Cow genome map
| Conread name: | rgul0117_o20.y1 |
| Conread position: | 1-548 |
| Cow position: | chr18:16258376-16258920 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 148 |
| Conread position: | 1-555 |
| Cow position: | chr18:21175678-21176253 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 432 |
| Conread position: | 3-582 |
| Cow position: | chr18:29224203-29224793 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 11-562 |
| Cow position: | chr18:23424439-23424990 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 147 |
| Conread position: | 30-553 |
| Cow position: | chr18:9805961-9806485 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 102 |
| Conread position: | 30-554 |
| Cow position: | chr18:42060609-42061140 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 353 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 31-412 |
| Cow position: | chr18:11680270-11680644 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 102 |
| Conread position: | 57-547 |
| Cow position: | chr18:25971049-25970577 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 146-582 |
| Cow position: | chr18:23317447-23317011 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 8 |
| Conread position: | 173-553 |
| Cow position: | chr18:48549675-48550053 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 183-440 |
| Cow position: | chr18:19486806-19487065 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 151, 16 |
| Conread position: | 184-582 |
| Cow position: | chr18:28085269-28085670 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 10 |
| Conread position: | 187-430 |
| Cow position: | chr18:22092478-22092715 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 165, 10 |
| Conread position: | 188-423 |
| Cow position: | chr18:48290741-48290511 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 146, 35 |
| Conread position: | 188-468 |
| Cow position: | chr18:26937429-26937701 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 188-563 |
| Cow position: | chr18:29796728-29796354 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 188-564 |
| Cow position: | chr18:50700363-50700759 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 189-428 |
| Cow position: | chr18:44262322-44262561 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 142, 7 |
| Conread position: | 189-487 |
| Cow position: | chr18:22874572-22874869 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 138, 7 |
| Conread position: | 189-582 |
| Cow position: | chr18:11368066-11367657 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 189-582 |
| Cow position: | chr18:54031404-54031799 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 193-534 |
| Cow position: | chr18:40203097-40202758 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 222, 38 |
| Conread position: | 194-424 |
| Cow position: | chr18:55505104-55505339 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 194-541 |
| Cow position: | chr18:329570-329220 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 221, 39 |
| Conread position: | 195-404 |
| Cow position: | chr18:49161752-49161531 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 138, 36 |
| Conread position: | 195-414 |
| Cow position: | chr18:56361898-56361681 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 120, 162 |
| Conread position: | 195-423 |
| Cow position: | chr18:28101330-28101562 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 36 |
| Conread position: | 195-437 |
| Cow position: | chr18:29058791-29058550 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 132, 35 |
| Conread position: | 195-524 |
| Cow position: | chr18:26535812-26535472 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 195-530 |
| Cow position: | chr18:4515731-4516071 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 124, 29 |
| Conread position: | 195-557 |
| Cow position: | chr18:45961555-45961203 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 224, 27 |
| Conread position: | 195-564 |
| Cow position: | chr18:16842361-16841977 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 195-566 |
| Cow position: | chr18:19193644-19193288 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 230, 15 |
| Conread position: | 196-404 |
| Cow position: | chr18:4578764-4578556 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 135, 35 |
| Conread position: | 196-511 |
| Cow position: | chr18:40694681-40694986 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 239, 35 |
| Conread position: | 196-561 |
| Cow position: | chr18:17324415-17324772 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 135, 35 |
| Conread position: | 197-429 |
| Cow position: | chr18:20641779-20641552 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 172, 34 |
| Conread position: | 198-505 |
| Cow position: | chr18:23652906-23652604 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 202-562 |
| Cow position: | chr18:17334705-17334349 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 202-566 |
| Cow position: | chr18:25282844-25282477 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 203-464 |
| Cow position: | chr18:52868907-52869178 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 113, 28 |
| Conread position: | 203-469 |
| Cow position: | chr18:33407323-33407597 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 126, 26 |
| Conread position: | 203-550 |
| Cow position: | chr18:38344516-38344866 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 110, 21 |
| Conread position: | 203-562 |
| Cow position: | chr18:51298193-51298551 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 147, 28 |
| Conread position: | 203-566 |
| Cow position: | chr18:17004962-17005338 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 28 |
| Conread position: | 203-566 |
| Cow position: | chr18:18919241-18918883 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 204-429 |
| Cow position: | chr18:29356916-29356690 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 204-582 |
| Cow position: | chr18:32860361-32860751 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 20 |
| Conread position: | 207-459 |
| Cow position: | chr18:38985403-38985657 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 124, 24 |
| Conread position: | 207-508 |
| Cow position: | chr18:290645-290366 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 221, 24 |
| Conread position: | 207-552 |
| Cow position: | chr18:249087-248752 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 207-553 |
| Cow position: | chr18:35472221-35471864 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 24 |
| Conread position: | 207-555 |
| Cow position: | chr18:34052271-34051925 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 17 |
| Conread position: | 207-557 |
| Cow position: | chr18:22065646-22065277 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 124, 17 |
| Conread position: | 211-564 |
| Cow position: | chr18:32773599-32773953 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 119, 13 |
| Conread position: | 212-429 |
| Cow position: | chr18:34325237-34325017 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 113, 12 |
| Conread position: | 212-548 |
| Cow position: | chr18:22434208-22433872 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 215-411 |
| Cow position: | chr18:14480197-14480387 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 118, 16 |
| Conread position: | 215-438 |
| Cow position: | chr18:36477918-36478145 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 108, 192 |
| Conread position: | 215-567 |
| Cow position: | chr18:17228243-17227887 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 116, 19 |
| Conread position: | 218-413 |
| Cow position: | chr18:5570878-5571079 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 222-582 |
| Cow position: | chr18:36187802-36187445 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 49 |
| Conread position: | 223-433 |
| Cow position: | chr18:11183673-11183886 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 232-426 |
| Cow position: | chr18:12023893-12023701 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 83, 70 |
| Conread position: | 232-461 |
| Cow position: | chr18:17670062-17669834 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 99, 67 |
| Conread position: | 233-564 |
| Cow position: | chr18:22411876-22411536 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 87, 69 |
| Conread position: | 235-437 |
| Cow position: | chr18:31562650-31562449 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 239-558 |
| Cow position: | chr18:32883048-32883370 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 244-520 |
| Cow position: | chr18:25984822-25984540 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 244-562 |
| Cow position: | chr18:19363684-19364005 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 246-535 |
| Cow position: | chr18:34021144-34021435 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 115, 54 |
| Conread position: | 260-428 |
| Cow position: | chr18:42479824-42479652 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 120 |
| Conread position: | 260-557 |
| Cow position: | chr18:21574760-21575054 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 265-524 |
| Cow position: | chr18:36123306-36123570 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 269-412 |
| Cow position: | chr18:8204334-8204480 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 269-553 |
| Cow position: | chr18:54275308-54275594 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 271-557 |
| Cow position: | chr18:23715110-23714815 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 292-539 |
| Cow position: | chr18:41259284-41259029 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 311-554 |
| Cow position: | chr18:9078379-9078136 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 341-520 |
| Cow position: | chr18:21291162-21290974 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 342-582 |
| Cow position: | chr18:23669420-23669169 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 366-582 |
| Cow position: | chr18:31997325-31997550 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 421-574 |
| Cow position: | chr18:1062073-1061919 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 135, 0 |
Show alignments to all cow chromosomes.