Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 11-133 |
| Cow position: | chr29:31236422-31236298 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 12-159 |
| Cow position: | chr29:6389851-6389703 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 126 |
| Conread position: | 225-488 |
| Cow position: | chr29:32892066-32891791 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 229-541 |
| Cow position: | chr29:34798535-34798856 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 271 |
| Conread position: | 229-541 |
| Cow position: | chr29:38228251-38227931 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 269 |
| Conread position: | 233-536 |
| Cow position: | chr29:3176152-3176454 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 233-545 |
| Cow position: | chr29:609375-609676 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 244-540 |
| Cow position: | chr29:32804674-32804392 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 92, 41 |
| Conread position: | 245-533 |
| Cow position: | chr29:2101091-2100811 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 130, 54 |
| Conread position: | 245-542 |
| Cow position: | chr29:647051-646749 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 246-514 |
| Cow position: | chr29:42938940-42939219 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 254 |
| Conread position: | 246-536 |
| Cow position: | chr29:10646993-10647291 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 219 |
| Conread position: | 246-537 |
| Cow position: | chr29:47182-47480 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 251 |
| Conread position: | 246-537 |
| Cow position: | chr29:10822727-10823026 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 246-540 |
| Cow position: | chr29:16023815-16023524 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 38 |
| Conread position: | 246-540 |
| Cow position: | chr29:45460998-45460677 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 51, 273 |
| Conread position: | 246-541 |
| Cow position: | chr29:2747187-2747478 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 246-541 |
| Cow position: | chr29:5958845-5958553 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 246-541 |
| Cow position: | chr29:8664764-8664464 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 51, 183 |
| Conread position: | 246-541 |
| Cow position: | chr29:15997398-15997713 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 53, 183 |
| Conread position: | 246-541 |
| Cow position: | chr29:19654883-19654582 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 250 |
| Conread position: | 246-541 |
| Cow position: | chr29:20252423-20252118 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 254 |
| Conread position: | 246-541 |
| Cow position: | chr29:23977380-23977074 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 43 |
| Conread position: | 246-541 |
| Cow position: | chr29:26163580-26163876 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-541 |
| Cow position: | chr29:32541351-32541047 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 255 |
| Conread position: | 246-542 |
| Cow position: | chr29:13583335-13583032 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 239 |
| Conread position: | 246-545 |
| Cow position: | chr29:668814-669109 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 246-545 |
| Cow position: | chr29:6213777-6213474 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 76 |
| Conread position: | 246-545 |
| Cow position: | chr29:18855694-18856001 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr29:27979669-27979975 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 211 |
| Conread position: | 246-545 |
| Cow position: | chr29:45205755-45205452 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 218 |
| Conread position: | 247-541 |
| Cow position: | chr29:14210316-14210615 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 57 |
| Conread position: | 247-541 |
| Cow position: | chr29:39078452-39078752 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 96 |
| Conread position: | 247-541 |
| Cow position: | chr29:42803666-42803364 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 150 |
| Conread position: | 248-541 |
| Cow position: | chr29:25931276-25931587 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 39 |
| Conread position: | 248-545 |
| Cow position: | chr29:5981456-5981765 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 249-545 |
| Cow position: | chr29:14084876-14085179 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 248 |
| Conread position: | 250-541 |
| Cow position: | chr29:27262645-27262943 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 252-466 |
| Cow position: | chr29:14112793-14112575 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 253-537 |
| Cow position: | chr29:32287429-32287152 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 44, 162 |
| Conread position: | 253-541 |
| Cow position: | chr29:45586131-45586422 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 211 |
| Conread position: | 260-541 |
| Cow position: | chr29:7429976-7430265 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 239 |
| Conread position: | 260-541 |
| Cow position: | chr29:19622040-19622330 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 239 |
| Conread position: | 262-541 |
| Cow position: | chr29:14587158-14586874 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 81 |
| Conread position: | 274-545 |
| Cow position: | chr29:43323786-43323507 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 225 |
| Conread position: | 309-541 |
| Cow position: | chr29:6265074-6265321 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 315-541 |
| Cow position: | chr29:40501797-40502027 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 118 |
| Conread position: | 378-545 |
| Cow position: | chr29:21425907-21426079 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 60 |
Show alignments to all cow chromosomes.