Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-173 |
| Cow position: | chr6:47226068-47226246 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-202 |
| Cow position: | chr6:37884682-37884895 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 162 |
| Conread position: | 2-158 |
| Cow position: | chr6:44496201-44496045 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 211-541 |
| Cow position: | chr6:55542015-55542354 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 288 |
| Conread position: | 218-541 |
| Cow position: | chr6:41190554-41190230 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 30, 119 |
| Conread position: | 225-541 |
| Cow position: | chr6:8760059-8760379 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 192 |
| Conread position: | 234-533 |
| Cow position: | chr6:10250377-10250680 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 243-540 |
| Cow position: | chr6:34890906-34891212 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 223 |
| Conread position: | 244-371 |
| Cow position: | chr6:2577156-2577027 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 244-435 |
| Cow position: | chr6:25360260-25360066 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 171 |
| Conread position: | 244-470 |
| Cow position: | chr6:48579772-48580006 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 244-530 |
| Cow position: | chr6:34444137-34443837 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 244-541 |
| Cow position: | chr6:50390-50697 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 256 |
| Conread position: | 244-541 |
| Cow position: | chr6:47042001-47042290 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 99 |
| Conread position: | 244-545 |
| Cow position: | chr6:9264304-9263999 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 173 |
| Conread position: | 245-516 |
| Cow position: | chr6:41228659-41228379 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 245-540 |
| Cow position: | chr6:66546702-66546402 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 169 |
| Conread position: | 245-541 |
| Cow position: | chr6:44262255-44262579 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 54, 160 |
| Conread position: | 246-395 |
| Cow position: | chr6:59617324-59617181 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 246-537 |
| Cow position: | chr6:7834730-7834430 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 246-537 |
| Cow position: | chr6:17244199-17244485 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 246-540 |
| Cow position: | chr6:3888292-3888592 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 251 |
| Conread position: | 246-540 |
| Cow position: | chr6:7178076-7178383 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 261 |
| Conread position: | 246-540 |
| Cow position: | chr6:29312715-29312414 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 252 |
| Conread position: | 246-540 |
| Cow position: | chr6:58027888-58027585 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 212 |
| Conread position: | 246-541 |
| Cow position: | chr6:1535362-1535666 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 254 |
| Conread position: | 246-541 |
| Cow position: | chr6:1821399-1821714 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 264 |
| Conread position: | 246-541 |
| Cow position: | chr6:3487214-3487512 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 52, 104 |
| Conread position: | 246-541 |
| Cow position: | chr6:5948569-5948866 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 246-541 |
| Cow position: | chr6:15139961-15140266 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 221 |
| Conread position: | 246-541 |
| Cow position: | chr6:15278602-15278900 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 52 |
| Conread position: | 246-541 |
| Cow position: | chr6:20559889-20560191 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 255 |
| Conread position: | 246-541 |
| Cow position: | chr6:21973884-21973565 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 268 |
| Conread position: | 246-541 |
| Cow position: | chr6:24240266-24239964 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 246-541 |
| Cow position: | chr6:28104646-28104951 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 135 |
| Conread position: | 246-541 |
| Cow position: | chr6:28170115-28169815 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 249 |
| Conread position: | 246-541 |
| Cow position: | chr6:28276223-28275919 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 222 |
| Conread position: | 246-541 |
| Cow position: | chr6:30273681-30273982 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 253 |
| Conread position: | 246-541 |
| Cow position: | chr6:35875498-35875805 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 257 |
| Conread position: | 246-541 |
| Cow position: | chr6:40553361-40553665 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 246-541 |
| Cow position: | chr6:40866110-40866413 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 254 |
| Conread position: | 246-541 |
| Cow position: | chr6:51087154-51086854 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 246-541 |
| Cow position: | chr6:51715739-51715448 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 59 |
| Conread position: | 246-541 |
| Cow position: | chr6:51731294-51731008 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-541 |
| Cow position: | chr6:52694235-52693927 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 57, 151 |
| Conread position: | 246-541 |
| Cow position: | chr6:65842827-65842536 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 246-545 |
| Cow position: | chr6:10644951-10644647 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 177 |
| Conread position: | 246-545 |
| Cow position: | chr6:12665105-12665412 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 246-545 |
| Cow position: | chr6:13105274-13104965 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 255 |
| Conread position: | 246-545 |
| Cow position: | chr6:13848234-13847934 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 246-545 |
| Cow position: | chr6:13945123-13944814 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 256 |
| Conread position: | 246-545 |
| Cow position: | chr6:39910548-39910241 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr6:40326628-40326322 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 246-545 |
| Cow position: | chr6:58601696-58601387 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 253 |
| Conread position: | 246-545 |
| Cow position: | chr6:65820759-65821066 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 246-545 |
| Cow position: | chr6:66233022-66232722 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 247-478 |
| Cow position: | chr6:64717235-64717003 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 96 |
| Conread position: | 247-541 |
| Cow position: | chr6:25215417-25215130 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 128 |
| Conread position: | 247-544 |
| Cow position: | chr6:8203390-8203091 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 93 |
| Conread position: | 248-541 |
| Cow position: | chr6:39333656-39333958 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 252 |
| Conread position: | 249-463 |
| Cow position: | chr6:8022097-8021885 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 249-541 |
| Cow position: | chr6:58065948-58065651 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 196 |
| Conread position: | 249-545 |
| Cow position: | chr6:28134121-28133837 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 250-545 |
| Cow position: | chr6:11871436-11871738 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 47, 250 |
| Conread position: | 251-540 |
| Cow position: | chr6:13316263-13316561 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 122 |
| Conread position: | 252-545 |
| Cow position: | chr6:44149350-44149649 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 253-516 |
| Cow position: | chr6:14761707-14761969 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 253-541 |
| Cow position: | chr6:3276164-3276463 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 249 |
| Conread position: | 254-463 |
| Cow position: | chr6:10339411-10339629 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 258-541 |
| Cow position: | chr6:703416-703128 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 260-541 |
| Cow position: | chr6:914833-914540 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 42, 243 |
| Conread position: | 260-541 |
| Cow position: | chr6:17047253-17046963 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 239 |
| Conread position: | 260-541 |
| Cow position: | chr6:36527501-36527211 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 240 |
| Conread position: | 266-495 |
| Cow position: | chr6:27471773-27471537 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 125 |
| Conread position: | 266-545 |
| Cow position: | chr6:27528804-27529094 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 280-541 |
| Cow position: | chr6:38272060-38271800 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 6 |
| Conread position: | 290-545 |
| Cow position: | chr6:21836019-21836286 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 14, 213 |
| Conread position: | 296-540 |
| Cow position: | chr6:4258593-4258835 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 45 |
| Conread position: | 309-541 |
| Cow position: | chr6:39438915-39438676 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 189 |
| Conread position: | 325-530 |
| Cow position: | chr6:44550029-44550239 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 181 |
| Conread position: | 330-541 |
| Cow position: | chr6:65882340-65882122 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 351-541 |
| Cow position: | chr6:1099057-1099245 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 359-545 |
| Cow position: | chr6:43792620-43792810 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 137 |
Show alignments to all cow chromosomes.