Cow genome map
| Conread name: | rgul0117_e19.y1 |
| Conread position: | 1-202 |
| Cow position: | chr9:1387828-1387620 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 199 |
| Conread position: | 1-202 |
| Cow position: | chr9:16619094-16619299 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 8-202 |
| Cow position: | chr9:40440873-40441074 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 154 |
| Conread position: | 11-202 |
| Cow position: | chr9:27385725-27385526 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 12-176 |
| Cow position: | chr9:5479486-5479319 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 12-203 |
| Cow position: | chr9:23133503-23133697 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 208-545 |
| Cow position: | chr9:16176951-16176606 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 225-540 |
| Cow position: | chr9:1981439-1981115 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 273 |
| Conread position: | 225-540 |
| Cow position: | chr9:3804713-3804386 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 225-541 |
| Cow position: | chr9:44819311-44818988 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 229-539 |
| Cow position: | chr9:3727763-3727441 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 234-535 |
| Cow position: | chr9:4649452-4649752 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 244-422 |
| Cow position: | chr9:20939464-20939282 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 148 |
| Conread position: | 244-483 |
| Cow position: | chr9:19158394-19158645 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 244-541 |
| Cow position: | chr9:4283113-4282813 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 18, 220 |
| Conread position: | 244-545 |
| Cow position: | chr9:25632873-25633175 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 96 |
| Conread position: | 246-355 |
| Cow position: | chr9:26736896-26736784 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-428 |
| Cow position: | chr9:239329-239509 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 246-530 |
| Cow position: | chr9:1995247-1995540 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 253 |
| Conread position: | 246-536 |
| Cow position: | chr9:51181034-51181338 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 258 |
| Conread position: | 246-536 |
| Cow position: | chr9:54925689-54925398 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 166, 58 |
| Conread position: | 246-537 |
| Cow position: | chr9:27783331-27783029 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 255 |
| Conread position: | 246-538 |
| Cow position: | chr9:3764142-3763844 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 117 |
| Conread position: | 246-541 |
| Cow position: | chr9:5005112-5004812 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-541 |
| Cow position: | chr9:6250441-6250139 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 246-541 |
| Cow position: | chr9:7060940-7061241 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-541 |
| Cow position: | chr9:8165742-8166041 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 246-541 |
| Cow position: | chr9:9014227-9013935 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 246-541 |
| Cow position: | chr9:10322944-10322645 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 246-541 |
| Cow position: | chr9:10937738-10937434 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 253 |
| Conread position: | 246-541 |
| Cow position: | chr9:17304834-17305136 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 246-541 |
| Cow position: | chr9:21410440-21410134 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 256 |
| Conread position: | 246-541 |
| Cow position: | chr9:22654719-22654413 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 255 |
| Conread position: | 246-541 |
| Cow position: | chr9:29627614-29627912 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 159 |
| Conread position: | 246-541 |
| Cow position: | chr9:30673518-30673207 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 261 |
| Conread position: | 246-541 |
| Cow position: | chr9:47003329-47003034 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 246-541 |
| Cow position: | chr9:50698442-50698143 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 246-541 |
| Cow position: | chr9:59537238-59536937 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 246-545 |
| Cow position: | chr9:650884-651179 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 140 |
| Conread position: | 246-545 |
| Cow position: | chr9:827965-828298 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 246-545 |
| Cow position: | chr9:18508679-18508976 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 212 |
| Conread position: | 246-545 |
| Cow position: | chr9:25188244-25187940 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 246-545 |
| Cow position: | chr9:25903648-25903348 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 246-545 |
| Cow position: | chr9:28679115-28678807 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 254 |
| Conread position: | 246-545 |
| Cow position: | chr9:51211824-51211517 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 253 |
| Conread position: | 247-541 |
| Cow position: | chr9:31808719-31808417 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 211 |
| Conread position: | 247-541 |
| Cow position: | chr9:37970065-37970355 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 248-545 |
| Cow position: | chr9:17063242-17063552 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 49, 85 |
| Conread position: | 249-541 |
| Cow position: | chr9:6977471-6977178 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 249-541 |
| Cow position: | chr9:32970087-32969788 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 249 |
| Conread position: | 250-541 |
| Cow position: | chr9:22432412-22432116 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 253-540 |
| Cow position: | chr9:29027075-29027369 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 245 |
| Conread position: | 260-539 |
| Cow position: | chr9:9328778-9329043 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 260-541 |
| Cow position: | chr9:37161683-37161972 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 239 |
| Conread position: | 260-541 |
| Cow position: | chr9:59481667-59481952 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 239 |
| Conread position: | 260-541 |
| Cow position: | chr9:60276890-60277174 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 260-545 |
| Cow position: | chr9:42310807-42310517 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 131 |
| Conread position: | 266-540 |
| Cow position: | chr9:5515536-5515259 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 266-541 |
| Cow position: | chr9:27035806-27035523 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 199 |
| Conread position: | 267-545 |
| Cow position: | chr9:13474649-13474953 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 35, 171 |
| Conread position: | 278-536 |
| Cow position: | chr9:5141823-5141564 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 181 |
| Conread position: | 293-545 |
| Cow position: | chr9:3148182-3148434 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 303-541 |
| Cow position: | chr9:3543935-3543699 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 309-545 |
| Cow position: | chr9:34722987-34722744 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 343-541 |
| Cow position: | chr9:2172094-2171888 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 156 |
| Conread position: | 386-541 |
| Cow position: | chr9:43664791-43664638 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 27, 55 |
Show alignments to all cow chromosomes.