2:24925349-24925048 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 251 |
| Conread position: | 246-537 |
| Cow position: | chr2:43961479-43961179 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 246-540 |
| Cow position: | chr2:11158339-11158636 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 246-541 |
| Cow position: | chr2:281907-282208 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 251 |
| Conread position: | 246-541 |
| Cow position: | chr2:8119328-8119023 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 255 |
| Conread position: | 246-541 |
| Cow position: | chr2:13044929-13045232 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 219 |
| Conread position: | 246-541 |
| Cow position: | chr2:16901044-16900734 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 246-541 |
| Cow position: | chr2:24147646-24147345 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 251 |
| Conread position: | 246-541 |
| Cow position: | chr2:28648818-28649117 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 246-541 |
| Cow position: | chr2:34051941-34051649 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 228 |
| Conread position: | 246-541 |
| Cow position: | chr2:36052229-36052527 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 90, 56 |
| Conread position: | 246-541 |
| Cow position: | chr2:36981163-36980862 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 88 |
| Conread position: | 246-541 |
| Cow position: | chr2:42669921-42670224 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 194 |
| Conread position: | 246-541 |
| Cow position: | chr2:47602481-47602786 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 254 |
| Conread position: | 246-541 |
| Cow position: | chr2:47811633-47811324 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 258 |
| Conread position: | 246-541 |
| Cow position: | chr2:53330549-53330243 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 222 |
| Conread position: | 246-541 |
| Cow position: | chr2:81257952-81257653 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 246-543 |
| Cow position: | chr2:16074748-16075030 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 246-545 |
| Cow position: | chr2:3323776-3324084 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 255 |
| Conread position: | 246-545 |
| Cow position: | chr2:5869598-5869909 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 255 |
| Conread position: | 246-545 |
| Cow position: | chr2:5903537-5903841 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 246-545 |
| Cow position: | chr2:9908699-9908391 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 213 |
| Conread position: | 246-545 |
| Cow position: | chr2:25028508-25028805 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 201 |
| Conread position: | 246-545 |
| Cow position: | chr2:31298575-31298261 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 211 |
| Conread position: | 246-545 |
| Cow position: | chr2:49605724-49605420 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 246-545 |
| Cow position: | chr2:52617259-52616949 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 256 |
| Conread position: | 246-545 |
| Cow position: | chr2:53540722-53540423 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-545 |
| Cow position: | chr2:54738272-54737959 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 246-545 |
| Cow position: | chr2:55483367-55483667 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 117 |
| Conread position: | 246-545 |
| Cow position: | chr2:59412909-59413207 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-545 |
| Cow position: | chr2:78743365-78743069 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 247-545 |
| Cow position: | chr2:574376-574070 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 248-541 |
| Cow position: | chr2:28794029-28793732 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 95 |
| Conread position: | 248-542 |
| Cow position: | chr2:36029592-36029889 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 248-545 |
| Cow position: | chr2:1691751-1691453 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 249-537 |
| Cow position: | chr2:63291190-63291483 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 249-545 |
| Cow position: | chr2:10610865-10611163 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 250-431 |
| Cow position: | chr2:32434537-32434726 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 250-532 |
| Cow position: | chr2:42332111-42332395 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 250-540 |
| Cow position: | chr2:44990514-44990821 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 257 |
| Conread position: | 250-545 |
| Cow position: | chr2:51618031-51617726 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 253-530 |
| Cow position: | chr2:16283115-16282839 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 260-533 |
| Cow position: | chr2:25887777-25888052 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 180 |
| Conread position: | 260-540 |
| Cow position: | chr2:10185458-10185743 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 174 |
| Conread position: | 260-541 |
| Cow position: | chr2:19012124-19011827 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 245 |
| Conread position: | 260-545 |
| Cow position: | chr2:2355670-2355963 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 37, 198 |
| Conread position: | 266-536 |
| Cow position: | chr2:5484245-5484513 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 109 |
| Conread position: | 280-541 |
| Cow position: | chr2:32065330-32065599 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 292-545 |
| Cow position: | chr2:16291188-16290929 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 299-541 |
| Cow position: | chr2:10267934-10268176 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 329-545 |
| Cow position: | chr2:53554648-53554435 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 378-545 |
| Cow position: | chr2:41173314-41173145 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 115 |
| Conread position: | 407-545 |
| Cow position: | chr2:45964500-45964639 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 85 |
Show alignments to all cow chromosomes.