Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-166 |
| Cow position: | chr5:75573257-75573426 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 144 |
| Conread position: | 1-173 |
| Cow position: | chr5:47619456-47619629 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 1-198 |
| Cow position: | chr5:18710021-18709823 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 122 |
| Conread position: | 1-202 |
| Cow position: | chr5:19914650-19914436 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-202 |
| Cow position: | chr5:64103871-64104080 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 162 |
| Conread position: | 1-202 |
| Cow position: | chr5:66106767-66106559 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 15, 122 |
| Conread position: | 12-109 |
| Cow position: | chr5:37372177-37372078 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 12-162 |
| Cow position: | chr5:42183292-42183442 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 12-173 |
| Cow position: | chr5:64796282-64796123 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 12-202 |
| Cow position: | chr5:29536975-29537171 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 88 |
| Conread position: | 167-545 |
| Cow position: | chr5:58197169-58196782 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 81 |
| Conread position: | 179-388 |
| Cow position: | chr5:40923499-40923713 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 211-537 |
| Cow position: | chr5:34298048-34297716 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 218-540 |
| Cow position: | chr5:46629079-46629409 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 227-541 |
| Cow position: | chr5:18273853-18273510 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 227-545 |
| Cow position: | chr5:46004768-46005090 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 233-540 |
| Cow position: | chr5:41466168-41465845 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 233-545 |
| Cow position: | chr5:4018107-4018434 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 267 |
| Conread position: | 233-545 |
| Cow position: | chr5:41960653-41960962 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 244-504 |
| Cow position: | chr5:48855287-48855022 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 244-530 |
| Cow position: | chr5:23686817-23687109 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 244-540 |
| Cow position: | chr5:1227753-1227444 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 244-540 |
| Cow position: | chr5:47893469-47893767 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 246-430 |
| Cow position: | chr5:29767199-29767012 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 56 |
| Conread position: | 246-525 |
| Cow position: | chr5:37733422-37733130 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 257 |
| Conread position: | 246-537 |
| Cow position: | chr5:7274917-7274625 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 128 |
| Conread position: | 246-537 |
| Cow position: | chr5:28949808-28950088 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 111 |
| Conread position: | 246-540 |
| Cow position: | chr5:24998916-24999214 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 191 |
| Conread position: | 246-540 |
| Cow position: | chr5:30580412-30580101 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 262 |
| Conread position: | 246-540 |
| Cow position: | chr5:46669016-46668721 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 239 |
| Conread position: | 246-540 |
| Cow position: | chr5:54791559-54791863 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 257 |
| Conread position: | 246-541 |
| Cow position: | chr5:2915523-2915217 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 254 |
| Conread position: | 246-541 |
| Cow position: | chr5:3787000-3786690 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 259 |
| Conread position: | 246-541 |
| Cow position: | chr5:6153829-6154130 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 189 |
| Conread position: | 246-541 |
| Cow position: | chr5:10855743-10856045 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 246 |
| Conread position: | 246-541 |
| Cow position: | chr5:10919893-10919597 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 246-541 |
| Cow position: | chr5:24099739-24099437 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 251 |
| Conread position: | 246-541 |
| Cow position: | chr5:28012745-28012425 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 257 |
| Conread position: | 246-541 |
| Cow position: | chr5:31100355-31100653 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 49 |
| Conread position: | 246-541 |
| Cow position: | chr5:34697675-34697374 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-541 |
| Cow position: | chr5:41527722-41528003 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 246-541 |
| Cow position: | chr5:48807665-48807968 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 252 |
| Conread position: | 246-541 |
| Cow position: | chr5:49519634-49519331 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-541 |
| Cow position: | chr5:55629065-55628762 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 253 |
| Conread position: | 246-541 |
| Cow position: | chr5:57481465-57481768 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 219 |
| Conread position: | 246-541 |
| Cow position: | chr5:59283390-59283087 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 219 |
| Conread position: | 246-541 |
| Cow position: | chr5:64780942-64781245 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 252 |
| Conread position: | 246-541 |
| Cow position: | chr5:73488486-73488787 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 146 |
| Conread position: | 246-544 |
| Cow position: | chr5:4070294-4069981 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 265 |
| Conread position: | 246-545 |
| Cow position: | chr5:307253-307561 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 254 |
| Conread position: | 246-545 |
| Cow position: | chr5:18664857-18664562 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 246-545 |
| Cow position: | chr5:18885460-18885760 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 246-545 |
| Cow position: | chr5:32773838-32773541 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 246-545 |
| Cow position: | chr5:35301172-35300864 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 51, 213 |
| Conread position: | 246-545 |
| Cow position: | chr5:45701387-45701079 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 246-545 |
| Cow position: | chr5:46808386-46808078 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 51, 213 |
| Conread position: | 246-545 |
| Cow position: | chr5:47830004-47830305 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 209 |
| Conread position: | 246-545 |
| Cow position: | chr5:51308789-51309088 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 247-529 |
| Cow position: | chr5:53624851-53625140 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 248-541 |
| Cow position: | chr5:3503037-3503350 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 54, 95 |
| Conread position: | 249-545 |
| Cow position: | chr5:39017107-39016803 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 48, 209 |
| Conread position: | 250-484 |
| Cow position: | chr5:24151849-24151611 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 250-541 |
| Cow position: | chr5:13046526-13046217 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 259 |
| Conread position: | 256-534 |
| Cow position: | chr5:46737513-46737798 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 142 |
| Conread position: | 260-541 |
| Cow position: | chr5:27654871-27654586 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 271-545 |
| Cow position: | chr5:46665065-46664784 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 65, 228 |
| Conread position: | 286-545 |
| Cow position: | chr5:41554316-41554567 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 330-541 |
| Cow position: | chr5:32948051-32947830 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 175 |
| Conread position: | 338-545 |
| Cow position: | chr5:44460462-44460249 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 374-545 |
| Cow position: | chr5:27055738-27055913 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 390-540 |
| Cow position: | chr5:39245889-39246040 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 416-540 |
| Cow position: | chr5:32308497-32308622 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 78 |
Show alignments to all cow chromosomes.