Cow genome map
| Conread name: | rgul0117_o20.y1 |
| Conread position: | 1-563 |
| Cow position: | chr12:18769563-18769003 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 106 |
| Conread position: | 4-538 |
| Cow position: | chr12:23983166-23983704 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 206 |
| Conread position: | 153-413 |
| Cow position: | chr12:32391494-32391764 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 153-429 |
| Cow position: | chr12:731273-731006 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 188-437 |
| Cow position: | chr12:30170357-30170607 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 44 |
| Conread position: | 188-558 |
| Cow position: | chr12:8869190-8868818 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 98, 8 |
| Conread position: | 188-562 |
| Cow position: | chr12:3757347-3756980 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 8, 113 |
| Conread position: | 194-443 |
| Cow position: | chr12:9710507-9710264 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 122, 39 |
| Conread position: | 195-398 |
| Cow position: | chr12:5134837-5135045 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 195-401 |
| Cow position: | chr12:44832645-44832839 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 195-413 |
| Cow position: | chr12:17472522-17472311 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 195-413 |
| Cow position: | chr12:35807374-35807595 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 82, 36 |
| Conread position: | 195-423 |
| Cow position: | chr12:34274162-34274392 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 195-469 |
| Cow position: | chr12:24440510-24440790 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 195-508 |
| Cow position: | chr12:16851310-16850991 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 136, 11 |
| Conread position: | 195-535 |
| Cow position: | chr12:20312468-20312130 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 127, 29 |
| Conread position: | 195-555 |
| Cow position: | chr12:1883809-1883473 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 195-555 |
| Cow position: | chr12:31429862-31429510 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 195-557 |
| Cow position: | chr12:33457848-33458210 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 232, 8 |
| Conread position: | 196-426 |
| Cow position: | chr12:15622757-15622519 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 92, 33 |
| Conread position: | 196-485 |
| Cow position: | chr12:32285822-32286123 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 131, 35 |
| Conread position: | 196-489 |
| Cow position: | chr12:27563680-27563382 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 196-553 |
| Cow position: | chr12:24559049-24559417 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 8, 199 |
| Conread position: | 196-564 |
| Cow position: | chr12:30596162-30596538 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 35 |
| Conread position: | 196-566 |
| Cow position: | chr12:25561070-25561442 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 199-582 |
| Cow position: | chr12:10162253-10161870 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 35 |
| Conread position: | 201-434 |
| Cow position: | chr12:38010341-38010123 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 203-408 |
| Cow position: | chr12:40910584-40910379 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 203-429 |
| Cow position: | chr12:40270380-40270161 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 203-543 |
| Cow position: | chr12:30805561-30805907 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 203-582 |
| Cow position: | chr12:16961315-16961691 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 128, 28 |
| Conread position: | 204-422 |
| Cow position: | chr12:6164322-6164101 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 204-490 |
| Cow position: | chr12:5899234-5899521 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 204-578 |
| Cow position: | chr12:22473670-22474056 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 268 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 129, 20 |
| Conread position: | 207-503 |
| Cow position: | chr12:36049108-36049411 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 124, 88 |
| Conread position: | 207-543 |
| Cow position: | chr12:6720032-6720377 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 124, 11 |
| Conread position: | 207-557 |
| Cow position: | chr12:16543858-16543517 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 300, 17 |
| Conread position: | 207-582 |
| Cow position: | chr12:34484213-34483831 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 208-570 |
| Cow position: | chr12:8097059-8096712 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 208, 16 |
| Conread position: | 209-469 |
| Cow position: | chr12:32399908-32400177 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 124, 22 |
| Conread position: | 210-549 |
| Cow position: | chr12:25364859-25364534 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 219-536 |
| Cow position: | chr12:45555700-45555384 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 144 |
| Conread position: | 222-411 |
| Cow position: | chr12:8710555-8710739 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 224-412 |
| Cow position: | chr12:34089558-34089756 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 226-444 |
| Cow position: | chr12:31841165-31841387 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 100, 146 |
| Conread position: | 227-557 |
| Cow position: | chr12:28559024-28559357 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 104, 138 |
| Conread position: | 230-413 |
| Cow position: | chr12:17702501-17702313 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 230-553 |
| Cow position: | chr12:12331769-12331451 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 236-479 |
| Cow position: | chr12:28471379-28471620 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 188, 7 |
| Conread position: | 241-557 |
| Cow position: | chr12:30064687-30064998 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 90, 67 |
| Conread position: | 244-448 |
| Cow position: | chr12:29162065-29161865 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 87, 74 |
| Conread position: | 244-551 |
| Cow position: | chr12:27938660-27938983 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 255-566 |
| Cow position: | chr12:34161174-34161485 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 271-433 |
| Cow position: | chr12:6117673-6117837 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 273-506 |
| Cow position: | chr12:45999935-46000167 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 276-561 |
| Cow position: | chr12:32413285-32413581 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 58, 125 |
| Conread position: | 279-580 |
| Cow position: | chr12:32221441-32221754 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 159 |
| Conread position: | 284-553 |
| Cow position: | chr12:34488928-34488653 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 289-578 |
| Cow position: | chr12:18544434-18544720 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 289-582 |
| Cow position: | chr12:8626142-8625846 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 341-542 |
| Cow position: | chr12:1993727-1993535 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 342-553 |
| Cow position: | chr12:12711383-12711164 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 350-554 |
| Cow position: | chr12:16327342-16327551 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 78, 182 |
| Conread position: | 352-571 |
| Cow position: | chr12:23498003-23498213 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 204, 32 |
| Conread position: | 422-578 |
| Cow position: | chr12:22026859-22027017 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 37 |
Show alignments to all cow chromosomes.