Cow genome map

Conread name: rgul0117_e19.y1

Conread position: 1-151
Cow position: chr28:32649222-32649064 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 8-166
Cow position: chr28:4547596-4547442 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 93

Conread position: 12-176
Cow position: chr28:2370624-2370791 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 88

Conread position: 161-540
Cow position: chr28:21360861-21360474 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 37

Conread position: 219-454
Cow position: chr28:21566778-21566530 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 26, 48

Conread position: 223-541
Cow position: chr28:8380381-8380050 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 281

Conread position: 244-537
Cow position: chr28:29821289-29820988 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 220

Conread position: 244-541
Cow position: chr28:3190962-3191267 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 149

Conread position: 244-541
Cow position: chr28:26424961-26425267 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 222

Conread position: 244-545
Cow position: chr28:24668902-24668596 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 40

Conread position: 245-540
Cow position: chr28:14194247-14194537 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 52, 38

Conread position: 245-544
Cow position: chr28:10072565-10072260 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 213

Conread position: 246-353
Cow position: chr28:698536-698428 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 106

Conread position: 246-471
Cow position: chr28:6778650-6778882 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 213

Conread position: 246-471
Cow position: chr28:33253597-33253383 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 56, 97

Conread position: 246-475
Cow position: chr28:2085750-2085513 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 51, 0

Conread position: 246-479
Cow position: chr28:22231987-22232225 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 51, 217

Conread position: 246-537
Cow position: chr28:5567428-5567147 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 51, 97

Conread position: 246-537
Cow position: chr28:5938775-5938477 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 97

Conread position: 246-537
Cow position: chr28:10496241-10496541 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 169

Conread position: 246-537
Cow position: chr28:12408946-12409242 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 58

Conread position: 246-537
Cow position: chr28:18519160-18519457 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 97

Conread position: 246-540
Cow position: chr28:1506158-1505856 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 253

Conread position: 246-541
Cow position: chr28:783948-783661 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 201

Conread position: 246-541
Cow position: chr28:1166593-1166890 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 35

Conread position: 246-541
Cow position: chr28:7003287-7002984 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 77

Conread position: 246-541
Cow position: chr28:7741733-7741436 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 162

Conread position: 246-541
Cow position: chr28:10470796-10470496 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 251

Conread position: 246-541
Cow position: chr28:12151598-12151293 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 255

Conread position: 246-541
Cow position: chr28:13461267-13460962 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 122

Conread position: 246-541
Cow position: chr28:14704096-14704399 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 253

Conread position: 246-541
Cow position: chr28:15034832-15035128 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 246-541
Cow position: chr28:22259860-22260163 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 219

Conread position: 246-541
Cow position: chr28:32791090-32791387 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 97

Conread position: 246-544
Cow position: chr28:6537973-6538279 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 41

Conread position: 246-545
Cow position: chr28:14751835-14751528 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 51, 212

Conread position: 246-545
Cow position: chr28:24883694-24883991 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 51, 128

Conread position: 247-541
Cow position: chr28:17666016-17666318 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 218

Conread position: 248-541
Cow position: chr28:1386112-1386410 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 21

Conread position: 248-545
Cow position: chr28:8719671-8719962 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 72

Conread position: 249-541
Cow position: chr28:5799581-5799286 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 111

Conread position: 249-545
Cow position: chr28:1954642-1954338 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 209

Conread position: 250-537
Cow position: chr28:13373968-13374245 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 55, 152

Conread position: 250-541
Cow position: chr28:18146451-18146741 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 116, 156

Conread position: 250-544
Cow position: chr28:5766016-5765738 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 49, 16

Conread position: 251-545
Cow position: chr28:22041999-22042291 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 17, 125

Conread position: 254-537
Cow position: chr28:7811718-7811442 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 27, 12

Conread position: 260-541
Cow position: chr28:5750430-5750719 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 239

Conread position: 272-544
Cow position: chr28:5814622-5814362 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 85

Conread position: 275-541
Cow position: chr28:1813603-1813875 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 68

Conread position: 283-540
Cow position: chr28:29760675-29760941 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 25, 215

Conread position: 296-541
Cow position: chr28:10580848-10581102 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 195
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 17, 170

Conread position: 296-545
Cow position: chr28:2987847-2988099 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 40, 51

Conread position: 300-536
Cow position: chr28:15684467-15684232 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 117, 33

Conread position: 320-540
Cow position: chr28:27678759-27678539 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 39

Conread position: 329-541
Cow position: chr28:5113090-5113308 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 7, 63

Conread position: 330-541
Cow position: chr28:1216947-1217168 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 45, 12

Show alignments to all cow chromosomes.