Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 2-158 |
| Cow position: | chr4:63398672-63398512 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 2-166 |
| Cow position: | chr4:63394075-63393907 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 11-202 |
| Cow position: | chr4:42981055-42981252 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 108 |
| Conread position: | 226-545 |
| Cow position: | chr4:11836680-11836991 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 49 |
| Conread position: | 229-487 |
| Cow position: | chr4:20182033-20181766 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 229-540 |
| Cow position: | chr4:51042300-51042614 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 155 |
| Conread position: | 229-541 |
| Cow position: | chr4:12240221-12240548 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 277 |
| Conread position: | 232-517 |
| Cow position: | chr4:34178245-34178540 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 268 |
| Conread position: | 233-541 |
| Cow position: | chr4:28832546-28832230 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 244-541 |
| Cow position: | chr4:46665504-46665191 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 53, 254 |
| Conread position: | 245-537 |
| Cow position: | chr4:967100-967401 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 52, 212 |
| Conread position: | 246-361 |
| Cow position: | chr4:41191627-41191744 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-400 |
| Cow position: | chr4:48027793-48027634 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 246-454 |
| Cow position: | chr4:68110055-68110272 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-524 |
| Cow position: | chr4:69521512-69521248 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 246-535 |
| Cow position: | chr4:31564328-31564628 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 184 |
| Conread position: | 246-537 |
| Cow position: | chr4:17924991-17925285 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 246-537 |
| Cow position: | chr4:28149393-28149114 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 166, 50 |
| Conread position: | 246-537 |
| Cow position: | chr4:41333661-41333380 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 246-537 |
| Cow position: | chr4:49716647-49716355 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 246-541 |
| Cow position: | chr4:356884-356584 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 246-541 |
| Cow position: | chr4:1049284-1049589 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 246-541 |
| Cow position: | chr4:10882525-10882222 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 246-541 |
| Cow position: | chr4:13494306-13493994 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 262 |
| Conread position: | 246-541 |
| Cow position: | chr4:16360891-16360587 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 200 |
| Conread position: | 246-541 |
| Cow position: | chr4:16639588-16639286 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 218 |
| Conread position: | 246-541 |
| Cow position: | chr4:33071850-33072145 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 246-541 |
| Cow position: | chr4:36897350-36897048 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 246-541 |
| Cow position: | chr4:43318664-43318967 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 219 |
| Conread position: | 246-541 |
| Cow position: | chr4:43882080-43881781 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 97 |
| Conread position: | 246-541 |
| Cow position: | chr4:44726563-44726269 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 246-541 |
| Cow position: | chr4:57984962-57984654 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 246-542 |
| Cow position: | chr4:4417035-4416745 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 51, 195 |
| Conread position: | 246-542 |
| Cow position: | chr4:27300508-27300801 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 246-544 |
| Cow position: | chr4:27334686-27334385 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 246-545 |
| Cow position: | chr4:160138-159829 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 256 |
| Conread position: | 246-545 |
| Cow position: | chr4:1929665-1929972 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 254 |
| Conread position: | 246-545 |
| Cow position: | chr4:5443856-5444165 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 255 |
| Conread position: | 246-545 |
| Cow position: | chr4:5881132-5880824 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 254 |
| Conread position: | 246-545 |
| Cow position: | chr4:9847238-9847554 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 246-545 |
| Cow position: | chr4:12588307-12588004 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 251 |
| Conread position: | 246-545 |
| Cow position: | chr4:18423547-18423853 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr4:44780249-44780554 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 188 |
| Conread position: | 246-545 |
| Cow position: | chr4:45106436-45106129 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr4:67682170-67681863 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 253 |
| Conread position: | 247-513 |
| Cow position: | chr4:26876805-26877079 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 211 |
| Conread position: | 247-541 |
| Cow position: | chr4:60263185-60263490 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 255 |
| Conread position: | 249-544 |
| Cow position: | chr4:17092892-17093194 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 209 |
| Conread position: | 249-545 |
| Cow position: | chr4:32213137-32212841 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 250-535 |
| Cow position: | chr4:11110308-11110583 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 251-541 |
| Cow position: | chr4:33596492-33596212 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 253-545 |
| Cow position: | chr4:6489394-6489692 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 194 |
| Conread position: | 258-545 |
| Cow position: | chr4:45298137-45298414 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 315-541 |
| Cow position: | chr4:33494495-33494265 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 112 |
| Conread position: | 387-541 |
| Cow position: | chr4:18517729-18517574 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 85, 64 |
Show alignments to all cow chromosomes.